메뉴 건너뛰기




Volumn 21, Issue 11, 2013, Pages 2025-2032

Structural determinants for geometry and information decoding of tRNA by T box leader RNA

Author keywords

[No Author keywords available]

Indexed keywords

TRANSFER RNA;

EID: 84887407372     PISSN: 09692126     EISSN: 18784186     Source Type: Journal    
DOI: 10.1016/j.str.2013.09.001     Document Type: Article
Times cited : (50)

References (37)
  • 3
  • 4
    • 84881664828 scopus 로고    scopus 로고
    • Structure and function of the T-loop structural motif in noncoding RNAs
    • C.W. Chan, B. Chetnani, and A. Mondragon Structure and function of the T-loop structural motif in noncoding RNAs Wiley Interdiscip. Rev. RNA 4 2013 507 522
    • (2013) Wiley Interdiscip. Rev. RNA , vol.4 , pp. 507-522
    • Chan, C.W.1    Chetnani, B.2    Mondragon, A.3
  • 5
    • 84871957573 scopus 로고    scopus 로고
    • Correcting pervasive errors in RNA crystallography through enumerative structure prediction
    • F.C. Chou, P. Sripakdeevong, S.M. Dibrov, T. Hermann, and R. Das Correcting pervasive errors in RNA crystallography through enumerative structure prediction Nat. Methods 10 2013 74 76
    • (2013) Nat. Methods , vol.10 , pp. 74-76
    • Chou, F.C.1    Sripakdeevong, P.2    Dibrov, S.M.3    Hermann, T.4    Das, R.5
  • 7
    • 80052036187 scopus 로고    scopus 로고
    • Conformation effects of base modification on the anticodon stem-loop of Bacillus subtilis tRNA(Tyr)
    • A.P. Denmon, J. Wang, and E.P. Nikonowicz Conformation effects of base modification on the anticodon stem-loop of Bacillus subtilis tRNA(Tyr) J. Mol. Biol. 412 2011 285 303
    • (2011) J. Mol. Biol. , vol.412 , pp. 285-303
    • Denmon, A.P.1    Wang, J.2    Nikonowicz, E.P.3
  • 10
    • 71549138669 scopus 로고    scopus 로고
    • The T box mechanism: TRNA as a regulatory molecule
    • N.J. Green, F.J. Grundy, and T.M. Henkin The T box mechanism: tRNA as a regulatory molecule FEBS Lett. 584 2010 318 324
    • (2010) FEBS Lett. , vol.584 , pp. 318-324
    • Green, N.J.1    Grundy, F.J.2    Henkin, T.M.3
  • 11
    • 84876907659 scopus 로고    scopus 로고
    • T box RNA decodes both the information content and geometry of tRNA to affect gene expression
    • J.C. Grigg, Y. Chen, F.J. Grundy, T.M. Henkin, L. Pollack, and A. Ke T box RNA decodes both the information content and geometry of tRNA to affect gene expression Proc. Natl. Acad. Sci. USA 110 2013 7240 7245
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 7240-7245
    • Grigg, J.C.1    Chen, Y.2    Grundy, F.J.3    Henkin, T.M.4    Pollack, L.5    Ke, A.6
  • 12
    • 0027234192 scopus 로고
    • TRNA as a positive regulator of transcription antitermination in B subtilis
    • F.J. Grundy, and T.M. Henkin tRNA as a positive regulator of transcription antitermination in B. subtilis Cell 74 1993 475 482
    • (1993) Cell , vol.74 , pp. 475-482
    • Grundy, F.J.1    Henkin, T.M.2
  • 13
    • 0030901060 scopus 로고    scopus 로고
    • Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination
    • F.J. Grundy, S.E. Hodil, S.M. Rollins, and T.M. Henkin Specificity of tRNA-mRNA interactions in Bacillus subtilis tyrS antitermination J. Bacteriol. 179 1997 2587 2594
    • (1997) J. Bacteriol. , vol.179 , pp. 2587-2594
    • Grundy, F.J.1    Hodil, S.E.2    Rollins, S.M.3    Henkin, T.M.4
  • 14
    • 0033867256 scopus 로고    scopus 로고
    • TRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene
    • F.J. Grundy, J.A. Collins, S.M. Rollins, and T.M. Henkin tRNA determinants for transcription antitermination of the Bacillus subtilis tyrS gene RNA 6 2000 1131 1141
    • (2000) RNA , vol.6 , pp. 1131-1141
    • Grundy, F.J.1    Collins, J.A.2    Rollins, S.M.3    Henkin, T.M.4
  • 15
    • 0036529579 scopus 로고    scopus 로고
    • Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: Disparity between conservation and functional requirements
    • F.J. Grundy, T.R. Moir, M.T. Haldeman, and T.M. Henkin Sequence requirements for terminators and antiterminators in the T box transcription antitermination system: disparity between conservation and functional requirements Nucleic Acids Res. 30 2002 1646 1655
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1646-1655
    • Grundy, F.J.1    Moir, T.R.2    Haldeman, M.T.3    Henkin, T.M.4
  • 16
    • 12344255940 scopus 로고    scopus 로고
    • Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene
    • F.J. Grundy, M.R. Yousef, and T.M. Henkin Monitoring uncharged tRNA during transcription of the Bacillus subtilis glyQS gene J. Mol. Biol. 346 2005 73 81
    • (2005) J. Mol. Biol. , vol.346 , pp. 73-81
    • Grundy, F.J.1    Yousef, M.R.2    Henkin, T.M.3
  • 18
    • 33747602081 scopus 로고    scopus 로고
    • RNA structural motifs: Building blocks of a modular biomolecule
    • D.K. Hendrix, S.E. Brenner, and S.R. Holbrook RNA structural motifs: building blocks of a modular biomolecule Q. Rev. Biophys. 38 2005 221 243
    • (2005) Q. Rev. Biophys. , vol.38 , pp. 221-243
    • Hendrix, D.K.1    Brenner, S.E.2    Holbrook, S.R.3
  • 19
    • 0026504685 scopus 로고
    • Analysis of the Bacillus subtilis tyrS gene: Conservation of a regulatory sequence in multiple tRNA synthetase genes
    • T.M. Henkin, B.L. Glass, and F.J. Grundy Analysis of the Bacillus subtilis tyrS gene: conservation of a regulatory sequence in multiple tRNA synthetase genes J. Bacteriol. 174 1992 1299 1306
    • (1992) J. Bacteriol. , vol.174 , pp. 1299-1306
    • Henkin, T.M.1    Glass, B.L.2    Grundy, F.J.3
  • 20
    • 84861425552 scopus 로고    scopus 로고
    • Linking crystallographic model and data quality
    • P.A. Karplus, and K. Diederichs Linking crystallographic model and data quality Science 336 2012 1030 1033
    • (2012) Science , vol.336 , pp. 1030-1033
    • Karplus, P.A.1    Diederichs, K.2
  • 21
    • 4344596976 scopus 로고    scopus 로고
    • Crystallization of RNA and RNA-protein complexes
    • A. Ke, and J.A. Doudna Crystallization of RNA and RNA-protein complexes Methods 34 2004 408 414
    • (2004) Methods , vol.34 , pp. 408-414
    • Ke, A.1    Doudna, J.A.2
  • 23
    • 84878614233 scopus 로고    scopus 로고
    • A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders
    • J. Lehmann, F. Jossinet, and D. Gautheret A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders Nucleic Acids Res. 41 2013 5494 5502
    • (2013) Nucleic Acids Res. , vol.41 , pp. 5494-5502
    • Lehmann, J.1    Jossinet, F.2    Gautheret, D.3
  • 25
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • C.W. Carter, R.M. Sweets, University of Virginia Charlottesville
    • Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode C.W. Carter, R.M. Sweets, Methods in Enzymology 1997 University of Virginia Charlottesville 307 326
    • (1997) Methods in Enzymology , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 26
    • 0029079497 scopus 로고
    • Aminoacyl-tRNA synthetase gene regulation in Bacillus subtilis: Induction, repression and growth-rate regulation
    • H. Putzer, S. Laalami, A.A. Brakhage, C. Condon, and M. Grunberg-Manago Aminoacyl-tRNA synthetase gene regulation in Bacillus subtilis: induction, repression and growth-rate regulation Mol. Microbiol. 16 1995 709 718
    • (1995) Mol. Microbiol. , vol.16 , pp. 709-718
    • Putzer, H.1    Laalami, S.2    Brakhage, A.A.3    Condon, C.4    Grunberg-Manago, M.5
  • 28
    • 0030795362 scopus 로고    scopus 로고
    • Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS gene
    • S.M. Rollins, F.J. Grundy, and T.M. Henkin Analysis of cis-acting sequence and structural elements required for antitermination of the Bacillus subtilis tyrS gene Mol. Microbiol. 25 1997 411 421
    • (1997) Mol. Microbiol. , vol.25 , pp. 411-421
    • Rollins, S.M.1    Grundy, F.J.2    Henkin, T.M.3
  • 30
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • A. Serganov, and E. Nudler A decade of riboswitches Cell 152 2013 17 24
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 32
    • 41649115061 scopus 로고    scopus 로고
    • Comparative genomic analysis of T-box regulatory systems in bacteria
    • A.G. Vitreschak, A.A. Mironov, V.A. Lyubetsky, and M.S. Gelfand Comparative genomic analysis of T-box regulatory systems in bacteria RNA 14 2008 717 735
    • (2008) RNA , vol.14 , pp. 717-735
    • Vitreschak, A.G.1    Mironov, A.A.2    Lyubetsky, V.A.3    Gelfand, M.S.4
  • 33
    • 79953233677 scopus 로고    scopus 로고
    • Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA
    • J. Wang, and E.P. Nikonowicz Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA J. Mol. Biol. 408 2011 99 117
    • (2011) J. Mol. Biol. , vol.408 , pp. 99-117
    • Wang, J.1    Nikonowicz, E.P.2
  • 34
    • 77953716711 scopus 로고    scopus 로고
    • NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA
    • J. Wang, T.M. Henkin, and E.P. Nikonowicz NMR structure and dynamics of the Specifier Loop domain from the Bacillus subtilis tyrS T box leader RNA Nucleic Acids Res. 38 2010 3388 3398
    • (2010) Nucleic Acids Res. , vol.38 , pp. 3388-3398
    • Wang, J.1    Henkin, T.M.2    Nikonowicz, E.P.3
  • 35
    • 0034897731 scopus 로고    scopus 로고
    • The GA motif: An RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs
    • W.C. Winkler, F.J. Grundy, B.A. Murphy, and T.M. Henkin The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs RNA 7 2001 1165 1172
    • (2001) RNA , vol.7 , pp. 1165-1172
    • Winkler, W.C.1    Grundy, F.J.2    Murphy, B.A.3    Henkin, T.M.4
  • 36
    • 18844412633 scopus 로고    scopus 로고
    • Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA
    • M.R. Yousef, F.J. Grundy, and T.M. Henkin Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA J. Mol. Biol. 349 2005 273 287
    • (2005) J. Mol. Biol. , vol.349 , pp. 273-287
    • Yousef, M.R.1    Grundy, F.J.2    Henkin, T.M.3
  • 37
    • 84881665997 scopus 로고    scopus 로고
    • Co-crystal structure of a T-box riboswitch stem i domain in complex with its cognate tRNA
    • J. Zhang, and A.R. Ferré-D'Amaré Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA Nature 500 2013 363 366
    • (2013) Nature , vol.500 , pp. 363-366
    • Zhang, J.1    Ferré-D'Amaré, A.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.