메뉴 건너뛰기




Volumn 27, Issue 4, 2013, Pages 400-412

Multiple roles for Piwi in silencing Drosophila transposons

Author keywords

Drosophila; Nascent; piRNA; Steady state; Transposon

Indexed keywords

MESSENGER RNA; PIWI PROTEIN; RNA;

EID: 84874240831     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.209767.112     Document Type: Article
Times cited : (206)

References (63)
  • 1
    • 36749037521 scopus 로고    scopus 로고
    • The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race
    • Aravin AA., Hannon GJ, Brennecke J. 2007. The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race. Science 318: 761-764.
    • (2007) Science , vol.318 , pp. 761-764
    • Aravin, A.A.1    Hannon, G.J.2    Brennecke, J.3
  • 4
    • 33947273235 scopus 로고    scopus 로고
    • Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila
    • Brennecke J., Aravin AA, Stark A, Dus M, KellisM, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103.
    • (2007) Cell , vol.128 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 7
    • 57849109058 scopus 로고    scopus 로고
    • Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
    • Core LJ., Waterfall JJ, Lis JT. 2008. Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters. Science 322: 1845-1848.
    • (2008) Science , vol.322 , pp. 1845-1848
    • Core, L.J.1    Waterfall, J.J.2    Lis, J.T.3
  • 9
    • 0032443562 scopus 로고    scopus 로고
    • A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal
    • Cox DN., Chao A, Baker J, Chang L, Qiao D, Lin H. 1998. A novel class of evolutionarily conserved genes defined by piwi are essential for stem cell self-renewal. Genes Dev 12: 3715-3727.
    • (1998) Genes Dev , vol.12 , pp. 3715-3727
    • Cox, D.N.1    Chao, A.2    Baker, J.3    Chang, L.4    Qiao, D.5    Lin, H.6
  • 10
    • 0033966406 scopus 로고    scopus 로고
    • Piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells
    • Cox DN., Chao A, Lin H. 2000. piwi encodes a nucleoplasmic factor whose activity modulates the number and division rate of germline stem cells. Development 127: 503-514.
    • (2000) Development , vol.127 , pp. 503-514
    • Cox, D.N.1    Chao, A.2    Lin, H.3
  • 11
    • 0037786824 scopus 로고    scopus 로고
    • COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster
    • Desset S., Meignin C, Dastugue B, Vaury C. 2003. COM, a heterochromatic locus governing the control of independent endogenous retroviruses from Drosophila melanogaster. Genetics 164: 501-509.
    • (2003) Genetics , vol.164 , pp. 501-509
    • Desset, S.1    Meignin, C.2    Dastugue, B.3    Vaury, C.4
  • 14
    • 56049115829 scopus 로고    scopus 로고
    • HP1 is distributed within distinct chromatin domains at Drosophila telomeres
    • Frydrychova RC., Mason JM, Archer TK. 2008. HP1 is distributed within distinct chromatin domains at Drosophila telomeres. Genetics 180: 121-131.
    • (2008) Genetics , vol.180 , pp. 121-131
    • Frydrychova, R.C.1    Mason, J.M.2    Archer, T.K.3
  • 15
    • 79251560849 scopus 로고    scopus 로고
    • Drosophila Piwi functions in Hsp90-mediated suppression of phenotypic variation
    • Gangaraju VK., Yin H, Weiner MM, Wang J, Huang XA, Lin H. 2011. Drosophila Piwi functions in Hsp90-mediated suppression of phenotypic variation. Nat Genet 43: 153-158.
    • (2011) Nat Genet , vol.43 , pp. 153-158
    • Gangaraju, V.K.1    Yin, H.2    Weiner, M.M.3    Wang, J.4    Huang, X.A.5    Lin, H.6
  • 16
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M., Zamore PD. 2009. Small silencing RNAs: An expanding universe. Nat Rev Genet 10: 94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 19
    • 84868613084 scopus 로고    scopus 로고
    • The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis
    • Ipsaro JJ., Haase AD, Knott SR, Joshua-Tor L, Hannon GJ. 2012. The structural biochemistry of Zucchini implicates it as a nuclease in piRNA biogenesis. Nature 491: 279-283.
    • (2012) Nature , vol.491 , pp. 279-283
    • Ipsaro, J.J.1    Haase, A.D.2    Knott, S.R.3    Joshua-Tor, L.4    Hannon, G.J.5
  • 20
    • 84868589615 scopus 로고    scopus 로고
    • Biology of PIWI-interacting RNAs: New insights into biogenesis and function inside and outside of germlines
    • Ishizu H., Siomi H, Siomi MC. 2012. Biology of PIWI-interacting RNAs: New insights into biogenesis and function inside and outside of germlines. Genes Dev 26: 2361-2373.
    • (2012) Genes Dev , vol.26 , pp. 2361-2373
    • Ishizu, H.1    Siomi, H.2    Siomi, M.C.3
  • 21
    • 34848858935 scopus 로고    scopus 로고
    • Telomeric trans-silencing: An epigenetic repression combining RNA silencing and heterochromatin formation
    • Josse T., Teysset L, Todeschini AL, Sidor CM, Anxolabehere D, Ronsseray S. 2007. Telomeric trans-silencing: An epigenetic repression combining RNA silencing and heterochromatin formation. PLoS Genet 3: 1633-1643.
    • (2007) PLoS Genet , vol.3 , pp. 1633-1643
    • Josse, T.1    Teysset, L.2    Todeschini, A.L.3    Sidor, C.M.4    Anxolabehere, D.5    Ronsseray, S.6
  • 22
    • 17144417381 scopus 로고    scopus 로고
    • Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline
    • Kalmykova AI., Klenov MS, Gvozdev VA. 2005. Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline. Nucleic Acids Res 33: 2052-2059.
    • (2005) Nucleic Acids Res , vol.33 , pp. 2052-2059
    • Kalmykova, A.I.1    Klenov, M.S.2    Gvozdev, V.A.3
  • 23
    • 80052991624 scopus 로고    scopus 로고
    • 39 End formation of PIWI-interacting RNAs in vitro
    • Kawaoka S., Izumi N, Katsuma S, Tomari Y. 2011. 39 End formation of PIWI-interacting RNAs in vitro. Mol Cell 43: 1015-1022.
    • (2011) Mol Cell , vol.43 , pp. 1015-1022
    • Kawaoka, S.1    Izumi, N.2    Katsuma, S.3    Tomari, Y.4
  • 25
    • 0017706803 scopus 로고
    • Hybrid dysgenesis in Drosophila melanogaster: A syndrome of aberrant traits including mutation, sterility and male recombination
    • Kidwell MG., Kidwell JF, Sved JA. 1977. Hybrid dysgenesis in Drosophila melanogaster: A syndrome of aberrant traits including mutation, sterility and male recombination. Genetics 86: 813-833.
    • (1977) Genetics , vol.86 , pp. 813-833
    • Kidwell, M.G.1    Kidwell, J.F.2    Sved, J.A.3
  • 30
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B., Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 31
    • 80051997952 scopus 로고    scopus 로고
    • Dynamic interactions between transposable elements and their hosts
    • Levin HL., Moran JV. 2011. Dynamic interactions between transposable elements and their hosts. Nat Rev Genet 12: 615-627.
    • (2011) Nat Rev Genet , vol.12 , pp. 615-627
    • Levin, H.L.1    Moran, J.V.2
  • 33
    • 60149098474 scopus 로고    scopus 로고
    • Small RNAs as guardians of the genome
    • Malone CD., Hannon GJ. 2009. Small RNAs as guardians of the genome. Cell 136: 656-668.
    • (2009) Cell , vol.136 , pp. 656-668
    • Malone, C.D.1    Hannon, G.J.2
  • 35
    • 34249011855 scopus 로고    scopus 로고
    • The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis
    • Mevel-Ninio M, Pelisson A, Kinder J, Campos AR, Bucheton A. 2007. The flamenco locus controls the gypsy and ZAM retroviruses and is required for Drosophila oogenesis. Genetics 175: 1615-1624.
    • (2007) Genetics , vol.175 , pp. 1615-1624
    • Mevel-Ninio, M.1    Pelisson, A.2    Kinder, J.3    Campos, A.R.4    Bucheton, A.5
  • 36
    • 77950387204 scopus 로고    scopus 로고
    • HP1 recruitment in the absence of argonaute proteins in Drosophila
    • Moshkovich N., Lei EP. 2010. HP1 recruitment in the absence of argonaute proteins in Drosophila. PLoS Genet 6: e1000880.
    • (2010) PLoS Genet , vol.6
    • Moshkovich, N.1    Lei, E.P.2
  • 38
    • 77957793321 scopus 로고    scopus 로고
    • An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila
    • Olivieri D., SykoraMM, Sachidanandam R, Mechtler K, Brennecke J. 2010. An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila. EMBO J 29: 3301-3317.
    • (2010) EMBO J , vol.29 , pp. 3301-3317
    • Olivieri, D.1    Sykora, M.M.2    Sachidanandam, R.3    Mechtler, K.4    Brennecke, J.5
  • 39
    • 0028110848 scopus 로고
    • Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene
    • Pelisson A., Song SU, Prud'homme N, Smith PA, Bucheton A, Corces VG. 1994. Gypsy transposition correlates with the production of a retroviral envelope-like protein under the tissue-specific control of the Drosophila flamenco gene. EMBO J 13: 4401-4411.
    • (1994) EMBO J , vol.13 , pp. 4401-4411
    • Pelisson, A.1    Song, S.U.2    Prud'homme, N.3    Smith, P.A.4    Bucheton, A.5    Corces, V.G.6
  • 40
    • 0031455214 scopus 로고    scopus 로고
    • About the origin of retroviruses and the co-evolution of the gypsy retrovirus with the Drosophila flamenco host gene
    • Pelisson A., Teysset L, Chalvet F, Kim A, Prud'homme N, Terzian C., Bucheton A. 1997. About the origin of retroviruses and the co-evolution of the gypsy retrovirus with the Drosophila flamenco host gene. Genetica 100: 29-37.
    • (1997) Genetica , vol.100 , pp. 29-37
    • Pelisson, A.1    Teysset, L.2    Chalvet, F.3    Kim, A.4    Prud'homme, N.5    Terzian, C.6    Bucheton, A.7
  • 41
    • 33846810192 scopus 로고    scopus 로고
    • A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary
    • Pelisson A., Sarot E, Payen-Groschêne G, Bucheton A. 2007. A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary. J Virol 81: 1951-1960.
    • (2007) J Virol , vol.81 , pp. 1951-1960
    • Pelisson, A.1    Sarot, E.2    Payen-Groschêne, G.3    Bucheton, A.4
  • 43
    • 84864042164 scopus 로고    scopus 로고
    • Shutdown is a component of the Drosophila piRNA biogenesis machinery
    • Preall JB., Czech B, Guzzardo PM, Muerdter F, Hannon GJ. 2012. shutdown is a component of the Drosophila piRNA biogenesis machinery. RNA 18: 1446-1457.
    • (2012) RNA , vol.18 , pp. 1446-1457
    • Preall, J.B.1    Czech, B.2    Guzzardo, P.M.3    Muerdter, F.4    Hannon, G.J.5
  • 44
    • 0028795178 scopus 로고
    • Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster
    • Prud'homme N, Gans M, Masson M, Terzian C, Bucheton A. 1995. Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster. Genetics 139: 697-711.
    • (1995) Genetics , vol.139 , pp. 697-711
    • Prud'homme, N.1    Gans, M.2    Masson, M.3    Terzian, C.4    Bucheton, A.5
  • 45
    • 84455200582 scopus 로고    scopus 로고
    • Combinatorial patterning of chromatin regulators uncovered by genomewide location analysis in human cells
    • Ram O., Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, et al. 2011. Combinatorial patterning of chromatin regulators uncovered by genomewide location analysis in human cells. Cell 147: 1628-1639.
    • (2011) Cell , vol.147 , pp. 1628-1639
    • Ram, O.1    Goren, A.2    Amit, I.3    Shoresh, N.4    Yosef, N.5    Ernst, J.6    Kellis, M.7    Gymrek, M.8    Issner, R.9    Coyne, M.10
  • 47
    • 0031903847 scopus 로고    scopus 로고
    • Repression of hybrid dysgenesis in Drosophila melanogaster by combinations of telomeric P-element reporters and naturally occurring P elements
    • Ronsseray S., Marin L, Lehmann M, Anxolabehere D. 1998. Repression of hybrid dysgenesis in Drosophila melanogaster by combinations of telomeric P-element reporters and naturally occurring P elements. Genetics 149: 1857-1866.
    • (1998) Genetics , vol.149 , pp. 1857-1866
    • Ronsseray, S.1    Marin, L.2    Lehmann, M.3    Anxolabehere, D.4
  • 49
    • 33747369856 scopus 로고    scopus 로고
    • Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome
    • Saito K., Nishida KM, Mori T, Kawamura Y, Miyoshi K, Nagami T, Siomi H, Siomi MC. 2006. Specific association of Piwi with rasiRNAs derived from retrotransposon and heterochromatic regions in the Drosophila genome. Genes Dev 20: 2214-2222.
    • (2006) Genes Dev , vol.20 , pp. 2214-2222
    • Saito, K.1    Nishida, K.M.2    Mori, T.3    Kawamura, Y.4    Miyoshi, K.5    Nagami, T.6    Siomi, H.7    Siomi, M.C.8
  • 52
    • 0036236976 scopus 로고    scopus 로고
    • Heterochromatin protein 1 is involved in control of telomere elongation in Drosophila melanogaster
    • Savitsky M., Kravchuk O, Melnikova L, Georgiev P. 2002. Heterochromatin protein 1 is involved in control of telomere elongation in Drosophila melanogaster. Mol Cell Biol 22: 3204-3218.
    • (2002) Mol Cell Biol , vol.22 , pp. 3204-3218
    • Savitsky, M.1    Kravchuk, O.2    Melnikova, L.3    Georgiev, P.4
  • 53
    • 32044437792 scopus 로고    scopus 로고
    • Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline
    • Savitsky M., Kwon D, Georgiev P, Kalmykova A, Gvozdev V. 2006. Telomere elongation is under the control of the RNAi-based mechanism in the Drosophila germline. Genes Dev 20: 345-354.
    • (2006) Genes Dev , vol.20 , pp. 345-354
    • Savitsky, M.1    Kwon, D.2    Georgiev, P.3    Kalmykova, A.4    Gvozdev, V.5
  • 54
    • 78049341213 scopus 로고    scopus 로고
    • Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation
    • Schaefer M., Lyko F. 2010. Lack of evidence for DNA methylation of Invader4 retroelements in Drosophila and implications for Dnmt2-mediated epigenetic regulation. Nat Genet 42: 920-921.
    • (2010) Nat Genet , vol.42 , pp. 920-921
    • Schaefer, M.1    Lyko, F.2
  • 56
    • 84870060785 scopus 로고    scopus 로고
    • Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression
    • Sienski G., Donertas D, Brennecke J. 2012. Transcriptional silencing of transposons by piwi and maelstrom and its impact on chromatin state and gene expression. Cell 151: 964-980.
    • (2012) Cell , vol.151 , pp. 964-980
    • Sienski, G.1    Donertas, D.2    Brennecke, J.3
  • 57
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • Slotkin RK., Martienssen R. 2007. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8: 272-285.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 59
    • 84869825301 scopus 로고    scopus 로고
    • Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc
    • Voigt F., Reuter M, Kasaruho A, Schulz EC, Pillai RS, Barabas O. 2012. Crystal structure of the primary piRNA biogenesis factor Zucchini reveals similarity to the bacterial PLD endonuclease Nuc. RNA 18: 2128-2134.
    • (2012) RNA , vol.18 , pp. 2128-2134
    • Voigt, F.1    Reuter, M.2    Kasaruho, A.3    Schulz, E.C.4    Pillai, R.S.5    Barabas, O.6
  • 60
    • 84862907807 scopus 로고    scopus 로고
    • Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line
    • Wang SH., Elgin SC. 2011. Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line. Proc Natl Acad Sci 108: 21164-21169.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 21164-21169
    • Wang, S.H.1    Elgin, S.C.2
  • 61
    • 36048937264 scopus 로고    scopus 로고
    • An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster
    • Yin H., Lin H. 2007. An epigenetic activation role of Piwi and a Piwi-associated piRNA in Drosophila melanogaster. Nature 450: 304-308.
    • (2007) Nature , vol.450 , pp. 304-308
    • Yin, H.1    Lin, H.2
  • 62
    • 67650711619 scopus 로고    scopus 로고
    • A clustering approach for identification of enriched domains from histone modification ChIP-seq data
    • Zang C., Schones DE, Zeng C, Cui K, Zhao K, Peng W. 2009. A clustering approach for identification of enriched domains from histone modification ChIP-seq data. Bioinformatics 25: 1952-1958.
    • (2009) Bioinformatics , vol.25 , pp. 1952-1958
    • Zang, C.1    Schones, D.E.2    Zeng, C.3    Cui, K.4    Zhao, K.5    Peng, W.6
  • 63
    • 77952355762 scopus 로고    scopus 로고
    • Genomewide evolutionary analysis of eukaryotic DNA methylation
    • Zemach A., McDaniel IE, Silva P, Zilberman D. 2010. Genomewide evolutionary analysis of eukaryotic DNA methylation. Science 328: 916-919.
    • (2010) Science , vol.328 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.