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Volumn 279, Issue 3, 1998, Pages 621-631

A general module for RNA crystallization

Author keywords

Crystallization; Group II intron; HDV ribozyme; RNA; Tetraloop receptor

Indexed keywords

ARTICLE; BIOCHEMISTRY; CRYSTALLIZATION; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; RNA STRUCTURE; X RAY CRYSTALLOGRAPHY;

EID: 0032511181     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.1789     Document Type: Article
Times cited : (103)

References (46)
  • 1
    • 0029670279 scopus 로고    scopus 로고
    • Catalytic role of 2′-hydroxyl groups within a group II intron active site
    • Abramovitz D.L., Friedman R.A., Pyle A.M. Catalytic role of 2′-hydroxyl groups within a group II intron active site. Science. 271:1996;1410-1413
    • (1996) Science , vol.271 , pp. 1410-1413
    • Abramovitz, D.L.1    Friedman, R.A.2    Pyle, A.M.3
  • 2
    • 44949289693 scopus 로고
    • Crystallization of DNA binding proteins with oligodeoxynucleotides
    • Aggarwal A.K. Crystallization of DNA binding proteins with oligodeoxynucleotides. Methods. 1:1990;83-90
    • (1990) Methods , vol.1 , pp. 83-90
    • Aggarwal, A.K.1
  • 3
    • 0030596508 scopus 로고    scopus 로고
    • Sequence variation as a strategy for crystallizing RNA motifs
    • Anderson A.C., Earp B.E., Frederick C.A. Sequence variation as a strategy for crystallizing RNA motifs. J. Mol. Biol. 259:1996;696-703
    • (1996) J. Mol. Biol. , vol.259 , pp. 696-703
    • Anderson, A.C.1    Earp, B.E.2    Frederick, C.A.3
  • 4
    • 0028332817 scopus 로고
    • Cis- and trans-acting ribozymes from a human pathogen, hepatitis delta virus
    • Been M.D. Cis- and trans-acting ribozymes from a human pathogen, hepatitis delta virus. Trends Biochem. Sci. 19:1994;251-256
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 251-256
    • Been, M.D.1
  • 5
    • 0026495873 scopus 로고
    • Secondary structure of the self-cleaving RNA of hepatitis delta virus: Applications to catalytic RNA design
    • Been M.D., Perrotta A.T., Rosenstein S.P. Secondary structure of the self-cleaving RNA of hepatitis delta virus applications to catalytic RNA design. Biochemistry. 31:1992;11843-11852
    • (1992) Biochemistry , vol.31 , pp. 11843-11852
    • Been, M.D.1    Perrotta, A.T.2    Rosenstein, S.P.3
  • 6
    • 0030417238 scopus 로고    scopus 로고
    • Nucleic acid crystallography: A view from the nucleic acid database
    • Berman H.M., Gelbin A., Westbrook J. Nucleic acid crystallography a view from the nucleic acid database. Prog. Biophys. Mol. Biol. 66:1996;255-288
    • (1996) Prog. Biophys. Mol. Biol. , vol.66 , pp. 255-288
    • Berman, H.M.1    Gelbin, A.2    Westbrook, J.3
  • 7
    • 0031463994 scopus 로고    scopus 로고
    • Solution structure of a GAAA tetraloop receptor RNA
    • Butcher S.E., Dieckmann T., Feigon J. Solution structure of a GAAA tetraloop receptor RNA. EMBO J. 16:1997;7490-7499
    • (1997) EMBO J. , vol.16 , pp. 7490-7499
    • Butcher, S.E.1    Dieckmann, T.2    Feigon, J.3
  • 9
    • 0028569768 scopus 로고
    • Catalytic site components common to both splicing steps of a group II intron
    • Chanfreau G., Jacquier A. Catalytic site components common to both splicing steps of a group II intron. Science. 266:1994;1383-1387
    • (1994) Science , vol.266 , pp. 1383-1387
    • Chanfreau, G.1    Jacquier, A.2
  • 10
    • 0029312926 scopus 로고
    • Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proof-reading mechanism for 5′-splice site selection
    • Chin K., Pyle A.M. Branch-point attack in group II introns is a highly reversible transesterification, providing a potential proof-reading mechanism for 5′-splice site selection. RNA. 1:1995;391-406
    • (1995) RNA , vol.1 , pp. 391-406
    • Chin, K.1    Pyle, A.M.2
  • 11
    • 0030587526 scopus 로고    scopus 로고
    • Domain elucidation by mass spectrometry
    • Cohen S.L. Domain elucidation by mass spectrometry. Structure. 4:1996;1013-1016
    • (1996) Structure , vol.4 , pp. 1013-1016
    • Cohen, S.L.1
  • 12
    • 0030856333 scopus 로고    scopus 로고
    • Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain
    • Correll C.C., Freeborn B., Moore P.B., Steitz T.A. Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain. Cell. 91:1997;705-712
    • (1997) Cell , vol.91 , pp. 705-712
    • Correll, C.C.1    Freeborn, B.2    Moore, P.B.3    Steitz, T.A.4
  • 13
    • 0028921811 scopus 로고
    • Frequent use of the same tertiary motif by self-folding RNAs
    • Costa M., Michel F. Frequent use of the same tertiary motif by self-folding RNAs. EMBO J. 14:1995;1276-1285
    • (1995) EMBO J. , vol.14 , pp. 1276-1285
    • Costa, M.1    Michel, F.2
  • 14
    • 0030959348 scopus 로고    scopus 로고
    • Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: Comparison with in vivo evolution
    • Costa M., Michel F. Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection comparison with in vivo evolution. EMBO J. 16:1997;3289-3302
    • (1997) EMBO J. , vol.16 , pp. 3289-3302
    • Costa, M.1    Michel, F.2
  • 15
    • 0001434101 scopus 로고
    • Crystallizing proteins-a rational approach?
    • D'Arcy A. Crystallizing proteins-a rational approach? Acta Crystallog. sect. D. 50:1994;469-471
    • (1994) Acta Crystallog. Sect. D , vol.50 , pp. 469-471
    • D'Arcy, A.1
  • 16
    • 0029927857 scopus 로고    scopus 로고
    • Two competing pathways for self-splicing by group II introns: A quantitative analysis of in vitro reaction rates and products
    • Daniels D.L., Michels W.J., Pyle A.M. Two competing pathways for self-splicing by group II introns a quantitative analysis of in vitro reaction rates and products. J. Mol. Biol. 256:1996;31-49
    • (1996) J. Mol. Biol. , vol.256 , pp. 31-49
    • Daniels, D.L.1    Michels, W.J.2    Pyle, A.M.3
  • 17
    • 0027263683 scopus 로고
    • Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing
    • Dib-Hajj S.D., Boulanger S.C., Hebbar S.K., Peebles C.L., Franzen J.S., Perlman P.S. Domain 5 interacts with domain 6 and influences the second transesterification reaction of group II intron self-splicing. Nucl. Acids Res. 21:1993;1797-1804
    • (1993) Nucl. Acids Res. , vol.21 , pp. 1797-1804
    • Dib-Hajj, S.D.1    Boulanger, S.C.2    Hebbar, S.K.3    Peebles, C.L.4    Franzen, J.S.5    Perlman, P.S.6
  • 18
    • 0029258956 scopus 로고
    • Self-assembly of a group I intron active site from its component tertiary structural domains
    • Doudna J.A., Cech T.R. Self-assembly of a group I intron active site from its component tertiary structural domains. RNA. 1:1995;36-45
    • (1995) RNA , vol.1 , pp. 36-45
    • Doudna, J.A.1    Cech, T.R.2
  • 19
    • 0027237520 scopus 로고
    • Crystallization of ribozymes and small RNA motifs by a sparse matrix approach
    • Doudna J., Grosshans C., Gooding A., Kundrot C.E. Crystallization of ribozymes and small RNA motifs by a sparse matrix approach. Proc. Natl Acad. Sci. USA. 90:1993;7829-7833
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 7829-7833
    • Doudna, J.1    Grosshans, C.2    Gooding, A.3    Kundrot, C.E.4
  • 21
    • 0028773466 scopus 로고
    • Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies
    • 567
    • Ferré-D'Amaré A.R., Burley S.K. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure. 2:1994;357-359. 567
    • (1994) Structure , vol.2 , pp. 357-359
    • Ferré-D'Amaré, A.R.1    Burley, S.K.2
  • 22
    • 0031050734 scopus 로고    scopus 로고
    • Dynamic light scattering in evaluating crystallizability of macromolecules
    • Ferré-D'Amaré A.R., Burley S.K. Dynamic light scattering in evaluating crystallizability of macromolecules. Methods Enzymol. 276:1997;157-166
    • (1997) Methods Enzymol. , vol.276 , pp. 157-166
    • Ferré-D'Amaré, A.R.1    Burley, S.K.2
  • 23
    • 0029919746 scopus 로고    scopus 로고
    • Use of cis- and trans-ribozymes to remove 5′ and 3′ heterogeneities from milligrams of in vitro transcribed RNA
    • Ferré-D'Amaré A.R., Doudna J.A. Use of cis- and trans-ribozymes to remove 5′ and 3′ heterogeneities from milligrams of in vitro transcribed RNA. Nucl. Acids Res. 24:1996;977-978
    • (1996) Nucl. Acids Res. , vol.24 , pp. 977-978
    • Ferré-D'Amaré, A.R.1    Doudna, J.A.2
  • 24
    • 0031213875 scopus 로고    scopus 로고
    • Crystals by design: A strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron
    • Golden B.L., Podell E.R., Gooding A.R., Cech T.R. Crystals by design a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron. J. Mol. Biol. 270:1997;711-723
    • (1997) J. Mol. Biol. , vol.270 , pp. 711-723
    • Golden, B.L.1    Podell, E.R.2    Gooding, A.R.3    Cech, T.R.4
  • 26
    • 0026000848 scopus 로고
    • Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs
    • Holbrook S.R., Cheong C., Tinoco I. Jr, Kim S.-H. Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs. Nature. 353:1991;579-581
    • (1991) Nature , vol.353 , pp. 579-581
    • Holbrook, S.R.1    Cheong, C.2    Tinoco Jr., I.3    Kim, S.-H.4
  • 27
    • 0024022167 scopus 로고
    • Group II intron domain 5 facilitates a trans-splicing reaction
    • Jarrell K.A., Dietrich R.C., Perlman P.S. Group II intron domain 5 facilitates a trans-splicing reaction. Mol. Cell. Biol. 8:1988;2361-2366
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 2361-2366
    • Jarrell, K.A.1    Dietrich, R.C.2    Perlman, P.S.3
  • 28
    • 0343742528 scopus 로고    scopus 로고
    • Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron
    • Jestin J.-L., Deme E., Jacquier A. Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron. EMBO J. 16:1997;2945-2954
    • (1997) EMBO J. , vol.16 , pp. 2945-2954
    • Jestin, J.-L.1    Deme, E.2    Jacquier, A.3
  • 30
    • 0029071510 scopus 로고
    • The molecular biology of hepatitis delta virus
    • Lai M.M. The molecular biology of hepatitis delta virus. Annu. Rev. Biochem. 64:1995;259-286
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 259-286
    • Lai, M.M.1
  • 32
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel F., Ferat J. Structure and activities of group II introns. Annu. Rev. Biochem. 64:1995;435-461
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.2
  • 33
    • 0024428420 scopus 로고
    • Comparative and functional anatomy of group II catalytic introns-a review
    • Michel F., Umesono K., Ozeki H. Comparative and functional anatomy of group II catalytic introns-a review. Gene. 82:1989;5-30
    • (1989) Gene , vol.82 , pp. 5-30
    • Michel, F.1    Umesono, K.2    Ozeki, H.3
  • 34
    • 0028904152 scopus 로고
    • Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: Elucidation of reaction mechanism and structure/function relationships
    • Michels W.J., Pyle A.M. Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides elucidation of reaction mechanism and structure/function relationships. Biochemistry. 34:1995;2965-2977
    • (1995) Biochemistry , vol.34 , pp. 2965-2977
    • Michels, W.J.1    Pyle, A.M.2
  • 37
    • 0028063567 scopus 로고
    • Three-dimensional structure of a hammerhead ribozyme
    • Pley H.W., Flaherty K.M., McKay D.B. Three-dimensional structure of a hammerhead ribozyme. Nature. 372:1994;68-74
    • (1994) Nature , vol.372 , pp. 68-74
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 38
    • 0028037302 scopus 로고
    • Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix
    • Pley H.W., Flaherty K.M., McKay D.B. Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix. Nature. 372:1994;111-113
    • (1994) Nature , vol.372 , pp. 111-113
    • Pley, H.W.1    Flaherty, K.M.2    McKay, D.B.3
  • 39
    • 0029061712 scopus 로고
    • Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions
    • Podar M., Perlman P.S., Padgett R.A. Stereochemical selectivity of group II intron splicing, reverse splicing, and hydrolysis reactions. Mol. Cell. Biol. 15:1995;4466-4478
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4466-4478
    • Podar, M.1    Perlman, P.S.2    Padgett, R.A.3
  • 40
    • 0030090986 scopus 로고    scopus 로고
    • Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage
    • Portmann S., Grimm S., Workman C., Usman N., Egli M. Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem. Biol. 3:1996;173-184
    • (1996) Chem. Biol. , vol.3 , pp. 173-184
    • Portmann, S.1    Grimm, S.2    Workman, C.3    Usman, N.4    Egli, M.5
  • 41
    • 0028351893 scopus 로고
    • Building a kinetic framework for group II intron ribozyme activity: Quantitation of interdomain binding and reaction rate
    • Pyle A.M., Green J.B. Building a kinetic framework for group II intron ribozyme activity quantitation of interdomain binding and reaction rate. Biochemistry. 33:1994;2716-2725
    • (1994) Biochemistry , vol.33 , pp. 2716-2725
    • Pyle, A.M.1    Green, J.B.2
  • 42
    • 0029115376 scopus 로고
    • Rapid crystallization of chemically synthesized hammerhead RNA's using a double screening procedure
    • Scott W.G., Finch J.T., Grenfell R., Fogg J., Smith T., Gait M.J., Klug A. Rapid crystallization of chemically synthesized hammerhead RNA's using a double screening procedure. J. Mol. Biol. 250:1995;327-332
    • (1995) J. Mol. Biol. , vol.250 , pp. 327-332
    • Scott, W.G.1    Finch, J.T.2    Grenfell, R.3    Fogg, J.4    Smith, T.5    Gait, M.J.6    Klug, A.7
  • 43
    • 0029073091 scopus 로고
    • The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
    • Scott W.G., Finch J.T., Klug A. The crystal structure of an all-RNA hammerhead ribozyme a proposed mechanism for RNA catalytic cleavage. Cell. 81:1995;991-1002
    • (1995) Cell , vol.81 , pp. 991-1002
    • Scott, W.G.1    Finch, J.T.2    Klug, A.3
  • 44
    • 0025293108 scopus 로고
    • Crystallization of Escherichia coli catabolite gene activator protein with its DNA binding site. the use of modular DNA
    • Schultz S.C., Shields G.C., Steitz T.A. Crystallization of Escherichia coli catabolite gene activator protein with its DNA binding site. The use of modular DNA. J. Mol. Biol. 213:1990;159-166
    • (1990) J. Mol. Biol. , vol.213 , pp. 159-166
    • Schultz, S.C.1    Shields, G.C.2    Steitz, T.A.3
  • 45


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