-
1
-
-
77952974276
-
Helicases: an overview
-
Abdelhaleem M. 2010. Helicases: an overview. Methods Mol. Biol. 587: 1-12.
-
(2010)
Methods Mol. Biol.
, vol.587
, pp. 1-12
-
-
Abdelhaleem, M.1
-
2
-
-
0030986177
-
Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement
-
Adams PD, Pannu NS, Read RJ, Brunger AT. 1997. Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement. Proc. Natl. Acad. Sci. U. S. A. 94:5018 -5023.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 5018-5023
-
-
Adams, P.D.1
Pannu, N.S.2
Read, R.J.3
Brunger, A.T.4
-
3
-
-
27144464816
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Amberg DC, Burke DJ, Strathern JN. 2005. Methods in yeast genetics, p 161-164. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2005)
Methods in yeast genetics
, pp. 161-164
-
-
Amberg, D.C.1
Burke, D.J.2
Strathern, J.N.3
-
5
-
-
33846186825
-
Structural and functional insights into the human Upf1 helicase core
-
Cheng Z, Muhlrad D, Lim MK, Parker R, Song H. 2007. Structural and functional insights into the human Upf1 helicase core. EMBO J. 26:253- 264.
-
(2007)
EMBO J
, vol.26
, pp. 253-264
-
-
Cheng, Z.1
Muhlrad, D.2
Lim, M.K.3
Parker, R.4
Song, H.5
-
8
-
-
0002648903
-
The helicase domain of the TMV replicase proteins induces the N-mediated defence response in tobacco
-
Erickson FL, et al. 1999. The helicase domain of the TMV replicase proteins induces the N-mediated defence response in tobacco. Plant J. 18:67-75.
-
(1999)
Plant J
, vol.18
, pp. 67-75
-
-
Erickson, F.L.1
-
10
-
-
0000751742
-
Nucleotide sequence of tobacco mosaic virus RNA
-
Goelet P, et al. 1982. Nucleotide sequence of tobacco mosaic virus RNA. Proc. Natl. Acad. Sci. U. S. A. 79:5818 -5822.
-
(1982)
Proc. Natl. Acad. Sci. U. S. A.
, vol.79
, pp. 5818-5822
-
-
Goelet, P.1
-
11
-
-
0027182114
-
Helicases: amino acid sequence comparisons and structure-function relationships
-
Gorbalenya AE, Koonin EV. 1993. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3:419-429.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
12
-
-
0024344173
-
Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes
-
Gorbalenya AE, Koonin EV, Donchenko AP, Blinov VM. 1989. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res. 17:4713- 4730.
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 4713-4730
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
Donchenko, A.P.3
Blinov, V.M.4
-
13
-
-
0035836370
-
Identification and functional analysis of an interaction between domains of the 126/183-kDa replicase-associated proteins of tobacco mosaic virus
-
Goregaoker SP, Lewandowski DJ, Culver JN. 2001. Identification and functional analysis of an interaction between domains of the 126/183-kDa replicase-associated proteins of tobacco mosaic virus. Virology 282:320- 328.
-
(2001)
Virology
, vol.282
, pp. 320-328
-
-
Goregaoker, S.P.1
Lewandowski, D.J.2
Culver, J.N.3
-
14
-
-
13844254123
-
Binding and unwinding: SF3 viral helicases
-
Hickman AB, Dyda F. 2005. Binding and unwinding: SF3 viral helicases. Curr. Opin. Struct. Biol. 15:77- 85.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 77-85
-
-
Hickman, A.B.1
Dyda, F.2
-
15
-
-
77954288774
-
Dali server: conservation mapping in 3D
-
Holm L, Rosenstrom P. 2010. Dali server: conservation mapping in 3D. Nucleic Acids Res. 38:W545-W549.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Holm, L.1
Rosenstrom, P.2
-
16
-
-
35348850024
-
An inhibitor of viral RNA replication is encoded by a plant resistance gene
-
Ishibashi K, Masuda K, Naito S, Meshi T, Ishikawa M. 2007. An inhibitor of viral RNA replication is encoded by a plant resistance gene. Proc. Natl. Acad. Sci. U. S. A. 104:13833-13838.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 13833-13838
-
-
Ishibashi, K.1
Masuda, K.2
Naito, S.3
Meshi, T.4
Ishikawa, M.5
-
17
-
-
78149335264
-
Interactions between tobamovirus replication proteins and cellular factors: their impacts on virus multiplication
-
Ishibashi K, Nishikiori M, Ishikawa M. 2010. Interactions between tobamovirus replication proteins and cellular factors: their impacts on virus multiplication. Mol. Plant Microbe Interact. 23:1413-1419.
-
(2010)
Mol. Plant Microbe Interact.
, vol.23
, pp. 1413-1419
-
-
Ishibashi, K.1
Nishikiori, M.2
Ishikawa, M.3
-
18
-
-
0026002497
-
Isolation of mutants of Arabidopsis thaliana in which accumulation of tobacco mosaic virus coat protein is reduced to low levels
-
Ishikawa M, Obata F, Kumagai T, Ohno T. 1991. Isolation of mutants of Arabidopsis thaliana in which accumulation of tobacco mosaic virus coat protein is reduced to low levels. Mol. Gen. Genet. 230:33-38.
-
(1991)
Mol. Gen. Genet.
, vol.230
, pp. 33-38
-
-
Ishikawa, M.1
Obata, F.2
Kumagai, T.3
Ohno, T.4
-
19
-
-
78650854687
-
RNA helicases at work: binding and rearranging
-
Jankowsky E. 2011. RNA helicases at work: binding and rearranging. Trends Biochem. Sci. 36:19 -29.
-
(2011)
Trends Biochem. Sci.
, vol.36
, pp. 19-29
-
-
Jankowsky, E.1
-
20
-
-
0030897821
-
Virus-encoded RNA helicases
-
Kadare G, Haenni AL. 1997. Virus-encoded RNA helicases. J. Virol. 71:2583-2590.
-
(1997)
J. Virol.
, vol.71
, pp. 2583-2590
-
-
Kadare, G.1
Haenni, A.L.2
-
21
-
-
0032518490
-
Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding
-
Kim JL, et al. 1998. Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding. Structure 6:89 -100.
-
(1998)
Structure
, vol.6
, pp. 89-100
-
-
Kim, J.L.1
-
22
-
-
16044364658
-
Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide
-
Kim JL, et al. 1996. Crystal structure of the hepatitis C virus NS3 protease domain complexed with a synthetic NS4A cofactor peptide. Cell 87:343- 355.
-
(1996)
Cell
, vol.87
, pp. 343-355
-
-
Kim, J.L.1
-
23
-
-
51649095289
-
RNA interference screen for human genes associated with West Nile virus infection
-
Krishnan MN, et al. 2008. RNA interference screen for human genes associated with West Nile virus infection. Nature 455:242-245.
-
(2008)
Nature
, vol.455
, pp. 242-245
-
-
Krishnan, M.N.1
-
24
-
-
0141789662
-
Tomato mosaic virus replication protein suppresses virus-targeted posttranscriptional gene silencing
-
Kubota K, Tsuda S, Tamai A, Meshi T. 2003. Tomato mosaic virus replication protein suppresses virus-targeted posttranscriptional gene silencing. J. Virol. 77:11016 -11026.
-
(2003)
J. Virol.
, vol.77
, pp. 11016-11026
-
-
Kubota, K.1
Tsuda, S.2
Tamai, A.3
Meshi, T.4
-
25
-
-
0347364637
-
Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus
-
Kushner DB, et al. 2003. Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus. Proc. Natl. Acad. Sci. U. S. A. 100:15764 -15769.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 15764-15769
-
-
Kushner, D.B.1
-
27
-
-
33845657428
-
UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke
-
Lee JY, Yang W. 2006. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell 127:1349 -1360.
-
(2006)
Cell
, vol.127
, pp. 1349-1360
-
-
Lee, J.Y.1
Yang, W.2
-
28
-
-
0022273106
-
1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type
-
LeMaster DM, Richards FM. 1985. 1H-15N heteronuclear NMR studies of Escherichia coli thioredoxin in samples isotopically labeled by residue type. Biochemistry 24:7263-7268.
-
(1985)
Biochemistry
, vol.24
, pp. 7263-7268
-
-
LeMaster, D.M.1
Richards, F.M.2
-
29
-
-
0030592514
-
The crystal structure of hepatitis C virus NS3 proteinase reveals a trypsin-like fold and a structural zinc binding site
-
Love RA, et al. 1996. The crystal structure of hepatitis C virus NS3 proteinase reveals a trypsin-like fold and a structural zinc binding site. Cell 87:331-342.
-
(1996)
Cell
, vol.87
, pp. 331-342
-
-
Love, R.A.1
-
30
-
-
57149091105
-
Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein
-
Luo D, et al. 2008. Insights into RNA unwinding and ATP hydrolysis by the flavivirus NS3 protein. EMBO J. 27:3209 -3219.
-
(2008)
EMBO J
, vol.27
, pp. 3209-3219
-
-
Luo, D.1
-
31
-
-
0000021646
-
Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1
-
Meshi T, et al. 1988. Two concomitant base substitutions in the putative replicase genes of tobacco mosaic virus confer the ability to overcome the effects of a tomato resistance gene, Tm-1. EMBO J. 7:1575-1581.
-
(1988)
EMBO J
, vol.7
, pp. 1575-1581
-
-
Meshi, T.1
-
32
-
-
79954598438
-
A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 inmRNAexport
-
Montpetit B, et al. 2011. A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 inmRNAexport. Nature 472:238-242.
-
(2011)
Nature
, vol.472
, pp. 238-242
-
-
Montpetit, B.1
-
33
-
-
0347383760
-
ARP/wARP and automatic interpretation of protein electron density maps
-
Morris RJ, Perrakis A, Lamzin VS. 2003. ARP/wARP and automatic interpretation of protein electron density maps. Methods Enzymol. 374: 229-244.
-
(2003)
Methods Enzymol
, vol.374
, pp. 229-244
-
-
Morris, R.J.1
Perrakis, A.2
Lamzin, V.S.3
-
34
-
-
84855288767
-
A host small GTP-binding protein ARL8 plays crucial roles in Tobamovirus RNA replication
-
doi:10.1371/journal.ppat.1002409
-
Nishikiori M, et al. 2011. A host small GTP-binding protein ARL8 plays crucial roles in Tobamovirus RNA replication. PLoS Pathog. 7:e1002409. doi:10.1371/journal.ppat.1002409.
-
(2011)
PLoS Pathog
, vol.7
-
-
Nishikiori, M.1
-
35
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Macromol. Crystallogr. A 276:307-326.
-
(1997)
Macromol. Crystallogr. A
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
36
-
-
13444259748
-
Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development
-
Padmanabhan MS, Goregaoker SP, Golem S, Shiferaw H, Culver JN. 2005. Interaction of the tobacco mosaic virus replicase protein with the Aux/IAA protein PAP1/IAA26 is associated with disease development. J. Virol. 79:2549 -2558.
-
(2005)
J. Virol.
, vol.79
, pp. 2549-2558
-
-
Padmanabhan, M.S.1
Goregaoker, S.P.2
Golem, S.3
Shiferaw, H.4
Culver, J.N.5
-
37
-
-
39749169734
-
Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection
-
Padmanabhan MS, Kramer SR, Wang X, Culver JN. 2008. Tobacco mosaic virus replicase-auxin/indole acetic acid protein interactions: reprogramming the auxin response pathway to enhance virus infection. J. Virol. 82:2477-2485.
-
(2008)
J. Virol.
, vol.82
, pp. 2477-2485
-
-
Padmanabhan, M.S.1
Kramer, S.R.2
Wang, X.3
Culver, J.N.4
-
38
-
-
18844455755
-
Yeast genome-wide screen reveals dissimilar sets of host genes affecting replication of RNA viruses
-
Panavas T, Serviene E, Brasher J, Nagy PD. 2005. Yeast genome-wide screen reveals dissimilar sets of host genes affecting replication of RNA viruses. Proc. Natl. Acad. Sci. U. S. A. 102:7326 -7331.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 7326-7331
-
-
Panavas, T.1
Serviene, E.2
Brasher, J.3
Nagy, P.D.4
-
39
-
-
4644366388
-
HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs
-
Pape T, Schneider TR. 2004. HKL2MAP: a graphical user interface for macromolecular phasing with SHELX programs. J. Appl. Crystallogr. 37: 843-844.
-
(2004)
J. Appl. Crystallogr.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
40
-
-
66149148295
-
Mechanistic basis of 5=-3= translocation in SF1B helicases
-
Saikrishnan K, Powell B, Cook NJ, Webb MR, Wigley DB. 2009. Mechanistic basis of 5=-3= translocation in SF1B helicases. Cell 137:849-859.
-
(2009)
Cell
, vol.137
, pp. 849-859
-
-
Saikrishnan, K.1
Powell, B.2
Cook, N.J.3
Webb, M.R.4
Wigley, D.B.5
-
41
-
-
37549039510
-
A short history of SHELX
-
Sheldrick GM. 2008. A short history of SHELX. Acta Crystallogr. A 64: 112-122.
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
43
-
-
0032574840
-
A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo
-
Stagljar I, Korostensky C, Johnsson N, te Heesen S. 1998. A genetic system based on split-ubiquitin for the analysis of interactions between membrane proteins in vivo. Proc. Natl. Acad. Sci. U. S. A. 95:5187-5192.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 5187-5192
-
-
Stagljar, I.1
Korostensky, C.2
Johnsson, N.3
Te Heesen, S.4
-
44
-
-
34247548749
-
The double-resistance-breaking Tomato mosaic virus strain ToMV1-2 contains two independent single resistancebreaking domains
-
Strasser M, Pfitzner AJ. 2007. The double-resistance-breaking Tomato mosaic virus strain ToMV1-2 contains two independent single resistancebreaking domains. Arch. Virol. 152:903-914.
-
(2007)
Arch. Virol.
, vol.152
, pp. 903-914
-
-
Strasser, M.1
Pfitzner, A.J.2
-
45
-
-
0037439086
-
Arabidopsis TOBAMOVIRUS MULTIPLICATION (TOM) 2 locus encodes a transmembrane protein that interacts with TOM1
-
Tsujimoto Y, et al. 2003. Arabidopsis TOBAMOVIRUS MULTIPLICATION (TOM) 2 locus encodes a transmembrane protein that interacts with TOM1. EMBO J. 22:335-343.
-
(2003)
EMBO J
, vol.22
, pp. 335-343
-
-
Tsujimoto, Y.1
-
46
-
-
33745184517
-
Direct interaction between the tobacco mosaic virus helicase domain and the ATP-bound resistance protein, N factor during the hypersensitive response in tobacco plants
-
Ueda H, Yamaguchi Y, Sano H. 2006. Direct interaction between the tobacco mosaic virus helicase domain and the ATP-bound resistance protein, N factor during the hypersensitive response in tobacco plants. Plant Mol. Biol. 61:31- 45.
-
(2006)
Plant Mol. Biol.
, vol.61
, pp. 31-45
-
-
Ueda, H.1
Yamaguchi, Y.2
Sano, H.3
-
47
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar SS, Soultanas P, Dillingham MS, Subramanya HS, Wigley DB. 1999. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97:75- 84.
-
(1999)
Cell
, vol.97
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
48
-
-
77953025823
-
Helicase ATPase activity of the Tobacco mosaic virus 126-kDa protein modulates replicase complex assembly
-
Wang X, Kelman Z, Culver JN. 2010. Helicase ATPase activity of the Tobacco mosaic virus 126-kDa protein modulates replicase complex assembly. Virology 402:292-302.
-
(2010)
Virology
, vol.402
, pp. 292-302
-
-
Wang, X.1
Kelman, Z.2
Culver, J.N.3
-
49
-
-
80053633137
-
Expression, purification, and functional characterization of a stable helicase domain from a tomato mosaic virus replication protein
-
Xiang H, et al. 2012. Expression, purification, and functional characterization of a stable helicase domain from a tomato mosaic virus replication protein. Protein Expr. Purif. 81:89 -95.
-
(2012)
Protein Expr. Purif.
, vol.81
, pp. 89-95
-
-
Xiang, H.1
-
50
-
-
83055169767
-
Crystallization and preliminary X-ray crystallographic analysis of a helicase-likedomainfromatomatomosaicvirus replication protein
-
Xiang H, et al. 2011. Crystallization and preliminary X-ray crystallographic analysis of a helicase-likedomainfromatomatomosaicvirus replication protein.Acta Crystallogr. Sect. F. Struct. Biol. Cryst. Commun. 67:1649-1652.
-
(2011)
Acta Crystallogr. Sect. F. Struct. Biol. Cryst. Commun.
, vol.67
, pp. 1649-1652
-
-
Xiang, H.1
-
51
-
-
23244464646
-
Structure of the Dengue virus helicase/nucleoside triphosphatase catalytic domain at a resolution of 2.4 A
-
Xu T, et al. 2005. Structure of the Dengue virus helicase/nucleoside triphosphatase catalytic domain at a resolution of 2.4 A. J. Virol. 79: 10278-10288.
-
(2005)
J. Virol.
, vol.79
, pp. 10278-10288
-
-
Xu, T.1
-
52
-
-
0036171919
-
Complete inhibition of tobamovirus multiplication by simultaneous mutations in two homologous host genes
-
Yamanaka T, et al. 2002. Complete inhibition of tobamovirus multiplication by simultaneous mutations in two homologous host genes. J. Virol. 76:2491-2497.
-
(2002)
J. Virol.
, vol.76
, pp. 2491-2497
-
-
Yamanaka, T.1
-
53
-
-
0034730162
-
TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein
-
Yamanaka T, et al. 2000. TOM1, an Arabidopsis gene required for efficient multiplication of a tobamovirus, encodes a putative transmembrane protein. Proc. Natl. Acad. Sci. U. S. A. 97:10107-10112.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 10107-10112
-
-
Yamanaka, T.1
|