-
1
-
-
77957111493
-
Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs
-
Ferré-D'Amaré A.R. Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs. Methods 2010, 52:159-167.
-
(2010)
Methods
, vol.52
, pp. 159-167
-
-
Ferré-D'Amaré, A.R.1
-
2
-
-
78650986853
-
A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination
-
Koldobskaya Y., Duguid E.M., Shechner D.M., Suslov N.B., Ye J., Sidhu S.S., Bartel D.P., Koide S., Kossiakoff A.A., Piccirilli J.A. A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination. Nat Struct Mol Biol 2011, 18:100-106.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 100-106
-
-
Koldobskaya, Y.1
Duguid, E.M.2
Shechner, D.M.3
Suslov, N.B.4
Ye, J.5
Sidhu, S.S.6
Bartel, D.P.7
Koide, S.8
Kossiakoff, A.A.9
Piccirilli, J.A.10
-
3
-
-
0025129937
-
Structure of ribonuclease H phased at 2Å resolution by MAD analysis of the selenomethionyl protein
-
Yang W., Hendrickson W.A., Crouch R.J., Satow Y. Structure of ribonuclease H phased at 2Å resolution by MAD analysis of the selenomethionyl protein. Science 1990, 249:1398-1405.
-
(1990)
Science
, vol.249
, pp. 1398-1405
-
-
Yang, W.1
Hendrickson, W.A.2
Crouch, R.J.3
Satow, Y.4
-
4
-
-
0034695419
-
Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module
-
Ferré-D'Amaré A.R., Doudna J.A. Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module. J Mol Biol 2000, 295:541-556.
-
(2000)
J Mol Biol
, vol.295
, pp. 541-556
-
-
Ferré-D'Amaré, A.R.1
Doudna, J.A.2
-
5
-
-
38349100453
-
Synthetic antibodies for specific recognition and crystallization of structured RNA
-
Ye J.D., Tereshko V., Frederiksen J.K., Koide A., Fellouse F.A., Sidhu S.S., Koide S., Kossiakoff A.A., Piccirilli J.A. Synthetic antibodies for specific recognition and crystallization of structured RNA. Proc Natl Acad Sci USA 2008, 105:82-87.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 82-87
-
-
Ye, J.D.1
Tereshko, V.2
Frederiksen, J.K.3
Koide, A.4
Fellouse, F.A.5
Sidhu, S.S.6
Koide, S.7
Kossiakoff, A.A.8
Piccirilli, J.A.9
-
6
-
-
84881665997
-
Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA
-
Zhang J., Ferré-D'Amaré A.R. Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA. Nature 2013, 500:363-366.
-
(2013)
Nature
, vol.500
, pp. 363-366
-
-
Zhang, J.1
Ferré-D'Amaré, A.R.2
-
8
-
-
84877739247
-
Structural studies of RNase P
-
Mondragón A. Structural studies of RNase P. Annu Rev Biophys 2013, 42:537-557.
-
(2013)
Annu Rev Biophys
, vol.42
, pp. 537-557
-
-
Mondragón, A.1
-
9
-
-
0032528951
-
The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence
-
Lee A.J., Crothers D.M. The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence. Structure 1998, 6:993-1005.
-
(1998)
Structure
, vol.6
, pp. 993-1005
-
-
Lee, A.J.1
Crothers, D.M.2
-
10
-
-
63649099704
-
Crystal structure of human spliceosomal U1 snRNP at 5.5Å resolution
-
Pomeranz Krummel D.A., Oubridge C., Leung A.K., Li J., Nagai K. Crystal structure of human spliceosomal U1 snRNP at 5.5Å resolution. Nature 2009, 458:475-480.
-
(2009)
Nature
, vol.458
, pp. 475-480
-
-
Pomeranz Krummel, D.A.1
Oubridge, C.2
Leung, A.K.3
Li, J.4
Nagai, K.5
-
11
-
-
0030781084
-
Use of chemically modified nucleotides to determine a 62-nucleotide RNA crystal structure: a survey of phosphorothioates, Br, Pt and Hg
-
Correll C.C., Freeborn B., Moore P.B., Steitz T.A. Use of chemically modified nucleotides to determine a 62-nucleotide RNA crystal structure: a survey of phosphorothioates, Br, Pt and Hg. J Biomol Struct Dyn 1997, 15:165-172.
-
(1997)
J Biomol Struct Dyn
, vol.15
, pp. 165-172
-
-
Correll, C.C.1
Freeborn, B.2
Moore, P.B.3
Steitz, T.A.4
-
12
-
-
0036237981
-
Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation
-
Kieft J.S., Zhou K., Grech A., Jubin R., Doudna J.A. Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation. Nat Struct Biol 2002, 9:370-374.
-
(2002)
Nat Struct Biol
, vol.9
, pp. 370-374
-
-
Kieft, J.S.1
Zhou, K.2
Grech, A.3
Jubin, R.4
Doudna, J.A.5
-
13
-
-
84934439212
-
Se-derivatized RNAs for X-ray crystallography
-
Lin L., Huang Z. Se-derivatized RNAs for X-ray crystallography. Methods Mol Biol 2012, 941:213-225.
-
(2012)
Methods Mol Biol
, vol.941
, pp. 213-225
-
-
Lin, L.1
Huang, Z.2
-
14
-
-
84890400820
-
Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom
-
Sheng J., Gan J., Soars A.S., Salon J., Huang Z. Structural insights of non-canonical U*U pair and Hoogsteen interaction probed with Se atom. Nucleic Acids Res 2013, 41:10476-10487.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 10476-10487
-
-
Sheng, J.1
Gan, J.2
Soars, A.S.3
Salon, J.4
Huang, Z.5
-
15
-
-
62549095901
-
A fast selenium derivatization strategy for crystallization and phasing of RNA structures
-
Olieric V., Rieder U., Lang K., Serganov A., Schulze-Briese C., Micura R., Dumas P., Ennifar E. A fast selenium derivatization strategy for crystallization and phasing of RNA structures. RNA 2009, 15:707-715.
-
(2009)
RNA
, vol.15
, pp. 707-715
-
-
Olieric, V.1
Rieder, U.2
Lang, K.3
Serganov, A.4
Schulze-Briese, C.5
Micura, R.6
Dumas, P.7
Ennifar, E.8
-
16
-
-
34447260753
-
A general strategy to solve the phase problem in RNA crystallography
-
Keel A.Y., Rambo R.P., Batey R.T., Kieft J.S. A general strategy to solve the phase problem in RNA crystallography. Structure 2007, 15:761-772.
-
(2007)
Structure
, vol.15
, pp. 761-772
-
-
Keel, A.Y.1
Rambo, R.P.2
Batey, R.T.3
Kieft, J.S.4
-
17
-
-
0017182937
-
Structural domains of transfer RNA molecules
-
Quigley G.J., Rich A. Structural domains of transfer RNA molecules. Science 1976, 194:796-806.
-
(1976)
Science
, vol.194
, pp. 796-806
-
-
Quigley, G.J.1
Rich, A.2
-
18
-
-
0016354122
-
Structure of yeast phenylalanine tRNA at 3Å resolution
-
Robertus J.D., Ladner J.E., Finch J.T., Rhodes D., Brown R.S., Clark B.F., Klug A. Structure of yeast phenylalanine tRNA at 3Å resolution. Nature 1974, 250:546-551.
-
(1974)
Nature
, vol.250
, pp. 546-551
-
-
Robertus, J.D.1
Ladner, J.E.2
Finch, J.T.3
Rhodes, D.4
Brown, R.S.5
Clark, B.F.6
Klug, A.7
-
19
-
-
33748582906
-
Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements
-
Korostelev A., Trakhanov S., Laurberg M., Noller H.F. Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements. Cell 2006, 126:1065-1077.
-
(2006)
Cell
, vol.126
, pp. 1065-1077
-
-
Korostelev, A.1
Trakhanov, S.2
Laurberg, M.3
Noller, H.F.4
-
20
-
-
33749354360
-
Structure of the 70S ribosome complexed with mRNA and tRNA
-
Selmer M., Dunham C.M., Murphy F.V., Weixlbaumer A., Petry S., Kelley A.C., Weir J.R., Ramakrishnan V. Structure of the 70S ribosome complexed with mRNA and tRNA. Science 2006, 313:1935-1942.
-
(2006)
Science
, vol.313
, pp. 1935-1942
-
-
Selmer, M.1
Dunham, C.M.2
Murphy, F.V.3
Weixlbaumer, A.4
Petry, S.5
Kelley, A.C.6
Weir, J.R.7
Ramakrishnan, V.8
-
21
-
-
84861405805
-
Metabolite recognition principles and molecular mechanisms underlying riboswitch function
-
Serganov A., Patel D.J. Metabolite recognition principles and molecular mechanisms underlying riboswitch function. Annu Rev Biophys 2012, 41:343-370.
-
(2012)
Annu Rev Biophys
, vol.41
, pp. 343-370
-
-
Serganov, A.1
Patel, D.J.2
-
22
-
-
78650175123
-
Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA
-
Reiter N.J., Osterman A., Torres-Larios A., Swinger K.K., Pan T., Mondragón A. Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA. Nature 2010, 468:784-789.
-
(2010)
Nature
, vol.468
, pp. 784-789
-
-
Reiter, N.J.1
Osterman, A.2
Torres-Larios, A.3
Swinger, K.K.4
Pan, T.5
Mondragón, A.6
-
23
-
-
0016146021
-
Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
-
Kim S.H., Suddath F.L., Quigley G.J., McPherson A., Sussman J.L., Wang A.H., Seeman N.C., Rich A. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA. Science 1974, 185:435-440.
-
(1974)
Science
, vol.185
, pp. 435-440
-
-
Kim, S.H.1
Suddath, F.L.2
Quigley, G.J.3
McPherson, A.4
Sussman, J.L.5
Wang, A.H.6
Seeman, N.C.7
Rich, A.8
-
24
-
-
0019123185
-
Crystal structure of yeast tRNAAsp
-
Moras D., Comarmond M.B., Fischer J., Weiss R., Thierry J.C., Ebel J.P., Giege R. Crystal structure of yeast tRNAAsp. Nature 1980, 288:669-674.
-
(1980)
Nature
, vol.288
, pp. 669-674
-
-
Moras, D.1
Comarmond, M.B.2
Fischer, J.3
Weiss, R.4
Thierry, J.C.5
Ebel, J.P.6
Giege, R.7
-
25
-
-
84859420147
-
Structure of transfer RNAs: similarity and variability
-
Giege R., Juhling F., Putz J., Stadler P., Sauter C., Florentz C. Structure of transfer RNAs: similarity and variability. Wiley Interdiscip Rev RNA 2012, 3:37-61.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 37-61
-
-
Giege, R.1
Juhling, F.2
Putz, J.3
Stadler, P.4
Sauter, C.5
Florentz, C.6
-
27
-
-
0025815046
-
The 3Å crystal structure of yeast initiator tRNA: functional implications in initiator/elongator discrimination
-
Basavappa R., Sigler P.B. The 3Å crystal structure of yeast initiator tRNA: functional implications in initiator/elongator discrimination. EMBO J 1991, 10:3105-3111.
-
(1991)
EMBO J
, vol.10
, pp. 3105-3111
-
-
Basavappa, R.1
Sigler, P.B.2
-
28
-
-
0027234192
-
TRNA as a positive regulator of transcription antitermination in B. subtilis
-
Grundy F.J., Henkin T.M. tRNA as a positive regulator of transcription antitermination in B. subtilis. Cell 1993, 74:475-482.
-
(1993)
Cell
, vol.74
, pp. 475-482
-
-
Grundy, F.J.1
Henkin, T.M.2
-
29
-
-
34547659860
-
Recombinant RNA technology: the tRNA scaffold
-
Ponchon L., Dardel F. Recombinant RNA technology: the tRNA scaffold. Nat Methods 2007, 4:571-576.
-
(2007)
Nat Methods
, vol.4
, pp. 571-576
-
-
Ponchon, L.1
Dardel, F.2
-
30
-
-
0028921811
-
Frequent use of the same tertiary motif by self-folding RNAs
-
Costa M., Michel F. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J 1995, 14:1276-1285.
-
(1995)
EMBO J
, vol.14
, pp. 1276-1285
-
-
Costa, M.1
Michel, F.2
-
31
-
-
0030959348
-
Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution
-
Costa M., Michel F. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution. EMBO J 1997, 16:3289-3302.
-
(1997)
EMBO J
, vol.16
, pp. 3289-3302
-
-
Costa, M.1
Michel, F.2
-
32
-
-
0033605081
-
Pathway modulation, circular permutation and rapid RNA folding under kinetic control
-
Pan T., Fang X., Sosnick T. Pathway modulation, circular permutation and rapid RNA folding under kinetic control. J Mol Biol 1999, 286:721-731.
-
(1999)
J Mol Biol
, vol.286
, pp. 721-731
-
-
Pan, T.1
Fang, X.2
Sosnick, T.3
-
33
-
-
0026315514
-
Folding of circularly permuted transfer RNAs
-
Pan T., Gutell R.R., Uhlenbeck O.C. Folding of circularly permuted transfer RNAs. Science 1991, 254:1361-1364.
-
(1991)
Science
, vol.254
, pp. 1361-1364
-
-
Pan, T.1
Gutell, R.R.2
Uhlenbeck, O.C.3
-
34
-
-
53649104514
-
Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch
-
Xiao H., Edwards T.E., Ferré-D'Amaré A.R. Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch. Chem Biol 2008, 15:1125-1137.
-
(2008)
Chem Biol
, vol.15
, pp. 1125-1137
-
-
Xiao, H.1
Edwards, T.E.2
Ferré-D'Amaré, A.R.3
-
35
-
-
18844412633
-
Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA
-
Yousef M.R., Grundy F.J., Henkin T.M. Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA. J Mol Biol 2005, 349:273-287.
-
(2005)
J Mol Biol
, vol.349
, pp. 273-287
-
-
Yousef, M.R.1
Grundy, F.J.2
Henkin, T.M.3
-
36
-
-
0032497521
-
Crystal structure of a hepatitis delta virus ribozyme
-
Ferré-D'Amaré A.R., Zhou K., Doudna J.A. Crystal structure of a hepatitis delta virus ribozyme. Nature 1998, 395:567-574.
-
(1998)
Nature
, vol.395
, pp. 567-574
-
-
Ferré-D'Amaré, A.R.1
Zhou, K.2
Doudna, J.A.3
-
37
-
-
3042848954
-
Crystal structure of a self-splicing group I intron with both exons
-
Adams P.L., Stahley M.R., Kosek A.B., Wang J., Strobel S.A. Crystal structure of a self-splicing group I intron with both exons. Nature 2004, 430:45-50.
-
(2004)
Nature
, vol.430
, pp. 45-50
-
-
Adams, P.L.1
Stahley, M.R.2
Kosek, A.B.3
Wang, J.4
Strobel, S.A.5
-
38
-
-
47549110353
-
Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme
-
Xiao H., Murakami H., Suga H., Ferré-D'Amaré A.R. Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature 2008, 454:358-361.
-
(2008)
Nature
, vol.454
, pp. 358-361
-
-
Xiao, H.1
Murakami, H.2
Suga, H.3
Ferré-D'Amaré, A.R.4
-
39
-
-
71449123530
-
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch
-
Kulshina N., Baird N.J., Ferré-D'Amaré A.R. Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nat Struct Mol Biol 2009, 16:1212-1217.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1212-1217
-
-
Kulshina, N.1
Baird, N.J.2
Ferré-D'Amaré, A.R.3
-
40
-
-
71449108155
-
Structural basis of ligand binding by a c-di-GMP riboswitch
-
Smith K.D., Lipchock S.V., Ames T.D., Wang J., Breaker R.R., Strobel S.A. Structural basis of ligand binding by a c-di-GMP riboswitch. Nat Struct Mol Biol 2009, 16:1218-1223.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1218-1223
-
-
Smith, K.D.1
Lipchock, S.V.2
Ames, T.D.3
Wang, J.4
Breaker, R.R.5
Strobel, S.A.6
-
41
-
-
70849121359
-
Crystal structure of the catalytic core of an RNA-polymerase ribozyme
-
Shechner D.M., Grant R.A., Bagby S.C., Koldobskaya Y., Piccirilli J.A., Bartel D.P. Crystal structure of the catalytic core of an RNA-polymerase ribozyme. Science 2009, 326:1271-1275.
-
(2009)
Science
, vol.326
, pp. 1271-1275
-
-
Shechner, D.M.1
Grant, R.A.2
Bagby, S.C.3
Koldobskaya, Y.4
Piccirilli, J.A.5
Bartel, D.P.6
-
42
-
-
33846279049
-
Structural investigation of the GlmS ribozyme bound to its catalytic cofactor
-
Cochrane J.C., Lipchock S.V., Strobel S.A. Structural investigation of the GlmS ribozyme bound to its catalytic cofactor. Chem Biol 2007, 14:97-105.
-
(2007)
Chem Biol
, vol.14
, pp. 97-105
-
-
Cochrane, J.C.1
Lipchock, S.V.2
Strobel, S.A.3
-
43
-
-
34548591567
-
Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme
-
Klein D.J., Wilkinson S.R., Been M.D., Ferré-D'Amaré A.R. Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme. J Mol Biol 2007, 373:178-189.
-
(2007)
J Mol Biol
, vol.373
, pp. 178-189
-
-
Klein, D.J.1
Wilkinson, S.R.2
Been, M.D.3
Ferré-D'Amaré, A.R.4
-
44
-
-
33748325570
-
Structural basis of glmS ribozyme activation by glucosamine-6-phosphate
-
Klein D.J., Ferré-D'Amaré A.R. Structural basis of glmS ribozyme activation by glucosamine-6-phosphate. Science 2006, 313:1752-1756.
-
(2006)
Science
, vol.313
, pp. 1752-1756
-
-
Klein, D.J.1
Ferré-D'Amaré, A.R.2
-
45
-
-
84255189090
-
The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks
-
Butcher S.E., Pyle A.M. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks. Acc Chem Res 2011, 44:1302-1311.
-
(2011)
Acc Chem Res
, vol.44
, pp. 1302-1311
-
-
Butcher, S.E.1
Pyle, A.M.2
-
46
-
-
17844366343
-
Recurrent structural RNA motifs, isostericity matrices and sequence alignments
-
Lescoute A., Leontis N.B., Massire C., Westhof E. Recurrent structural RNA motifs, isostericity matrices and sequence alignments. Nucleic Acids Res 2005, 33:2395-2409.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2395-2409
-
-
Lescoute, A.1
Leontis, N.B.2
Massire, C.3
Westhof, E.4
-
47
-
-
0035423087
-
The kink-turn: a new RNA secondary structure motif
-
Klein D.J., Schmeing T.M., Moore P.B., Steitz T.A. The kink-turn: a new RNA secondary structure motif. EMBO J 2001, 20:4214-4221.
-
(2001)
EMBO J
, vol.20
, pp. 4214-4221
-
-
Klein, D.J.1
Schmeing, T.M.2
Moore, P.B.3
Steitz, T.A.4
-
48
-
-
0034897731
-
The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs
-
Winkler W.C., Grundy F.J., Murphy B.A., Henkin T.M. The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs. RNA 2001, 7:1165-1172.
-
(2001)
RNA
, vol.7
, pp. 1165-1172
-
-
Winkler, W.C.1
Grundy, F.J.2
Murphy, B.A.3
Henkin, T.M.4
-
49
-
-
84867612046
-
The structure and folding of kink turns in RNA
-
Lilley D.M. The structure and folding of kink turns in RNA. Wiley Interdiscip Rev RNA 2012, 3:797-805.
-
(2012)
Wiley Interdiscip Rev RNA
, vol.3
, pp. 797-805
-
-
Lilley, D.M.1
-
50
-
-
74049154427
-
The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification
-
Hamma T., Ferré-D'Amaré A.R. The box H/ACA ribonucleoprotein complex: interplay of RNA and protein structures in post-transcriptional RNA modification. J Biol Chem 2010, 285:805-809.
-
(2010)
J Biol Chem
, vol.285
, pp. 805-809
-
-
Hamma, T.1
Ferré-D'Amaré, A.R.2
-
51
-
-
84872517135
-
Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches
-
Baird N.J., Ferré-D'Amaré A.R. Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches. RNA 2013, 19:167-176.
-
(2013)
RNA
, vol.19
, pp. 167-176
-
-
Baird, N.J.1
Ferré-D'Amaré, A.R.2
-
52
-
-
2342638215
-
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8Å resolution
-
Hamma T., Ferré-D'Amaré A.R. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8Å resolution. Structure 2004, 12:893-903.
-
(2004)
Structure
, vol.12
, pp. 893-903
-
-
Hamma, T.1
Ferré-D'Amaré, A.R.2
-
53
-
-
47049124440
-
The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA
-
Turner B., Lilley D.M. The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA. J Mol Biol 2008, 381:431-442.
-
(2008)
J Mol Biol
, vol.381
, pp. 431-442
-
-
Turner, B.1
Lilley, D.M.2
-
54
-
-
84863338217
-
YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops
-
Baird N.J., Zhang J., Hamma T., Ferré-D'Amaré A.R. YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. RNA 2012, 18:759-770.
-
(2012)
RNA
, vol.18
, pp. 759-770
-
-
Baird, N.J.1
Zhang, J.2
Hamma, T.3
Ferré-D'Amaré, A.R.4
-
55
-
-
9344236009
-
RNA kink turns to the left and to the right
-
Strobel S.A., Adams P.L., Stahley M.R., Wang J. RNA kink turns to the left and to the right. RNA 2004, 10:1852-1854.
-
(2004)
RNA
, vol.10
, pp. 1852-1854
-
-
Strobel, S.A.1
Adams, P.L.2
Stahley, M.R.3
Wang, J.4
-
56
-
-
17844375121
-
Hinge-like motions in RNA kink-turns: the role of the second A-minor motif and nominally unpaired bases
-
Razga F., Koca J., Sponer J., Leontis N.B. Hinge-like motions in RNA kink-turns: the role of the second A-minor motif and nominally unpaired bases. Biophys J 2005, 88:3466-3485.
-
(2005)
Biophys J
, vol.88
, pp. 3466-3485
-
-
Razga, F.1
Koca, J.2
Sponer, J.3
Leontis, N.B.4
-
57
-
-
84874305186
-
The plasticity of a structural motif in RNA: structural polymorphism of a kink turn as a function of its environment
-
Daldrop P., Lilley D.M. The plasticity of a structural motif in RNA: structural polymorphism of a kink turn as a function of its environment. RNA 2013, 19:357-364.
-
(2013)
RNA
, vol.19
, pp. 357-364
-
-
Daldrop, P.1
Lilley, D.M.2
-
58
-
-
33745628336
-
Structure of the S-denosylmethionine riboswitch regulatory mRNA element
-
Montange R.K., Batey R.T. Structure of the S-denosylmethionine riboswitch regulatory mRNA element. Nature 2006, 441:1172-1175.
-
(2006)
Nature
, vol.441
, pp. 1172-1175
-
-
Montange, R.K.1
Batey, R.T.2
-
59
-
-
84861387352
-
Structure and folding of a rare, natural kink turn in RNA with an A*A pair at the 2b*2n position
-
Schroeder K.T., Daldrop P., McPhee S.A., Lilley D.M. Structure and folding of a rare, natural kink turn in RNA with an A*A pair at the 2b*2n position. RNA 2012, 18:1257-1266.
-
(2012)
RNA
, vol.18
, pp. 1257-1266
-
-
Schroeder, K.T.1
Daldrop, P.2
McPhee, S.A.3
Lilley, D.M.4
-
60
-
-
69949109573
-
From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal
-
Zheng J., Birktoft J.J., Chen Y., Wang T., Sha R., Constantinou P.E., Ginell S.L., Mao C., Seeman N.C. From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal. Nature 2009, 461:74-77.
-
(2009)
Nature
, vol.461
, pp. 74-77
-
-
Zheng, J.1
Birktoft, J.J.2
Chen, Y.3
Wang, T.4
Sha, R.5
Constantinou, P.E.6
Ginell, S.L.7
Mao, C.8
Seeman, N.C.9
-
61
-
-
77953645331
-
Nanomaterials based on DNA
-
Seeman N.C. Nanomaterials based on DNA. Annu Rev Biochem 2010, 79:65-87.
-
(2010)
Annu Rev Biochem
, vol.79
, pp. 65-87
-
-
Seeman, N.C.1
-
62
-
-
84878614233
-
A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders
-
Lehmann J., Jossinet F., Gautheret D. A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders. Nucleic Acids Res 2013, 41:5494-5502.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 5494-5502
-
-
Lehmann, J.1
Jossinet, F.2
Gautheret, D.3
-
63
-
-
84881664828
-
Structure and function of the T-loop structural motif in noncoding RNAs
-
Chan C.W., Chetnani B., Mondragón A. Structure and function of the T-loop structural motif in noncoding RNAs. Wiley Interdiscip Rev RNA 2013, 4:507-522.
-
(2013)
Wiley Interdiscip Rev RNA
, vol.4
, pp. 507-522
-
-
Chan, C.W.1
Chetnani, B.2
Mondragón, A.3
-
64
-
-
84876907659
-
T box RNA decodes both the information content and geometry of tRNA to affect gene expression
-
Grigg J.C., Chen Y., Grundy F.J., Henkin T.M., Pollack L., Ke A. T box RNA decodes both the information content and geometry of tRNA to affect gene expression. Proc Natl Acad Sci USA 2013, 110:7240-7245.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 7240-7245
-
-
Grigg, J.C.1
Chen, Y.2
Grundy, F.J.3
Henkin, T.M.4
Pollack, L.5
Ke, A.6
-
65
-
-
84887407372
-
Structural determinants for geometry and information decoding of tRNA by T box leader RNA
-
Grigg J.C., Ke A. Structural determinants for geometry and information decoding of tRNA by T box leader RNA. Structure 2013, 21:2025-2032.
-
(2013)
Structure
, vol.21
, pp. 2025-2032
-
-
Grigg, J.C.1
Ke, A.2
-
66
-
-
0031951789
-
Crystal structure of an RNA aptamer-protein complex at 2.8Å resolution
-
Convery M.A., Rowsell S., Stonehouse N.J., Ellington A.D., Hirao I., Murray J.B., Peabody D.S., Phillips S.E., Stockley P.G. Crystal structure of an RNA aptamer-protein complex at 2.8Å resolution. Nat Struct Biol 1998, 5:133-139.
-
(1998)
Nat Struct Biol
, vol.5
, pp. 133-139
-
-
Convery, M.A.1
Rowsell, S.2
Stonehouse, N.J.3
Ellington, A.D.4
Hirao, I.5
Murray, J.B.6
Peabody, D.S.7
Phillips, S.E.8
Stockley, P.G.9
-
67
-
-
37849019313
-
Structural basis for the coevolution of a viral RNA-protein complex
-
Chao J.A., Patskovsky Y., Almo S.C., Singer R.H. Structural basis for the coevolution of a viral RNA-protein complex. Nat Struct Mol Biol 2008, 15:103-105.
-
(2008)
Nat Struct Mol Biol
, vol.15
, pp. 103-105
-
-
Chao, J.A.1
Patskovsky, Y.2
Almo, S.C.3
Singer, R.H.4
-
68
-
-
79955407832
-
Real-time observation of transcription initiation and elongation on an endogenous yeast gene
-
Larson D.R., Zenklusen D., Wu B., Chao J.A., Singer R.H. Real-time observation of transcription initiation and elongation on an endogenous yeast gene. Science 2011, 332:475-478.
-
(2011)
Science
, vol.332
, pp. 475-478
-
-
Larson, D.R.1
Zenklusen, D.2
Wu, B.3
Chao, J.A.4
Singer, R.H.5
-
71
-
-
77956029649
-
A polyhedron made of tRNAs
-
Severcan I., Geary C., Chworos A., Voss N., Jacovetty E., Jaeger L. A polyhedron made of tRNAs. Nat Chem 2010, 2:772-779.
-
(2010)
Nat Chem
, vol.2
, pp. 772-779
-
-
Severcan, I.1
Geary, C.2
Chworos, A.3
Voss, N.4
Jacovetty, E.5
Jaeger, L.6
-
72
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis N.B., Westhof E. Geometric nomenclature and classification of RNA base pairs. RNA 2001, 7:499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
|