-
1
-
-
84857232496
-
Chikungunya: A re-emerging virus
-
Burt, F. J., Rolph, M. S., Rulli, N. E., Mahalingam, S., and Heise, M. T. (2012) Chikungunya: a re-emerging virus. Lancet 379, 662-671
-
(2012)
Lancet
, vol.379
, pp. 662-671
-
-
Burt, F.J.1
Rolph, M.S.2
Rulli, N.E.3
Mahalingam, S.4
Heise, M.T.5
-
2
-
-
0028088152
-
The alphaviruses: Gene expression, replication, and evolution
-
Strauss, J. H., and Strauss, E. G. (1994) The alphaviruses: gene expression, replication, and evolution. Microbiol. Rev. 58, 491-562
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 491-562
-
-
Strauss, J.H.1
Strauss, E.G.2
-
3
-
-
0036941105
-
Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site
-
Khan, A. H., Morita, K., del Carmen Parquet, M., Hasebe, F., Mathenge, E. G., and Igarashi, A. (2002) Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site. J. Gen. Virol. 83, 3075-3084 (Pubitemid 36054353)
-
(2002)
Journal of General Virology
, vol.83
, Issue.12
, pp. 3075-3084
-
-
Khan, A.H.1
Morita, K.2
Del, C.P.M.3
Hasebe, F.4
Mathenge, E.G.M.5
Igarashi, A.6
-
4
-
-
0028221438
-
Polypeptide requirements for assembly of functional Sindbis virus replication complexes: A model for the temporal regulation of minus- and plus-strand RNA synthesis
-
Lemm, J. A., Rümenapf, T., Strauss, E. G., Strauss, J. H., and Rice, C. M. (1994) Polypeptide requirements for assembly of functional Sindbis virus replication complexes: a model for the temporal regulation of minus- and plus-strand RNA synthesis. EMBO J. 13, 2925-2934 (Pubitemid 24191703)
-
(1994)
EMBO Journal
, vol.13
, Issue.12
, pp. 2925-2934
-
-
Lemm, J.A.1
Rumenapf, T.2
Strauss, E.G.3
Strauss, J.H.4
Rice, C.M.5
-
5
-
-
0142211312
-
Regulation of the Sequential Processing of Semliki Forest Virus Replicase Polyprotein
-
DOI 10.1074/jbc.M307481200
-
Vasiljeva, L., Merits, A., Golubtsov, A., Sizemskaja, V., Kääriäinen, L., and Ahola, T. (2003) Regulation of the sequential processing of Semliki Forest virus replicase polyprotein. J. Biol. Chem. 278, 41636-41645 (Pubitemid 37310420)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.43
, pp. 41636-41645
-
-
Vasiljeva, L.1
Merits, A.2
Golubtsov, A.3
Sizemskaja, V.4
Kaariainen, L.5
Ahola, T.6
-
6
-
-
0034536098
-
Membrane binding mechanism of an RNA virus-capping enzyme
-
DOI 10.1074/jbc.M004865200
-
Lampio, A., Kilpeläinen, I., Pesonen, S., Karhi, K., Auvinen, P., Somerharju, P., and Kääriäinen, L. (2000) Membrane binding mechanism of an RNA virus-capping enzyme. J. Biol. Chem. 275, 37853-37859 (Pubitemid 32004903)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.48
, pp. 37853-37859
-
-
Lampio, A.1
Kilpelainen, I.2
Pesonen, S.3
Karhi, K.4
Auvinen, P.5
Somerharju, P.6
Kaariainen, L.7
-
7
-
-
0025851067
-
Expression of Sindbis virus nsP1 and methyltransferase activity in Escherichia coli
-
Mi, S., and Stollar, V. (1991) Expression of Sindbis virus nsP1 and methyltransferase activity in Escherichia coli. Virology 184, 423-427
-
(1991)
Virology
, vol.184
, pp. 423-427
-
-
Mi, S.1
Stollar, V.2
-
8
-
-
0028833053
-
Reaction in alphavirus mRNA capping: Formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP
-
Ahola, T., and Kääriäinen, L. (1995) Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP. Proc. Natl. Acad. Sci. U.S.A. 92, 507-511
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 507-511
-
-
Ahola, T.1
Kääriäinen, L.2
-
9
-
-
0034625437
-
Identification of a novel function of the Alphavirus capping apparatus. RNA 5'-triphosphatase activity of Nsp2
-
DOI 10.1074/jbc.M910340199
-
Vasiljeva, L., Merits, A., Auvinen, P., and Kääriäinen, L. (2000) Identification of a novel function of the alphavirus capping apparatus. RNA 5′-triphosphatase activity of Nsp2. J. Biol. Chem. 275, 17281-17287 (Pubitemid 30430761)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.23
, pp. 17281-17287
-
-
Vasiljeva, L.1
Merits, A.2
Auvinen, P.3
Kaariainen, L.4
-
10
-
-
0028018141
-
ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2
-
Rikkonen, M., Peränen, J., and Kääriäinen, L. (1994) ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J. Virol. 68, 5804-5810 (Pubitemid 24258596)
-
(1994)
Journal of Virology
, vol.68
, Issue.9
, pp. 5804-5810
-
-
Rikkonen, M.1
Peranen, J.2
Kaariainen, L.3
-
11
-
-
79960452364
-
NTPase and 5′-RNA Triphosphatase activities of Chikungunya virus nsP2 protein
-
Karpe, Y. A., Aher, P. P., and Lole, K. S. (2011) NTPase and 5′-RNA Triphosphatase activities of Chikungunya virus nsP2 protein. PLoS One 6, e22336
-
(2011)
PLoS One
, vol.6
-
-
Karpe, Y.A.1
Aher, P.P.2
Lole, K.S.3
-
12
-
-
0024421374
-
Processing the nonstructural polyproteins of Sindbis virus: Nonstructural proteinase is in the C-terminal half of nsP2 and functions both in cis and in trans
-
Hardy, W. R., and Strauss, J. H. (1989) Processing the nonstructural polyproteins of Sindbis virus: nonstructural proteinase is in the C-terminal half of nsP2 and functions both in cis and in trans. J. Virol. 63, 4653-4664 (Pubitemid 19257840)
-
(1989)
Journal of Virology
, vol.63
, Issue.11
, pp. 4653-4664
-
-
Hardy, W.R.1
Strauss, J.H.2
-
13
-
-
0035903188
-
Site-specific protease activity of the carboxyl-terminal domain of Semliki Forest virus replicase protein nsP2
-
Vasiljeva, L., Valmu, L., Kääriäinen, L., and Merits, A. (2001) Site-specific protease activity of the carboxyl-terminal domain of Semliki Forest virus replicase protein nsP2. J. Biol. Chem. 276, 30786-30793
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30786-30793
-
-
Vasiljeva, L.1
Valmu, L.2
Kääriäinen, L.3
Merits, A.4
-
14
-
-
0033033813
-
RNA helicase activity of Semliki Forest virus replicase protein NSP2
-
Gomez de Cedrón, M., Ehsani, N., Mikkola, M. L., García, J. A., and Kääriäinen, L. (1999) RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett. 448, 19-22
-
(1999)
FEBS Lett
, vol.448
, pp. 19-22
-
-
Gomez De Cedrón, M.1
Ehsani, N.2
Mikkola, M.L.3
García, J.A.4
Kääriäinen, L.5
-
15
-
-
67449102614
-
The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket
-
Malet, H., Coutard, B., Jamal, S., Dutartre, H., Papageorgiou, N., Neuvonen, M., Ahola, T., Forrester, N., Gould, E. A., Lafitte, D., Ferron, F., Lescar, J., Gorbalenya, A. E., de Lamballerie, X., and Canard, B. (2009) The crystal structures of Chikungunya and Venezuelan equine encephalitis virus nsP3 macro domains define a conserved adenosine binding pocket. J. Virol. 83, 6534-6545
-
(2009)
J. Virol.
, vol.83
, pp. 6534-6545
-
-
Malet, H.1
Coutard, B.2
Jamal, S.3
Dutartre, H.4
Papageorgiou, N.5
Neuvonen, M.6
Ahola, T.7
Forrester, N.8
Gould, E.A.9
Lafitte, D.10
Ferron, F.11
Lescar, J.12
Gorbalenya, A.E.13
De Lamballerie, X.14
Canard, B.15
-
16
-
-
84867391808
-
Structural and functional insights into alphavirus polyprotein processing and pathogenesis
-
Shin, G., Yost, S. A., Miller, M. T., Elrod, E. J., Grakoui, A., and Marcotrigiano, J. (2012) Structural and functional insights into alphavirus polyprotein processing and pathogenesis. Proc. Natl. Acad. Sci. U.S.A. 109, 16534-16539
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 16534-16539
-
-
Shin, G.1
Yost, S.A.2
Miller, M.T.3
Elrod, E.J.4
Grakoui, A.5
Marcotrigiano, J.6
-
17
-
-
84873502939
-
O'nyong nyong virus molecular determinants of unique vector specificity reside in non-structural protein 3
-
Saxton-Shaw, K. D., Ledermann, J. P., Borland, E. M., Stovall, J. L., Mossel, E. C., Singh, A. J., Wilusz, J., and Powers, A. M. (2013) O'nyong nyong virus molecular determinants of unique vector specificity reside in non-structural protein 3. PLoS Negl. Trop. Dis. 7, e1931
-
(2013)
PLoS Negl. Trop. Dis.
, vol.7
-
-
Saxton-Shaw, K.D.1
Ledermann, J.P.2
Borland, E.M.3
Stovall, J.L.4
Mossel, E.C.5
Singh, A.J.6
Wilusz, J.7
Powers, A.M.8
-
18
-
-
58549095054
-
Characterization of purified Sindbis virus nsP4 RNA-dependent RNA polymerase activity in vitro
-
Rubach, J. K., Wasik, B. R., Rupp, J. C., Kuhn, R. J., Hardy, R. W., and Smith, J. L. (2009) Characterization of purified Sindbis virus nsP4 RNA-dependent RNA polymerase activity in vitro. Virology 384, 201-208
-
(2009)
Virology
, vol.384
, pp. 201-208
-
-
Rubach, J.K.1
Wasik, B.R.2
Rupp, J.C.3
Kuhn, R.J.4
Hardy, R.W.5
Smith, J.L.6
-
19
-
-
0025331987
-
Nuclear localization of Semliki Forest virus-specific nonstructural protein nsP2
-
Peränen, J., Rikkonen, M., Liljeström, P., and Kääriäinen, L. (1990) Nuclear localization of Semliki Forest virus-specific nonstructural protein nsP2. J. Virol. 64, 1888-1896
-
(1990)
J. Virol.
, vol.64
, pp. 1888-1896
-
-
Peränen, J.1
Rikkonen, M.2
Liljeström, P.3
Kääriäinen, L.4
-
20
-
-
33744937066
-
Sindbis virus nonstructural protein nsP2 is cytotoxic and inhibits cellular transcription
-
DOI 10.1128/JVI.02739-05
-
Garmashova, N., Gorchakov, R., Frolova, E., and Frolov, I. (2006) Sindbis virus nonstructural protein nsP2 is cytotoxic and inhibits cellular transcription. J. Virol. 80, 5686-5696 (Pubitemid 43849146)
-
(2006)
Journal of Virology
, vol.80
, Issue.12
, pp. 5686-5696
-
-
Garmashova, N.1
Gorchakov, R.2
Frolova, E.3
Frolov, I.4
-
21
-
-
84864122222
-
Evasion of the innate immune response: The Old World alphavirus nsP2 protein induces rapid degradation of Rpb1, a catalytic subunit of RNA polymerase II
-
Akhrymuk, I., Kulemzin, S. V., and Frolova, E. I. (2012) Evasion of the innate immune response: the Old World alphavirus nsP2 protein induces rapid degradation of Rpb1, a catalytic subunit of RNA polymerase II. J. Virol. 86, 7180-7191
-
(2012)
J. Virol.
, vol.86
, pp. 7180-7191
-
-
Akhrymuk, I.1
Kulemzin, S.V.2
Frolova, E.I.3
-
22
-
-
38749112603
-
Expression and biochemical characterization of nsP2 cysteine protease of Chikungunya virus
-
DOI 10.1016/j.virusres.2007.09.009, PII S0168170207003395
-
Pastorino, B. A., Peyrefitte, C. N., Almeras, L., Grandadam, M., Rolland, D., Tolou, H. J., and Bessaud, M. (2008) Expression and biochemical characterization of nsP2 cysteine protease of Chikungunya virus. Virus Res. 131, 293-298 (Pubitemid 351181341)
-
(2008)
Virus Research
, vol.131
, Issue.2
, pp. 293-298
-
-
Pastorino, B.A.M.1
Peyrefitte, C.N.2
Almeras, L.3
Grandadam, M.4
Rolland, D.5
Tolou, H.J.6
Bessaud, M.7
-
23
-
-
34548638261
-
Structure and mechanism of helicases and nucleic acid translocases
-
Singleton, M. R., Dillingham, M. S., and Wigley, D. B. (2007) Structure and mechanism of helicases and nucleic acid translocases. Annu. Rev. Biochem. 76, 23-50
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 23-50
-
-
Singleton, M.R.1
Dillingham, M.S.2
Wigley, D.B.3
-
24
-
-
0024344173
-
Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes
-
Gorbalenya, A. E., Koonin, E. V., Donchenko, A. P., and Blinov, V. M. (1989) Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17, 4713-4730 (Pubitemid 19165040)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.12
, pp. 4713-4730
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
Donchenko, A.P.3
Blinov, V.M.4
-
25
-
-
77955582184
-
SF1 and SF2 helicases: Family matters
-
Fairman-Williams, M. E., Guenther, U.-P., and Jankowsky, E. (2010) SF1 and SF2 helicases: family matters. Curr. Opin. Struct. Biol. 20, 313-324
-
(2010)
Curr. Opin. Struct. Biol.
, vol.20
, pp. 313-324
-
-
Fairman-Williams, M.E.1
Guenther, U.-P.2
Jankowsky, E.3
-
26
-
-
0029856618
-
Crystal structure of a DExx box DNA helicase
-
DOI 10.1038/384379a0
-
Subramanya, H. S., Bird, L. E., Brannigan, J. A., and Wigley, D. B. (1996) Crystal structure of a DExx box DNA helicase. Nature 384, 379-383 (Pubitemid 26408523)
-
(1996)
Nature
, vol.384
, Issue.6607
, pp. 379-383
-
-
Subramanya, H.S.1
Bird, L.E.2
Brannigan, J.A.3
Wigley, D.B.4
-
27
-
-
36849075152
-
The serine protease domain of hepatitis C viral NS3 activates RNA helicase activity by promoting the binding of RNA substrate
-
DOI 10.1074/jbc.M707165200
-
Beran, R. K., Serebrov, V., and Pyle, A. M. (2007) The serine protease domain of hepatitis C viral NS3 activates RNA helicase activity by promoting the binding of RNA substrate. J. Biol. Chem. 282, 34913-34920 (Pubitemid 350232430)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.48
, pp. 34913-34920
-
-
Beran, R.K.F.1
Serebrov, V.2
Pyle, A.M.3
-
28
-
-
47749152947
-
The two-component NS2BNS3 proteinase represses DNA unwinding activity of the West Nile virus NS3 helicase
-
Chernov, A. V., Shiryaev, S. A., Aleshin, A. E., Ratnikov, B. I., Smith, J. W., Liddington, R. C., and Strongin, A. Y. (2008) The two-component NS2BNS3 proteinase represses DNA unwinding activity of the West Nile virus NS3 helicase. J. Biol. Chem. 283, 17270-17278
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 17270-17278
-
-
Chernov, A.V.1
Shiryaev, S.A.2
Aleshin, A.E.3
Ratnikov, B.I.4
Smith, J.W.5
Liddington, R.C.6
Strongin, A.Y.7
-
29
-
-
77953306294
-
Flexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications
-
Luo, D., Wei, N., Doan, D. N., Paradkar, P. N., Chong, Y., Davidson, A. D., Kotaka, M., Lescar, J., and Vasudevan, S. G. (2010) Flexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications. J. Biol. Chem. 285, 18817-18827
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 18817-18827
-
-
Luo, D.1
Wei, N.2
Doan, D.N.3
Paradkar, P.N.4
Chong, Y.5
Davidson, A.D.6
Kotaka, M.7
Lescar, J.8
Vasudevan, S.G.9
-
30
-
-
84855936001
-
Macromolecular assemblydriven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein
-
Lulla, A., Lulla, V., and Merits, A. (2012) Macromolecular assemblydriven processing of the 2/3 cleavage site in the alphavirus replicase polyprotein. J. Virol. 86, 553-565
-
(2012)
J. Virol.
, vol.86
, pp. 553-565
-
-
Lulla, A.1
Lulla, V.2
Merits, A.3
-
31
-
-
33749064607
-
A minimal region in the NTPase/helicase domain of the TGBp1 plant virus movement protein is responsible for ATPase activity and cooperative RNA binding
-
DOI 10.1099/vir.0.81971-0
-
Leshchiner, A. D., Solovyev, A. G., Morozov, S. Y., and Kalinina, N. O. (2006) A minimal region in the NTPase/helicase domain of the TGBp1 plant virus movement protein is responsible for ATPase activity and cooperative RNA binding. J. Gen. Virol. 87, 3087-3095 (Pubitemid 44463918)
-
(2006)
Journal of General Virology
, vol.87
, Issue.10
, pp. 3087-3095
-
-
Leshchiner, A.D.1
Solovyev, A.G.2
Morozov, S.Yu.3
Kalinina, N.O.4
-
32
-
-
63849246525
-
Protein structure prediction on the web: A case study using the Phyre server
-
Kelley, L. A., and Sternberg, M. J. (2009) Protein structure prediction on the web: a case study using the Phyre server. Nat. Protoc. 4, 363-371
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
33
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang, Y. (2008) I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9, 40
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
34
-
-
48849113878
-
Comparative protein structure modeling using MODELLER
-
Chapter 2, Unit 2.9
-
Eswar, N., Webb, B., Marti-Renom, M. A., Madhusudhan, M. S., Eramian, D., Shen, M.-Y., Pieper, U., and Sali, A. (2007) Comparative protein structure modeling using MODELLER. Curr. Protoc. Prot. Sci. Chapter 2, Unit 2.9
-
(2007)
Curr. Protoc. Prot. Sci.
-
-
Eswar, N.1
Webb, B.2
Marti-Renom, M.A.3
Madhusudhan, M.S.4
Eramian, D.5
Shen, M.-Y.6
Pieper, U.7
Sali, A.8
-
36
-
-
33646721756
-
Molecular determinants of substrate specificity for Semliki Forest virus nonstructural protease
-
Lulla, A., Lulla, V., Tints, K., Ahola, T., and Merits, A. (2006) Molecular determinants of substrate specificity for Semliki Forest virus nonstructural protease. J. Virol. 80, 5413-5422
-
(2006)
J. Virol.
, vol.80
, pp. 5413-5422
-
-
Lulla, A.1
Lulla, V.2
Tints, K.3
Ahola, T.4
Merits, A.5
-
37
-
-
34250348569
-
A combined approach to improving large-scale production of tobacco etch virus protease
-
DOI 10.1016/j.pep.2007.04.013, PII S1046592807001143
-
Blommel, P. G., and Fox, B. G. (2007) A combined approach to improving large-scale production of tobacco etch virus protease. Protein Expr. Purif. 55, 53-68 (Pubitemid 47259692)
-
(2007)
Protein Expression and Purification
, vol.55
, Issue.1
, pp. 53-68
-
-
Blommel, P.G.1
Fox, B.G.2
-
38
-
-
3242798849
-
A simple method for improving protein solubility and long-term stability
-
DOI 10.1021/ja049297h
-
Golovanov, A. P., Hautbergue, G. M., Wilson, S. A., and Lian, L.-Y. (2004) A simple method for improving protein solubility and long-term stability. J. Am. Chem. Soc. 126, 8933-8939 (Pubitemid 38971066)
-
(2004)
Journal of the American Chemical Society
, vol.126
, Issue.29
, pp. 8933-8939
-
-
Golovanov, A.P.1
Hautbergue, G.M.2
Wilson, S.A.3
Lian, L.-Y.4
-
39
-
-
0026530383
-
Quantitative analysis of protein far UV circular dichroism spectra by neural networks
-
Böhm, G., Muhr, R., and Jaenicke, R. (1992) Quantitative analysis of protein far UV circular dichroism spectra by neural networks. Protein Eng. 5, 191-195
-
(1992)
Protein Eng
, vol.5
, pp. 191-195
-
-
Böhm, G.1
Muhr, R.2
Jaenicke, R.3
-
40
-
-
84934444345
-
Duplex unwinding and RNP remodeling with RNA helicases
-
Jankowsky, E., and Fairman, M. E. (2008) Duplex unwinding and RNP remodeling with RNA helicases. Methods Mol. Biol. 488, 343-355
-
(2008)
Methods Mol. Biol.
, vol.488
, pp. 343-355
-
-
Jankowsky, E.1
Fairman, M.E.2
-
41
-
-
77949364614
-
NTPase and 5′ to 3′ RNA duplex-unwinding activities of the hepatitis E virus helicase domain
-
Karpe, Y. A., and Lole, K. S. (2010) NTPase and 5′ to 3′ RNA duplex-unwinding activities of the hepatitis E virus helicase domain. J. Virol. 84, 3595-3602
-
(2010)
J. Virol.
, vol.84
, pp. 3595-3602
-
-
Karpe, Y.A.1
Lole, K.S.2
-
42
-
-
84865402504
-
Mechanism of nucleic acid unwinding by SARS-CoV helicase
-
Adedeji, A. O., Marchand, B., Te Velthuis, A. J., Snijder, E. J., Weiss, S., Eoff, R. L., Singh, K., and Sarafianos, S. G. (2012) Mechanism of nucleic acid unwinding by SARS-CoV helicase. PLoS One 7, e36521
-
(2012)
PLoS One
, vol.7
-
-
Adedeji, A.O.1
Marchand, B.2
Te Velthuis, A.J.3
Snijder, E.J.4
Weiss, S.5
Eoff, R.L.6
Singh, K.7
Sarafianos, S.G.8
-
43
-
-
33748304343
-
The Crystal Structure of the Venezuelan Equine Encephalitis Alphavirus nsP2 Protease
-
DOI 10.1016/j.str.2006.07.010, PII S0969212606003339
-
Russo, A. T., White, M. A., and Watowich, S. J. (2006) The crystal structure of the Venezuelan equine encephalitis alphavirus nsP2 protease. Structure 14, 1449-1458 (Pubitemid 44331622)
-
(2006)
Structure
, vol.14
, Issue.9
, pp. 1449-1458
-
-
Russo, A.T.1
White, M.A.2
Watowich, S.J.3
-
44
-
-
84863760243
-
Crystal structure of the superfamily 1 helicase from tomato mosaic virus
-
Nishikiori, M., Sugiyama, S., Xiang, H., Niiyama, M., Ishibashi, K., Inoue, T., Ishikawa, M., Matsumura, H., and Katoh, E. (2012) Crystal structure of the superfamily 1 helicase from tomato mosaic virus. J. Virol. 86, 7565-7576
-
(2012)
J. Virol.
, vol.86
, pp. 7565-7576
-
-
Nishikiori, M.1
Sugiyama, S.2
Xiang, H.3
Niiyama, M.4
Ishibashi, K.5
Inoue, T.6
Ishikawa, M.7
Matsumura, H.8
Katoh, E.9
-
45
-
-
33846186825
-
Structural and functional insights into the human Upf1 helicase core
-
DOI 10.1038/sj.emboj.7601464, PII 7601464
-
Cheng, Z., Muhlrad, D., Lim, M. K., Parker, R., and Song, H. (2007) Structural and functional insights into the human Upf1 helicase core. EMBO J. 26, 253-264 (Pubitemid 46094716)
-
(2007)
EMBO Journal
, vol.26
, Issue.1
, pp. 253-264
-
-
Cheng, Z.1
Muhlrad, D.2
Lim, M.K.3
Parker, R.4
Song, H.5
-
46
-
-
0026500416
-
The structure of the E. Coli recA protein monomer and polymer
-
Story, R. M., Weber, I. T., and Steitz, T. A. (1992) The structure of the E. coli recA protein monomer and polymer. Nature 355, 318-325
-
(1992)
Nature
, vol.355
, pp. 318-325
-
-
Story, R.M.1
Weber, I.T.2
Steitz, T.A.3
-
48
-
-
78651307083
-
RNA Helicases
-
Royal Society of Chemistry, London
-
Jankowsky, E., and Fairman-Williams, M. E. (2010) in RNA Helicases, RSC Biomolecular Series Vol. 19, pp. 1-31, Royal Society of Chemistry, London
-
(2010)
RSC Biomolecular Series
, vol.19
, pp. 1-31
-
-
Jankowsky, E.1
Fairman-Williams, M.E.2
-
49
-
-
0031937629
-
Requirement for an aromatic amino acid or histidine at the N terminus of sindbis virus RNA polymerase
-
Shirako, Y., and Strauss, J. H. (1998) Requirement for an aromatic amino acid or histidine at the N terminus of Sindbis virus RNA polymerase. J. Virol. 72, 2310-2315 (Pubitemid 28100791)
-
(1998)
Journal of Virology
, vol.72
, Issue.3
, pp. 2310-2315
-
-
Shirako, Y.1
Strauss, J.H.2
-
50
-
-
79952459386
-
SUMO fusion technology for enhanced protein expression and purification in prokaryotes and eukaryotes
-
Peroutka, R. J., 3rd, Orcutt, S. J., Strickler, J. E., and Butt, T. R. (2011) SUMO fusion technology for enhanced protein expression and purification in prokaryotes and eukaryotes. Methods Mol. Biol. 705, 15-30
-
(2011)
Methods Mol. Biol.
, vol.705
, pp. 15-30
-
-
Peroutka III, R.J.1
Orcutt, S.J.2
Strickler, J.E.3
Butt, T.R.4
-
51
-
-
77950691139
-
A unified method for purification of basic proteins
-
Adhikari, S., Manthena, P. V., Sajwan, K., Kota, K. K., and Roy, R. (2010) A unified method for purification of basic proteins. Anal. Biochem. 400, 203-206
-
(2010)
Anal. Biochem.
, vol.400
, pp. 203-206
-
-
Adhikari, S.1
Manthena, P.V.2
Sajwan, K.3
Kota, K.K.4
Roy, R.5
-
52
-
-
80054052318
-
An overview of enzymatic reagents for the removal of affinity tags
-
Waugh, D. S. (2011) An overview of enzymatic reagents for the removal of affinity tags. Protein Expr. Purif. 80, 283-293
-
(2011)
Protein Expr. Purif.
, vol.80
, pp. 283-293
-
-
Waugh, D.S.1
-
53
-
-
0029911607
-
Identification of an RNA-stimulated NTPase in the predicted helicase sequence of the Rubella virus nonstructural polyprotein
-
DOI 10.1006/viro.1996.0125
-
Gros, C., and Wengler, G. (1996) Identification of an RNA-stimulated NTPase in the predicted helicase sequence of the Rubella virus nonstructural polyprotein. Virology 217, 367-372 (Pubitemid 26103625)
-
(1996)
Virology
, vol.217
, Issue.1
, pp. 367-372
-
-
Gros, C.1
Wengler, G.2
-
54
-
-
0029893874
-
Mechanisms of helicase-catalyzed DNA unwinding
-
Lohman, T. M., and Bjornson, K. P. (1996) Mechanisms of helicase-catalyzed DNA unwinding. Annu. Rev. Biochem. 65, 169-214 (Pubitemid 26250608)
-
(1996)
Annual Review of Biochemistry
, vol.65
, pp. 169-214
-
-
Lohman, T.M.1
Bjornson, K.P.2
-
55
-
-
2542468381
-
The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity
-
DOI 10.1074/jbc.M403257200
-
Levin, M. K., Wang, Y.-H., and Patel, S. S. (2004) The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity. J. Biol. Chem. 279, 26005-26012 (Pubitemid 38798742)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.25
, pp. 26005-26012
-
-
Levin, M.K.1
Wang, Y.-H.2
Patel, S.S.3
-
56
-
-
3242884682
-
Enhanced nucleic acid binding to ATP-bound hepatitis C virus NS3 helicase at low pH activates RNA unwinding
-
DOI 10.1093/nar/gkh743
-
Lam, A. M., Rypma, R. S., and Frick, D. N. (2004) Enhanced nucleic acid binding to ATP-bound hepatitis C virus NS3 helicase at low pH activates RNA unwinding. Nucleic Acids Res. 32, 4060-4070 (Pubitemid 39199098)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.13
, pp. 4060-4070
-
-
Lam, A.M.I.1
Rypma, R.S.2
Frick, D.N.3
-
57
-
-
76249111702
-
Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism
-
Gu, M., and Rice, C. M. (2010) Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism. Proc. Natl. Acad. Sci. U.S.A. 107, 521-528
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 521-528
-
-
Gu, M.1
Rice, C.M.2
-
58
-
-
77951251882
-
The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias
-
Taylor, S. D., Solem, A., Kawaoka, J., and Pyle, A. M. (2010) The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias. J. Biol. Chem. 285, 11692-11703
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 11692-11703
-
-
Taylor, S.D.1
Solem, A.2
Kawaoka, J.3
Pyle, A.M.4
-
59
-
-
78649814911
-
Cooperative translocation enhances the unwinding of duplexDNA by SARS coronavirus helicase nsP13
-
Lee, N.-R., Kwon, H.-M., Park, K., Oh, S., Jeong, Y.-J., and Kim, D.-E. (2010) Cooperative translocation enhances the unwinding of duplexDNA by SARS coronavirus helicase nsP13. Nucleic Acids Res. 38, 7626-7636
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7626-7636
-
-
Lee, N.-R.1
Kwon, H.-M.2
Park, K.3
Oh, S.4
Jeong, Y.-J.5
Kim, D.-E.6
-
60
-
-
39049131090
-
RNA chaperones, RNA annealers and RNA helicases
-
Rajkowitsch, L., Chen, D., Stampfl, S., Semrad, K., Waldsich, C., Mayer, O., Jantsch, M. F., Konrat, R., Bläsi, U., and Schroeder, R. (2007) RNA chaperones, RNA annealers and RNA helicases. RNA Biol. 4, 118-130 (Pubitemid 351237913)
-
(2007)
RNA Biology
, vol.4
, Issue.3
, pp. 118-130
-
-
Rajkowitsch, L.1
Chen, D.2
Stampfl, S.3
Semrad, K.4
Waldsich, C.5
Mayer, O.6
Jantsch, M.F.7
Konrat, R.8
Blasi, U.9
Schroeder, R.10
-
61
-
-
26644450709
-
ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1
-
DOI 10.1021/bi0508946
-
Yang, Q., and Jankowsky, E. (2005) ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1. Biochemistry 44, 13591-13601 (Pubitemid 41443687)
-
(2005)
Biochemistry
, vol.44
, Issue.41
, pp. 13591-13601
-
-
Yang, Q.1
Jankowsky, E.2
-
62
-
-
0346463036
-
The Nonstructural Protein 3 Protease/Helicase Requires an Intact Protease Domain to Unwind Duplex RNA Efficiently
-
DOI 10.1074/jbc.M310630200
-
Frick, D. N., Rypma, R. S., Lam, A. M., and Gu, B. (2004) The nonstructural protein 3 protease/helicase requires an intact protease domain to unwind duplex RNA efficiently. J. Biol. Chem. 279, 1269-1280 (Pubitemid 38082651)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.2
, pp. 1269-1280
-
-
Frick, D.N.1
Rypma, R.S.2
Lam, A.M.I.3
Gu, B.4
-
63
-
-
0024462161
-
Viral proteins containing the purine NTP-binding sequence pattern
-
Gorbalenya, A. E., and Koonin, E. V (1989) Viral proteins containing the purine NTP-binding sequence pattern. Nucleic Acids Res. 17, 8413-8440 (Pubitemid 19273853)
-
(1989)
Nucleic Acids Research
, vol.17
, Issue.21
, pp. 8413-8440
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
64
-
-
22844443626
-
Modulation of the nucleoside triphosphatase/RNA helicase and 5′-RNA triphosphatase activities of dengue virus type 2 nonstructural protein 3 (NS3) by interaction with NS5, the RNA-dependent RNA polymerase
-
DOI 10.1074/jbc.M501393200
-
Yon, C., Teramoto, T., Mueller, N., Phelan, J., Ganesh, V. K., Murthy, K. H., and Padmanabhan, R. (2005) Modulation of the nucleoside triphosphatase/RNA helicase and 5′-RNA triphosphatase activities of Dengue virus type 2 nonstructural protein 3 (NS3) by interaction with NS5, the RNA-dependent RNA polymerase. J. Biol. Chem. 280, 27412-27419 (Pubitemid 41040783)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.29
, pp. 27412-27419
-
-
Yon, C.1
Teramoto, T.2
Mueller, N.3
Phelan, J.4
Ganesh, V.K.5
Murthy, K.H.M.6
Padmanabhan, R.7
-
65
-
-
0032976077
-
The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids
-
Li, H., Clum, S., You, S., Ebner, K. E., and Padmanabhan, R. (1999) The serine protease and RNA-stimulated nucleoside triphosphatase and RNA helicase functional domains of dengue virus type 2 NS3 converge within a region of 20 amino acids. J. Virol. 73, 3108-3116 (Pubitemid 29135701)
-
(1999)
Journal of Virology
, vol.73
, Issue.4
, pp. 3108-3116
-
-
Li, H.1
Clum, S.2
You, S.3
Ebner, K.E.4
Padmanabhan, R.5
-
66
-
-
47749118026
-
Role for conserved residues of Sindbis virus nonstructural protein 2 methyltrans-ferase-like domain in regulation of minus-strand synthesis and development of cytopathic infection
-
Mayuri, Geders, T. W., Smith, J. L., and Kuhn, R. J. (2008) Role for conserved residues of Sindbis virus nonstructural protein 2 methyltrans-ferase- like domain in regulation of minus-strand synthesis and development of cytopathic infection. J. Virol. 82, 7284-7297
-
(2008)
J. Virol.
, vol.82
, pp. 7284-7297
-
-
Mayuri1
Geders, T.W.2
Smith, J.L.3
Kuhn, R.J.4
-
67
-
-
84883309644
-
Presentation overrides specificity: Probing the plasticity of alphaviral proteolytic activity through mutational analysis
-
Lulla, V., Karo-Astover, L., Rausalu, K., Merits, A., and Lulla, A. (2013) Presentation overrides specificity: probing the plasticity of alphaviral proteolytic activity through mutational analysis. J. Virol. 87, 10207-10220
-
(2013)
J. Virol.
, vol.87
, pp. 10207-10220
-
-
Lulla, V.1
Karo-Astover, L.2
Rausalu, K.3
Merits, A.4
Lulla, A.5
-
68
-
-
77955773469
-
Structural basis for substrate specificity of alphavirus nsP2 proteases
-
Russo, A. T., Malmstrom, R. D., White, M. A., and Watowich, S. J. (2010) Structural basis for substrate specificity of alphavirus nsP2 proteases. J. Mol. Graph. Model. 29, 46-53
-
(2010)
J. Mol. Graph. Model.
, vol.29
, pp. 46-53
-
-
Russo, A.T.1
Malmstrom, R.D.2
White, M.A.3
Watowich, S.J.4
-
69
-
-
0027475009
-
Roles of nonstructural polyproteins and cleavage products in regulating Sindbis virus RNA replication and transcription
-
Lemm, J. A., and Rice, C. M. (1993) Roles of nonstructural polyproteins and cleavage products in regulating Sindbis virus RNA replication and transcription. J. Virol. 67, 1916-1926 (Pubitemid 23088364)
-
(1993)
Journal of Virology
, vol.67
, Issue.4
, pp. 1916-1926
-
-
Lemm, J.A.1
Rice, C.M.2
-
70
-
-
84877321679
-
Polyprotein context regulates the activity of poliovirus 2CATPase bound to bilayer nanodiscs
-
Springer, C. L., Huntoon, H. P., and Peersen, O. B. (2013) Polyprotein context regulates the activity of poliovirus 2CATPase bound to bilayer nanodiscs. J. Virol. 87, 5994-6004
-
(2013)
J. Virol.
, vol.87
, pp. 5994-6004
-
-
Springer, C.L.1
Huntoon, H.P.2
Peersen, O.B.3
-
71
-
-
0026650834
-
Nuclear and nucleolar targeting signals of Semliki Forest virus nonstructural protein nsP2
-
Rikkonen, M., Peränen, J., and Kääriäinen, L. (1992) Nuclear and nucleolar targeting signals of Semliki Forest virus nonstructural protein nsP2. Virology 189, 462-473
-
(1992)
Virology
, vol.189
, pp. 462-473
-
-
Rikkonen, M.1
Peränen, J.2
Kääriäinen, L.3
-
72
-
-
77954505687
-
Phosphatidy-linositol 3-kinase-, actin-, and microtubule-dependent transport of Semliki Forest virus replication complexes from the plasma membrane to modified lysosomes
-
Spuul, P., Balistreri, G., Kääriäinen, L., and Ahola, T. (2010) Phosphatidy-linositol 3-kinase-, actin-, and microtubule-dependent transport of Semliki Forest virus replication complexes from the plasma membrane to modified lysosomes. J. Virol. 84, 7543-7557
-
(2010)
J. Virol.
, vol.84
, pp. 7543-7557
-
-
Spuul, P.1
Balistreri, G.2
Kääriäinen, L.3
Ahola, T.4
-
73
-
-
84877310387
-
Unwinding and rewinding: Double faces of helicase?
-
Wu, Y. (2012) Unwinding and rewinding: double faces of helicase? J. Nucleic Acids 2012, 140601
-
(2012)
J. Nucleic Acids
, vol.2012
, pp. 140601
-
-
Wu, Y.1
-
74
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
Pyle, A. M. (2008) Translocation and unwinding mechanisms of RNA and DNA helicases. Annu. Rev. Biophys. 37, 317-336
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
75
-
-
80053567694
-
RNA helicases and remodeling proteins
-
Pyle, A. M. (2011) RNA helicases and remodeling proteins. Curr. Opin. Chem. Biol. 15, 636-642
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 636-642
-
-
Pyle, A.M.1
-
76
-
-
78650854687
-
RNA helicases at work: Binding and rearranging
-
Jankowsky, E. (2011) RNA helicases at work: binding and rearranging. Trends Biochem. Sci. 36, 19-29
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
77
-
-
0030011522
-
Functional significance of the nuclear-targeting and NTP-binding motifs of Semliki Forest virus nonstructural protein nsP2
-
Rikkonen, M. (1996) Functional significance of the nuclear-targeting and NTP-binding motifs of Semliki Forest virus nonstructural protein nsP2. Virology 218, 352-361
-
(1996)
Virology
, vol.218
, pp. 352-361
-
-
Rikkonen, M.1
-
78
-
-
33845999513
-
Template requirements for recognition and copying by Sindbis virus RNA-dependent RNA polymerase
-
DOI 10.1016/j.virol.2006.08.022, PII S0042682206005824
-
Thal, M. A., Wasik, B. R., Posto, J., and Hardy, R. W. (2007) Template requirements for recognition and copying by Sindbis virus RNA-dependent RNA polymerase. Virology 358, 221-232 (Pubitemid 46048875)
-
(2007)
Virology
, vol.358
, Issue.1
, pp. 221-232
-
-
Thal, M.A.1
Wasik, B.R.2
Posto, J.3
Hardy, R.W.4
-
79
-
-
0018664535
-
Replicative form of Semliki Forest virus RNA contains an unpaired guanosine
-
DOI 10.1038/282754a0
-
Wengler, G., Wengler, G., and Gross, H. S. (1979) Replicative form of Semliki Forest virus RNA contains an unpaired guanosine. Nature 282, 754-756 (Pubitemid 10217562)
-
(1979)
Nature
, vol.282
, Issue.5740
, pp. 754-756
-
-
Wengler, G.1
Wengler, G.2
Gross, H.J.3
-
80
-
-
31944440868
-
The role of the 3′ terminus of the Sindbis virus genome in minus-strand initiation site selection
-
Hardy, R. W. (2006) The role of the 3′ terminus of the Sindbis virus genome in minus-strand initiation site selection. Virology 345, 520-531
-
(2006)
Virology
, vol.345
, pp. 520-531
-
-
Hardy, R.W.1
-
81
-
-
69249212445
-
Structural and functional elements of the promoter encoded by the 5′ untranslated region of the Venezuelan equine encephalitis virus genome
-
Kulasegaran-Shylini, R., Atasheva, S., Gorenstein, D. G., and Frolov, I. (2009) Structural and functional elements of the promoter encoded by the 5′ untranslated region of the Venezuelan equine encephalitis virus genome. J. Virol. 83, 8327-8339
-
(2009)
J. Virol.
, vol.83
, pp. 8327-8339
-
-
Kulasegaran-Shylini, R.1
Atasheva, S.2
Gorenstein, D.G.3
Frolov, I.4
-
82
-
-
78751584740
-
Visualizing ATP-dependent RNA translocation by the NS3 helicase from HCV
-
Appleby, T. C., Anderson, R., Fedorova, O., Pyle, A. M., Wang, R., Liu, X., Brendza, K. M., and Somoza, J. R. (2011) Visualizing ATP-dependent RNA translocation by the NS3 helicase from HCV. J. Mol. Biol. 405, 1139-1153
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 1139-1153
-
-
Appleby, T.C.1
Anderson, R.2
Fedorova, O.3
Pyle, A.M.4
Wang, R.5
Liu, X.6
Brendza, K.M.7
Somoza, J.R.8
|