-
1
-
-
79551599525
-
Mugsy: fast multiple alignment of closely related whole genomes
-
Angiuoli S.V., Salzberg S.L. Mugsy: fast multiple alignment of closely related whole genomes. Bioinformat. 2011, 27:334-342.
-
(2011)
Bioinformat.
, vol.27
, pp. 334-342
-
-
Angiuoli, S.V.1
Salzberg, S.L.2
-
2
-
-
0036077023
-
Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family
-
Bernier C., Gounon P., Le Bouguenec C. Identification of an aggregative adhesion fimbria (AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for detecting the AAF-encoding operon family. Infect. Immun. 2002, 70:4302-4311.
-
(2002)
Infect. Immun.
, vol.70
, pp. 4302-4311
-
-
Bernier, C.1
Gounon, P.2
Le Bouguenec, C.3
-
3
-
-
0032568984
-
Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli
-
Bieber D., Ramer S.W., Wu C.Y., et al. Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli. Science 1998, 280:2114-2118.
-
(1998)
Science
, vol.280
, pp. 2114-2118
-
-
Bieber, D.1
Ramer, S.W.2
Wu, C.Y.3
-
4
-
-
0024413254
-
Molecular characterization of a fimbrial adhesin, F1845, mediating diffuse adherence of diarrhea-associated Escherichia coli to HEp-2 cells
-
Bilge S.S., Clausen C.R., Lau W., Moseley S.L. Molecular characterization of a fimbrial adhesin, F1845, mediating diffuse adherence of diarrhea-associated Escherichia coli to HEp-2 cells. J. Bacteriol. 1989, 171:4281-4289.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4281-4289
-
-
Bilge, S.S.1
Clausen, C.R.2
Lau, W.3
Moseley, S.L.4
-
5
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner F.R., Plunkett G., Bloch C.A., et al. The complete genome sequence of Escherichia coli K-12. Science 1997, 277:1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett, G.2
Bloch, C.A.3
-
6
-
-
59649109832
-
Short report: high prevalence of serine protease autotransporter cytotoxins among strains of enteroaggregative Escherichia coli
-
Boisen N., Ruiz-Perez F., Scheutz F., Krogfelt K.A., Nataro J.P. Short report: high prevalence of serine protease autotransporter cytotoxins among strains of enteroaggregative Escherichia coli. Am. J. Trop. Med. Hyg. 2009, 80:294-301.
-
(2009)
Am. J. Trop. Med. Hyg.
, vol.80
, pp. 294-301
-
-
Boisen, N.1
Ruiz-Perez, F.2
Scheutz, F.3
Krogfelt, K.A.4
Nataro, J.P.5
-
7
-
-
84855902172
-
Genomic characterization of enteroaggregative Escherichia coli from children in Mali
-
Boisen N., Scheutz F., Rasko D.A., et al. Genomic characterization of enteroaggregative Escherichia coli from children in Mali. J. Infect. Dis. 2012, 205:431-444.
-
(2012)
J. Infect. Dis.
, vol.205
, pp. 431-444
-
-
Boisen, N.1
Scheutz, F.2
Rasko, D.A.3
-
8
-
-
33646167864
-
A simple and robust statistical test for detecting the presence of recombination
-
Bruen T.C., Philippe H., Bryant D. A simple and robust statistical test for detecting the presence of recombination. Genetics 2006, 172:2665-2681.
-
(2006)
Genetics
, vol.172
, pp. 2665-2681
-
-
Bruen, T.C.1
Philippe, H.2
Bryant, D.3
-
9
-
-
33748082663
-
How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains
-
Brzuszkiewicz E., Bruggemann H., Liesegang H., et al. How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. Proc. Nat. Acad. Sci. USA 2006, 103:12879-12884.
-
(2006)
Proc. Nat. Acad. Sci. USA
, vol.103
, pp. 12879-12884
-
-
Brzuszkiewicz, E.1
Bruggemann, H.2
Liesegang, H.3
-
10
-
-
0027015958
-
Lambdoid phages as elements of bacterial genomes (integrase/phage21/Escherichia coli K-12/icd gene)
-
Campbell A., Schneider S.J., Song B. Lambdoid phages as elements of bacterial genomes (integrase/phage21/Escherichia coli K-12/icd gene). Genetica 1992, 86:259-267.
-
(1992)
Genetica
, vol.86
, pp. 259-267
-
-
Campbell, A.1
Schneider, S.J.2
Song, B.3
-
11
-
-
77649289609
-
Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042
-
Chaudhuri R.R., Sebaihia M., Hobman J.L., et al. Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. PloS One 2010, 5:e8801.
-
(2010)
PloS One
, vol.5
-
-
Chaudhuri, R.R.1
Sebaihia, M.2
Hobman, J.L.3
-
12
-
-
33645827531
-
Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach
-
Chen S.L., Hung C.S., Xu J., et al. Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach. Proc. Natl. Acad. Sci. USA 2006, 103:5977-5982.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5977-5982
-
-
Chen, S.L.1
Hung, C.S.2
Xu, J.3
-
14
-
-
78049387115
-
A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407
-
Crossman L.C., Chaudhuri R.R., Beatson S.A., et al. A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J. Bacteriol. 2010, 192:5822-5831.
-
(2010)
J. Bacteriol.
, vol.192
, pp. 5822-5831
-
-
Crossman, L.C.1
Chaudhuri, R.R.2
Beatson, S.A.3
-
15
-
-
0032984352
-
Phylogenetic analysis of enteroaggregative and diffusely adherent Escherichia coli
-
Czeczulin J.R., Whittam T.S., Henderson I.R., Navarro-Garcia F., Nataro J.P. Phylogenetic analysis of enteroaggregative and diffusely adherent Escherichia coli. Infect. Immun. 1999, 67:2692-2699.
-
(1999)
Infect. Immun.
, vol.67
, pp. 2692-2699
-
-
Czeczulin, J.R.1
Whittam, T.S.2
Henderson, I.R.3
Navarro-Garcia, F.4
Nataro, J.P.5
-
16
-
-
0026674948
-
Enteropathogenic Escherichia coli
-
Donnenberg M.S., Kaper J.B. Enteropathogenic Escherichia coli. Infect. Immun. 1992, 60:3953-3961.
-
(1992)
Infect. Immun.
, vol.60
, pp. 3953-3961
-
-
Donnenberg, M.S.1
Kaper, J.B.2
-
17
-
-
0027235835
-
Role of the eaeA gene in experimental enteropathogenic Escherichia coli infection
-
Donnenberg M.S., Tacket C.O., James S.P., et al. Role of the eaeA gene in experimental enteropathogenic Escherichia coli infection. J. Clin. Invest. 1993, 92:1412-1417.
-
(1993)
J. Clin. Invest.
, vol.92
, pp. 1412-1417
-
-
Donnenberg, M.S.1
Tacket, C.O.2
James, S.P.3
-
18
-
-
33747080208
-
Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli
-
Dudley E.G., Thomson N.R., Parkhill J., Morin N.P., Nataro J.P. Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli. Mol. Microbiol. 2006, 61:1267-1282.
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 1267-1282
-
-
Dudley, E.G.1
Thomson, N.R.2
Parkhill, J.3
Morin, N.P.4
Nataro, J.P.5
-
19
-
-
84055214189
-
Genomic anatomy of Escherichia coli O157:H7 outbreaks
-
Eppinger M., Mammel M.K., Leclerc J.E., Ravel J., Cebula T.A. Genomic anatomy of Escherichia coli O157:H7 outbreaks. Proc. Natl. Acad. Sci. USA 2011, 108:20142-20147.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 20142-20147
-
-
Eppinger, M.1
Mammel, M.K.2
Leclerc, J.E.3
Ravel, J.4
Cebula, T.A.5
-
20
-
-
80955168000
-
Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany
-
Frank C., Werber D., Cramer J.P., et al. Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany. NEJM 2011, 365:1771-1780.
-
(2011)
NEJM
, vol.365
, pp. 1771-1780
-
-
Frank, C.1
Werber, D.2
Cramer, J.P.3
-
21
-
-
0030297520
-
Colonization factors of human enterotoxigenic Escherichia coli (ETEC)
-
Gaastra W., Svennerholm A.M. Colonization factors of human enterotoxigenic Escherichia coli (ETEC). Trends. Microbiol. 1996, 4:444-452.
-
(1996)
Trends. Microbiol.
, vol.4
, pp. 444-452
-
-
Gaastra, W.1
Svennerholm, A.M.2
-
22
-
-
0026330896
-
An inducible bundle-forming pilus of enteropathogenic Escherichia coli
-
Giron J.A., Ho A.S., Schoolnik G.K. An inducible bundle-forming pilus of enteropathogenic Escherichia coli. Science 1991, 254:710-713.
-
(1991)
Science
, vol.254
, pp. 710-713
-
-
Giron, J.A.1
Ho, A.S.2
Schoolnik, G.K.3
-
23
-
-
84857411659
-
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
-
Grad Y.H., Lipsitch M., Feldgarden M., et al. Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc. Natl. Acad. Sci. USA 2012, 109:3065-3070.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 3065-3070
-
-
Grad, Y.H.1
Lipsitch, M.2
Feldgarden, M.3
-
24
-
-
0033758756
-
Pathogenicity islands and the evolution of microbes
-
Hacker J., Kaper J.B. Pathogenicity islands and the evolution of microbes. Annu. Rev. Microbiol. 2000, 54:641-679.
-
(2000)
Annu. Rev. Microbiol.
, vol.54
, pp. 641-679
-
-
Hacker, J.1
Kaper, J.B.2
-
25
-
-
0026465907
-
Genetics of Escherichia coli uropathogenicity: analysis of the O6:K15:H31 isolate 536
-
Hacker J., Ott M., Blum G., et al. Genetics of Escherichia coli uropathogenicity: analysis of the O6:K15:H31 isolate 536. Zentralbl. Bakteriol. 1992, 276:165-175.
-
(1992)
Zentralbl. Bakteriol.
, vol.276
, pp. 165-175
-
-
Hacker, J.1
Ott, M.2
Blum, G.3
-
26
-
-
79251526849
-
Escherichia coli global gene expression in urine from women with urinary tract infection
-
Hagan E.C., Lloyd A.L., Rasko D.A., Faerber G.J., Mobley H.L. Escherichia coli global gene expression in urine from women with urinary tract infection. PLoS Path 2010, 6:e1001187.
-
(2010)
PLoS Path
, vol.6
-
-
Hagan, E.C.1
Lloyd, A.L.2
Rasko, D.A.3
Faerber, G.J.4
Mobley, H.L.5
-
27
-
-
0025903435
-
Genetic basis of virulence in Shigella species
-
Hale T.L. Genetic basis of virulence in Shigella species. Microbiol. Rev. 1991, 55:206-224.
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 206-224
-
-
Hale, T.L.1
-
28
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi T., Makino K., Ohnishi M., et al. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 2001, 8:11-22.
-
(2001)
DNA Res.
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
-
29
-
-
84941715126
-
Phylogenomics of the attaching and effacing Escherichia coli (AEEC): redefining the pathotype paradigm using whole-genome sequencing
-
Hazen T.H., Sahl J.W., Donnenberg M.S., Scheutz F., Rasko D.A. Phylogenomics of the attaching and effacing Escherichia coli (AEEC): redefining the pathotype paradigm using whole-genome sequencing. Unpublished 2012.
-
(2012)
Unpublished
-
-
Hazen, T.H.1
Sahl, J.W.2
Donnenberg, M.S.3
Scheutz, F.4
Rasko, D.A.5
-
30
-
-
39749173921
-
Reduced selection leads to accelerated gene loss in Shigella
-
Hershberg R., Tang H., Petrov D.A. Reduced selection leads to accelerated gene loss in Shigella. Genome. Biol. 2007, 8:R164.
-
(2007)
Genome. Biol.
, vol.8
, pp. R164
-
-
Hershberg, R.1
Tang, H.2
Petrov, D.A.3
-
31
-
-
58149498183
-
Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69
-
Iguchi A., Thomson N.R., Ogura Y., et al. Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. J. Bacteriol. 2009, 191:347-354.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 347-354
-
-
Iguchi, A.1
Thomson, N.R.2
Ogura, Y.3
-
32
-
-
18644378721
-
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
-
Jin Q., Yuan Z., Xu J., et al. Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157. Nuc. Acid. Res. 2002, 30:4432-4441.
-
(2002)
Nuc. Acid. Res.
, vol.30
, pp. 4432-4441
-
-
Jin, Q.1
Yuan, Z.2
Xu, J.3
-
33
-
-
0033923288
-
Shigella and Escherichia coli at the crossroads: machiavellian masqueraders or taxonomic treachery?
-
Johnson J.R. Shigella and Escherichia coli at the crossroads: machiavellian masqueraders or taxonomic treachery?. J. Med. Micro. 2000, 49:583-585.
-
(2000)
J. Med. Micro.
, vol.49
, pp. 583-585
-
-
Johnson, J.R.1
-
34
-
-
33749587567
-
Experimental mouse lethality of Escherichia coli isolates, in relation to accessory traits, phylogenetic group, and ecological source
-
Johnson J.R., Clermont O., Menard M., Kuskowski M.A., Picard B., Denamur E. Experimental mouse lethality of Escherichia coli isolates, in relation to accessory traits, phylogenetic group, and ecological source. J. Infect. Dis. 2006, 194:1141-1150.
-
(2006)
J. Infect. Dis.
, vol.194
, pp. 1141-1150
-
-
Johnson, J.R.1
Clermont, O.2
Menard, M.3
Kuskowski, M.A.4
Picard, B.5
Denamur, E.6
-
35
-
-
33845388167
-
The emerging clinical importance of non-O157 Shiga toxin-producing Escherichia coli
-
Johnson K.E., Thorpe C.M., Sears C.L. The emerging clinical importance of non-O157 Shiga toxin-producing Escherichia coli. Clin. Infect. Dis. 2006, 43:1587-1595.
-
(2006)
Clin. Infect. Dis.
, vol.43
, pp. 1587-1595
-
-
Johnson, K.E.1
Thorpe, C.M.2
Sears, C.L.3
-
38
-
-
0032879806
-
Global burden of Shigella infections: implications for vaccine development and implementation of control strategies
-
Kotloff K.L., Winickoff J.P., Ivanoff B., et al. Global burden of Shigella infections: implications for vaccine development and implementation of control strategies. Bull. World Health Organ 1999, 77:651-666.
-
(1999)
Bull. World Health Organ
, vol.77
, pp. 651-666
-
-
Kotloff, K.L.1
Winickoff, J.P.2
Ivanoff, B.3
-
39
-
-
0036209592
-
Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms
-
Kudva I.T., Evans P.S., Perna N.T., et al. Strains of Escherichia coli O157:H7 differ primarily by insertions or deletions, not single-nucleotide polymorphisms. J. Bacteriol. 2002, 184:1873-1879.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1873-1879
-
-
Kudva, I.T.1
Evans, P.S.2
Perna, N.T.3
-
40
-
-
33846264492
-
Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling
-
Lacher D.W., Steinsland H., Blank T.E., Donnenberg M.S., Whittam T.S. Molecular evolution of typical enteropathogenic Escherichia coli: clonal analysis by multilocus sequence typing and virulence gene allelic profiling. J. Bacteriol. 2007, 189:342-350.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 342-350
-
-
Lacher, D.W.1
Steinsland, H.2
Blank, T.E.3
Donnenberg, M.S.4
Whittam, T.S.5
-
41
-
-
33745726446
-
Allelic subtyping of the intimin locus (eae) of pathogenic Escherichia coli by fluorescent RFLP
-
Lacher D.W., Steinsland H., Whittam T.S. Allelic subtyping of the intimin locus (eae) of pathogenic Escherichia coli by fluorescent RFLP. FEMS. Microbiol. Lett. 2006, 261:80-87.
-
(2006)
FEMS. Microbiol. Lett.
, vol.261
, pp. 80-87
-
-
Lacher, D.W.1
Steinsland, H.2
Whittam, T.S.3
-
42
-
-
79959573534
-
Obscured phylogeny and possible recombinational dormancy in Escherichia coli
-
Leopold S.R., Sawyer S.A., Whittam T.S., Tarr P.I. Obscured phylogeny and possible recombinational dormancy in Escherichia coli. BMC Evolut. Biol. 2011, 11:183.
-
(2011)
BMC Evolut. Biol.
, vol.11
, pp. 183
-
-
Leopold, S.R.1
Sawyer, S.A.2
Whittam, T.S.3
Tarr, P.I.4
-
43
-
-
0021825282
-
The diarrheal response of humans to some classic serotypes of enteropathogenic Escherichia coli is dependent on a plasmid encoding an enteroadhesiveness factor
-
Levine M.M., Nataro J.P., Karch H., et al. The diarrheal response of humans to some classic serotypes of enteropathogenic Escherichia coli is dependent on a plasmid encoding an enteroadhesiveness factor. J. Infect. Dis. 1985, 152:550-559.
-
(1985)
J. Infect. Dis.
, vol.152
, pp. 550-559
-
-
Levine, M.M.1
Nataro, J.P.2
Karch, H.3
-
44
-
-
34247601641
-
Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli
-
Lloyd A.L., Rasko D.A., Mobley H.L. Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli. J. Bacteriol. 2007, 189:3532-3546.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 3532-3546
-
-
Lloyd, A.L.1
Rasko, D.A.2
Mobley, H.L.3
-
45
-
-
42449105377
-
Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks
-
Manning S.D., Motiwala A.S., Springman A.C., et al. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks. Proc. Natl. Acad. Sci. USA 2008, 105:4868-4873.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4868-4873
-
-
Manning, S.D.1
Motiwala, A.S.2
Springman, A.C.3
-
46
-
-
0028945803
-
A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens
-
McDaniel T.K., Jarvis K.G., Donnenberg M.S., Kaper J.B. A genetic locus of enterocyte effacement conserved among diverse enterobacterial pathogens. Proc. Natl. Acad. Sci. USA 1995, 92:1664-1668.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 1664-1668
-
-
McDaniel, T.K.1
Jarvis, K.G.2
Donnenberg, M.S.3
Kaper, J.B.4
-
47
-
-
48749112422
-
Analysis of collection of hemolytic uremic syndrome-associated enterohemorrhagic
-
Mellmann A., Bielaszewska M., Kock R., et al. Analysis of collection of hemolytic uremic syndrome-associated enterohemorrhagic. Escherichia coli. Emerg. Infect. Dis. 2008, 14:1287-1290.
-
(2008)
Escherichia coli. Emerg. Infect. Dis.
, vol.14
, pp. 1287-1290
-
-
Mellmann, A.1
Bielaszewska, M.2
Kock, R.3
-
48
-
-
0035282870
-
The pathogenicity islands (PAIs) of the uropathogenic Escherichia coli strain 536: island probing of PAI II536
-
Middendorf B., Blum-Oehler G., Dobrindt U., Muhldorfer I., Salge S., Hacker J. The pathogenicity islands (PAIs) of the uropathogenic Escherichia coli strain 536: island probing of PAI II536. J. Infect. Dis. 2001, 183(Suppl. 1):S17-S20.
-
(2001)
J. Infect. Dis.
, vol.183
, pp. S17-S20
-
-
Middendorf, B.1
Blum-Oehler, G.2
Dobrindt, U.3
Muhldorfer, I.4
Salge, S.5
Hacker, J.6
-
49
-
-
77958603351
-
Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82
-
Miquel S., Peyretaillade E., Claret L., et al. Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82. PloS One 2010, 5.
-
(2010)
PloS One
, pp. 5
-
-
Miquel, S.1
Peyretaillade, E.2
Claret, L.3
-
50
-
-
0031917141
-
Enteroaggregative, Shiga toxin-producing Escherichia coli O111:H2 associated with an outbreak of hemolytic-uremic syndrome
-
Morabito S., Karch H., Mariani-Kurkdjian P., et al. Enteroaggregative, Shiga toxin-producing Escherichia coli O111:H2 associated with an outbreak of hemolytic-uremic syndrome. J. Clin. Microbiol. 1998, 36:840-842.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 840-842
-
-
Morabito, S.1
Karch, H.2
Mariani-Kurkdjian, P.3
-
51
-
-
0037040394
-
Microbial minimalism: genome reduction in bacterial pathogens
-
Moran N.A. Microbial minimalism: genome reduction in bacterial pathogens. Cell 2002, 108:583-586.
-
(2002)
Cell
, vol.108
, pp. 583-586
-
-
Moran, N.A.1
-
52
-
-
79953868866
-
Discovery and phylogenetic analysis of novel members of class b enterotoxigenic Escherichia coli adhesive fimbriae
-
Nada R.A., Shaheen H.I., Khalil S.B., et al. Discovery and phylogenetic analysis of novel members of class b enterotoxigenic Escherichia coli adhesive fimbriae. J. Clin. Microbiol. 2011, 49:1403-1410.
-
(2011)
J. Clin. Microbiol.
, vol.49
, pp. 1403-1410
-
-
Nada, R.A.1
Shaheen, H.I.2
Khalil, S.B.3
-
53
-
-
78649335559
-
Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes
-
Nash J.H., Villegas A., Kropinski A.M., et al. Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes. BMC Genomics 2010, 11:667.
-
(2010)
BMC Genomics
, vol.11
, pp. 667
-
-
Nash, J.H.1
Villegas, A.2
Kropinski, A.M.3
-
54
-
-
0027522630
-
Aggregative adherence fimbria I expression in enteroaggregative Escherichia coli requires two unlinked plasmid regions
-
Nataro J.P., Yikang D., Giron J.A., Savarino S.J., Kothary M.H., Hall R. Aggregative adherence fimbria I expression in enteroaggregative Escherichia coli requires two unlinked plasmid regions. Infect. Immun. 1993, 61:1126-1131.
-
(1993)
Infect. Immun.
, vol.61
, pp. 1126-1131
-
-
Nataro, J.P.1
Yikang, D.2
Giron, J.A.3
Savarino, S.J.4
Kothary, M.H.5
Hall, R.6
-
55
-
-
63849216973
-
Shiga toxin-producing Escherichia coli strains negative for locus of enterocyte effacement
-
Newton H.J., Sloan J., Bulach D.M., et al. Shiga toxin-producing Escherichia coli strains negative for locus of enterocyte effacement. Emerg. Infect. Dis. 2009, 15:372-380.
-
(2009)
Emerg. Infect. Dis.
, vol.15
, pp. 372-380
-
-
Newton, H.J.1
Sloan, J.2
Bulach, D.M.3
-
56
-
-
0020960815
-
Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella
-
Ochman H., Whittam T.S., Caugant D.A., Selander R.K. Enzyme polymorphism and genetic population structure in Escherichia coli and Shigella. J. Gen. Microbiol. 1983, 129:2715-2726.
-
(1983)
J. Gen. Microbiol.
, vol.129
, pp. 2715-2726
-
-
Ochman, H.1
Whittam, T.S.2
Caugant, D.A.3
Selander, R.K.4
-
57
-
-
70449568272
-
Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli
-
Ogura Y., Ooka T., Iguchi A., et al. Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli. Proc. Natl. Acad. Sci. USA 2009, 106:17939-17944.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17939-17944
-
-
Ogura, Y.1
Ooka, T.2
Iguchi, A.3
-
58
-
-
0025295771
-
Clonal relationships among classic enteropathogenic Escherichia coli (EPEC) belong to different O groups
-
Orskov F., Whittam T.S., Cravioto A., Orskov I. Clonal relationships among classic enteropathogenic Escherichia coli (EPEC) belong to different O groups. J. Infect. Dis. 1990, 162:76-81.
-
(1990)
J. Infect. Dis.
, vol.162
, pp. 76-81
-
-
Orskov, F.1
Whittam, T.S.2
Cravioto, A.3
Orskov, I.4
-
59
-
-
84855735616
-
Distinct transcriptional profiles and phenotypes exhibited by Escherichia coli O157:H7 isolates related to the 2006 spinach-associated outbreak
-
Parker C.T., Kyle J.L., Huynh S., Carter M.Q., Brandl M.T., Mandrell R.E. Distinct transcriptional profiles and phenotypes exhibited by Escherichia coli O157:H7 isolates related to the 2006 spinach-associated outbreak. Appl. Environ. Microbiol. 2012, 78:455-463.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 455-463
-
-
Parker, C.T.1
Kyle, J.L.2
Huynh, S.3
Carter, M.Q.4
Brandl, M.T.5
Mandrell, R.E.6
-
60
-
-
0029037310
-
Enhanced secretion through the Shigella flexneri Mxi-Spa translocon leads to assembly of extracellular proteins into macromolecular structures
-
Parsot C., Menard R., Gounon P., Sansonetti P.J. Enhanced secretion through the Shigella flexneri Mxi-Spa translocon leads to assembly of extracellular proteins into macromolecular structures. Mol. Microbiol. 1995, 16:291-300.
-
(1995)
Mol. Microbiol.
, vol.16
, pp. 291-300
-
-
Parsot, C.1
Menard, R.2
Gounon, P.3
Sansonetti, P.J.4
-
61
-
-
0035945586
-
Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
-
Perna N.T., Plunkett G., Burland V., et al. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7. Nature 2001, 409:529-533.
-
(2001)
Nature
, vol.409
, pp. 529-533
-
-
Perna, N.T.1
Plunkett, G.2
Burland, V.3
-
62
-
-
79960837602
-
Yersiniabactin iron uptake: mechanisms and role in Yersinia pestis pathogenesis
-
Perry R.D., Fetherston J.D. Yersiniabactin iron uptake: mechanisms and role in Yersinia pestis pathogenesis. Microbes. Infect. 2011, 13:808-817.
-
(2011)
Microbes. Infect.
, vol.13
, pp. 808-817
-
-
Perry, R.D.1
Fetherston, J.D.2
-
63
-
-
0034641731
-
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics
-
Pupo G.M., Lan R., Reeves P.R. Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics. Proc. Natl. Acad. Sci. USA 2000, 97:10567-10572.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10567-10572
-
-
Pupo, G.M.1
Lan, R.2
Reeves, P.R.3
-
64
-
-
53849104729
-
The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates
-
Rasko D.A., Rosovitz M.J., Myers G.S., et al. The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates. J. Bacteriol. 2008, 190:6881-6893.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 6881-6893
-
-
Rasko, D.A.1
Rosovitz, M.J.2
Myers, G.S.3
-
65
-
-
80052150179
-
Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany
-
Rasko D.A., Webster D.R., Sahl J.W., et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N. Engl. J. Med. 2011, 365:725-729.
-
(2011)
N. Engl. J. Med.
, vol.365
, pp. 725-729
-
-
Rasko, D.A.1
Webster, D.R.2
Sahl, J.W.3
-
66
-
-
80052173621
-
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4
-
Rohde H., Qin J., Cui Y., et al. Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N. Engl. J. Med. 2011, 365:718-724.
-
(2011)
N. Engl. J. Med.
, vol.365
, pp. 718-724
-
-
Rohde, H.1
Qin, J.2
Cui, Y.3
-
67
-
-
84941715127
-
The phylogenomics of Shigella: a pathway to a new diagnostic assay
-
Sahl J.W., Morris C.R., Emberger J., et al. The phylogenomics of Shigella: a pathway to a new diagnostic assay. Unpublished 2012.
-
(2012)
Unpublished
-
-
Sahl, J.W.1
Morris, C.R.2
Emberger, J.3
-
68
-
-
84857676422
-
Analysis of the global transcriptional profiles of enterotoxigenic Escherichia coli (ETEC) isolate E24377A
-
Sahl J.W., Rasko D.A. Analysis of the global transcriptional profiles of enterotoxigenic Escherichia coli (ETEC) isolate E24377A. Infect. Immun. 2012, 80:1232-1242.
-
(2012)
Infect. Immun.
, vol.80
, pp. 1232-1242
-
-
Sahl, J.W.1
Rasko, D.A.2
-
69
-
-
84941715128
-
Insights into enterotoxigenic Escherichia coli (ETEC) pathogenesis based genomic epidemiology of symptomatic and asymptomatic isolates
-
Sahl J.W., Steinsland H., Rasko D.A. Insights into enterotoxigenic Escherichia coli (ETEC) pathogenesis based genomic epidemiology of symptomatic and asymptomatic isolates. Unpublished 2012.
-
(2012)
Unpublished
-
-
Sahl, J.W.1
Steinsland, H.2
Rasko, D.A.3
-
70
-
-
79251525497
-
A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation
-
Sahl J.W., Steinsland H., Redman J.C., et al. A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infect. Immun. 2011, 79:950-960.
-
(2011)
Infect. Immun.
, vol.79
, pp. 950-960
-
-
Sahl, J.W.1
Steinsland, H.2
Redman, J.C.3
-
71
-
-
0036161950
-
Diffusely adherent Escherichia coli as a cause of acute diarrhea in young children in Northeast Brazil: a case-control study
-
Scaletsky I.C., Fabbricotti S.H., Carvalho R.L., et al. Diffusely adherent Escherichia coli as a cause of acute diarrhea in young children in Northeast Brazil: a case-control study. J. Clin. Microbiol. 2002, 40:645-648.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 645-648
-
-
Scaletsky, I.C.1
Fabbricotti, S.H.2
Carvalho, R.L.3
-
72
-
-
80855127602
-
Population dynamics and niche distribution of uropathogenic Escherichia coli during acute and chronic urinary tract infection
-
Schwartz D.J., Chen S.L., Hultgren S.J., Seed P.C. Population dynamics and niche distribution of uropathogenic Escherichia coli during acute and chronic urinary tract infection. Infect. Immun. 2011, 79:4250-4259.
-
(2011)
Infect. Immun.
, vol.79
, pp. 4250-4259
-
-
Schwartz, D.J.1
Chen, S.L.2
Hultgren, S.J.3
Seed, P.C.4
-
73
-
-
0037344503
-
Phenotypic diversity of enterotoxigenic Escherichia coli (ETEC) isolated from cases of travelers' diarrhea in Kenya
-
Shaheen H.I., Kamal K.A., Wasfy M.O., et al. Phenotypic diversity of enterotoxigenic Escherichia coli (ETEC) isolated from cases of travelers' diarrhea in Kenya. Internat. J. Infect. Dis. 2003, 7:35-38.
-
(2003)
Internat. J. Infect. Dis.
, vol.7
, pp. 35-38
-
-
Shaheen, H.I.1
Kamal, K.A.2
Wasfy, M.O.3
-
74
-
-
0036839944
-
A novel dispersin protein in enteroaggregative Escherichia coli
-
Sheikh J., Czeczulin J.R., Harrington S., et al. A novel dispersin protein in enteroaggregative Escherichia coli. J. Clin. Invest. 2002, 110:1329-1337.
-
(2002)
J. Clin. Invest.
, vol.110
, pp. 1329-1337
-
-
Sheikh, J.1
Czeczulin, J.R.2
Harrington, S.3
-
75
-
-
79957787637
-
Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)
-
Sims G.E., Kim S.H. Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proc. Natl. Acad. Sci. USA 2011, 108:8329-8334.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 8329-8334
-
-
Sims, G.E.1
Kim, S.H.2
-
76
-
-
7044262987
-
Transcriptome of uropathogenic Escherichia coli during urinary tract infection
-
Snyder J.A., Haugen B.J., Buckles E.L., et al. Transcriptome of uropathogenic Escherichia coli during urinary tract infection. Infect. Immun. 2004, 72:6373-6381.
-
(2004)
Infect. Immun.
, vol.72
, pp. 6373-6381
-
-
Snyder, J.A.1
Haugen, B.J.2
Buckles, E.L.3
-
77
-
-
0017106921
-
Molecular cloning of an Escherichia coli plasmid determinant that encodes for the production of heat-stable enterotoxin
-
So M., Boyer H.W., Betlach M., Falkow S. Molecular cloning of an Escherichia coli plasmid determinant that encodes for the production of heat-stable enterotoxin. J. Bacteriol. 1976, 128:463-472.
-
(1976)
J. Bacteriol.
, vol.128
, pp. 463-472
-
-
So, M.1
Boyer, H.W.2
Betlach, M.3
Falkow, S.4
-
78
-
-
0018142292
-
Characterization of an Escherichia coli plasmid encoding for synthesis of heat-labile toxin: molecular cloning of the toxin determinant
-
So M., Dallas W.S., Falkow S. Characterization of an Escherichia coli plasmid encoding for synthesis of heat-labile toxin: molecular cloning of the toxin determinant. Infect. Immun. 1978, 21:405-411.
-
(1978)
Infect. Immun.
, vol.21
, pp. 405-411
-
-
So, M.1
Dallas, W.S.2
Falkow, S.3
-
79
-
-
77955434397
-
Ancestral lineages of human enterotoxigenic Escherichia coli
-
Steinsland H., Lacher D.W., Sommerfelt H., Whittam T.S. Ancestral lineages of human enterotoxigenic Escherichia coli. J. Clin. Microbiol. 2010, 48:2916-2924.
-
(2010)
J. Clin. Microbiol.
, vol.48
, pp. 2916-2924
-
-
Steinsland, H.1
Lacher, D.W.2
Sommerfelt, H.3
Whittam, T.S.4
-
80
-
-
84877123139
-
Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli
-
Steyert S.R., Sahl J.W., Fraser-Liggett C.M., Teel L.D., Scheutz F., Rasko D.A. Comparative genomics and stx phage characterization of LEE-negative Shiga toxin-producing Escherichia coli. Front Cell Infect. Microbiol. 2012, 2:133.
-
(2012)
Front Cell Infect. Microbiol.
, vol.2
, pp. 133
-
-
Steyert, S.R.1
Sahl, J.W.2
Fraser-Liggett, C.M.3
Teel, L.D.4
Scheutz, F.5
Rasko, D.A.6
-
81
-
-
0029739331
-
Two pathogenicity islands in uropathogenic Escherichia coli J96: cosmid cloning and sample sequencing
-
Swenson D.L., Bukanov N.O., Berg D.E., Welch R.A. Two pathogenicity islands in uropathogenic Escherichia coli J96: cosmid cloning and sample sequencing. Infect. Immun. 1996, 64:3736-3743.
-
(1996)
Infect. Immun.
, vol.64
, pp. 3736-3743
-
-
Swenson, D.L.1
Bukanov, N.O.2
Berg, D.E.3
Welch, R.A.4
-
82
-
-
0032831061
-
Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid
-
Tobe T., Hayashi T., Han C.G., Schoolnik G.K., Ohtsubo E., Sasakawa C. Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid. Infect. Immun. 1999, 67:5455-5462.
-
(1999)
Infect. Immun.
, vol.67
, pp. 5455-5462
-
-
Tobe, T.1
Hayashi, T.2
Han, C.G.3
Schoolnik, G.K.4
Ohtsubo, E.5
Sasakawa, C.6
-
83
-
-
59249089471
-
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
-
Touchon M., Hoede C., Tenaillon O., et al. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. PLoS Genet 2009, 5:e1000344.
-
(2009)
PLoS Genet
, vol.5
-
-
Touchon, M.1
Hoede, C.2
Tenaillon, O.3
-
85
-
-
0033496732
-
Dr. Kiyoshi Shiga: discoverer of the dysentery bacillus
-
Trofa A.F., Ueno-Olsen H., Oiwa R., Yoshikawa M. Dr. Kiyoshi Shiga: discoverer of the dysentery bacillus. Clin. Infect. Dis. 1999, 29:1303-1306.
-
(1999)
Clin. Infect. Dis.
, vol.29
, pp. 1303-1306
-
-
Trofa, A.F.1
Ueno-Olsen, H.2
Oiwa, R.3
Yoshikawa, M.4
-
86
-
-
33845578493
-
Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages
-
Turner S.M., Chaudhuri R.R., Jiang Z.D., et al. Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages. J. Clin. Microbiol. 2006, 44:4528-4536.
-
(2006)
J. Clin. Microbiol.
, vol.44
, pp. 4528-4536
-
-
Turner, S.M.1
Chaudhuri, R.R.2
Jiang, Z.D.3
-
87
-
-
0023810974
-
Characterization of enteroadherent-aggregative Escherichia coli, a putative agent of diarrheal disease
-
Vial P.A., Robins-Browne R., Lior H., et al. Characterization of enteroadherent-aggregative Escherichia coli, a putative agent of diarrheal disease. J. Infect. Dis. 1988, 158:70-79.
-
(1988)
J. Infect. Dis.
, vol.158
, pp. 70-79
-
-
Vial, P.A.1
Robins-Browne, R.2
Lior, H.3
-
88
-
-
0025120983
-
Outbreak of diarrhoea due to Escherichia coli O111:B4 in schoolchildren and adults: association of Vi antigen-like reactivity
-
Viljanen M.K., Peltola T., Junnila S.Y., et al. Outbreak of diarrhoea due to Escherichia coli O111:B4 in schoolchildren and adults: association of Vi antigen-like reactivity. Lancet 1990, 336:831-834.
-
(1990)
Lancet
, vol.336
, pp. 831-834
-
-
Viljanen, M.K.1
Peltola, T.2
Junnila, S.Y.3
-
89
-
-
0029793458
-
Outbreaks of enterohaemorrhagic Escherichia coli O157:H7 infection by two different genotype strains in Japan, 1996
-
Watanabe H., Wada A., Inagaki Y., Itoh K.-i., Tamura K. Outbreaks of enterohaemorrhagic Escherichia coli O157:H7 infection by two different genotype strains in Japan, 1996. Lancet 1996, 348:831-832.
-
(1996)
Lancet
, vol.348
, pp. 831-832
-
-
Watanabe, H.1
Wada, A.2
Inagaki, Y.3
Itoh, K.-I.4
Tamura, K.5
-
90
-
-
0242416999
-
Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T
-
Wei J., Goldberg M.B., Burland V., et al. Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T. Infect. Immun. 2003, 71:2775-2786.
-
(2003)
Infect. Immun.
, vol.71
, pp. 2775-2786
-
-
Wei, J.1
Goldberg, M.B.2
Burland, V.3
-
91
-
-
0037168538
-
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
-
Welch R.A., Burland V., Plunkett G., et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli. Proc. Natl. Acad. Sci. USA 2002, 99:17020-17024.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 17020-17024
-
-
Welch, R.A.1
Burland, V.2
Plunkett, G.3
-
92
-
-
33646204418
-
Future directions for research on enterotoxigenic Escherichia coli vaccines for developing countries
-
WHO Future directions for research on enterotoxigenic Escherichia coli vaccines for developing countries. Wkly. Epidemiol. Rec 2006, 81:97-104.
-
(2006)
Wkly. Epidemiol. Rec
, vol.81
, pp. 97-104
-
-
-
93
-
-
28544440091
-
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
-
Yang F., Yang J., Zhang X., et al. Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res. 2005, 33:6445-6458.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6445-6458
-
-
Yang, F.1
Yang, J.2
Zhang, X.3
-
94
-
-
84865818495
-
A phylogenomic analysis of Escherichia coli/Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation
-
Zhang Y., Lin K. A phylogenomic analysis of Escherichia coli/Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation. BMC Evolut. Biol. 2012, 12:174.
-
(2012)
BMC Evolut. Biol.
, vol.12
, pp. 174
-
-
Zhang, Y.1
Lin, K.2
|