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Volumn 97, Issue 3, 2014, Pages 1661-1669

Rumen bacterial community evaluated by 454 pyrosequencing and terminal restriction fragment length polymorphism analyses in dairy sheep fed marine algae

Author keywords

16S rDNA; Ewe; Lipid; Ruminal microbiota

Indexed keywords

FAT INTAKE;

EID: 84894084137     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2013-7243     Document Type: Article
Times cited : (64)

References (41)
  • 1
    • 33645450631 scopus 로고    scopus 로고
    • Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes
    • Abdo Z., Schüette U.M.E., Bent S.J., Williams C.J., Forney L.J., Joyce P. Statistical methods for characterizing diversity of microbial communities by analysis of terminal restriction fragment length polymorphisms of 16S rRNA genes. Environ. Microbiol. 2006, 8:929-938.
    • (2006) Environ. Microbiol. , vol.8 , pp. 929-938
    • Abdo, Z.1    Schüette, U.M.E.2    Bent, S.J.3    Williams, C.J.4    Forney, L.J.5    Joyce, P.6
  • 3
    • 77953890446 scopus 로고    scopus 로고
    • Changes in the rumen bacterial community in response to sunflower oil and fish oil supplements in the diet of dairy sheep
    • Belenguer A., Toral P.G., Frutos P., Hervás G. Changes in the rumen bacterial community in response to sunflower oil and fish oil supplements in the diet of dairy sheep. J. Dairy Sci. 2010, 93:3275-3286.
    • (2010) J. Dairy Sci. , vol.93 , pp. 3275-3286
    • Belenguer, A.1    Toral, P.G.2    Frutos, P.3    Hervás, G.4
  • 4
    • 84871622949 scopus 로고    scopus 로고
    • Milk fat depression induced by dietary marine algae in dairy ewes: Persistency of milk fatty acid composition and animal performance responses
    • Bichi E., Hervás G., Toral P.G., Loor J.J., Frutos P. Milk fat depression induced by dietary marine algae in dairy ewes: Persistency of milk fatty acid composition and animal performance responses. J. Dairy Sci. 2013, 96:524-532.
    • (2013) J. Dairy Sci. , vol.96 , pp. 524-532
    • Bichi, E.1    Hervás, G.2    Toral, P.G.3    Loor, J.J.4    Frutos, P.5
  • 5
    • 34548165985 scopus 로고    scopus 로고
    • Changes in rumen biohydrogenation intermediates and ciliate protozoa diversity after algae supplementation to dairy cattle
    • Boeckaert C., Fievez V., Van Hecke D., Verstraete W., Boon N. Changes in rumen biohydrogenation intermediates and ciliate protozoa diversity after algae supplementation to dairy cattle. Eur. J. Lipid Sci. Technol. 2007, 109:767-777.
    • (2007) Eur. J. Lipid Sci. Technol. , vol.109 , pp. 767-777
    • Boeckaert, C.1    Fievez, V.2    Van Hecke, D.3    Verstraete, W.4    Boon, N.5
  • 6
    • 68349147784 scopus 로고    scopus 로고
    • Role of the protozoan Isotricha prostoma, liquid-, and solid-associated bacteria in rumen biohydrogenation of linoleic acid
    • Boeckaert C., Morgavi D.P., Jouany J.P., Maignien L., Boon N., Fievez V. Role of the protozoan Isotricha prostoma, liquid-, and solid-associated bacteria in rumen biohydrogenation of linoleic acid. Animal 2009, 3:961-971.
    • (2009) Animal , vol.3 , pp. 961-971
    • Boeckaert, C.1    Morgavi, D.P.2    Jouany, J.P.3    Maignien, L.4    Boon, N.5    Fievez, V.6
  • 7
    • 55949133834 scopus 로고    scopus 로고
    • Accumulation of trans C-18:1 fatty acids in the rumen after dietary algal supplementation is associated with changes in the Butyrivibrio community
    • Boeckaert C., Vlaeminck B., Fievez V., Maignien L., Dijkstra J., Boon N. Accumulation of trans C-18:1 fatty acids in the rumen after dietary algal supplementation is associated with changes in the Butyrivibrio community. Appl. Environ. Microbiol. 2008, 74:6923-6930.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 6923-6930
    • Boeckaert, C.1    Vlaeminck, B.2    Fievez, V.3    Maignien, L.4    Dijkstra, J.5    Boon, N.6
  • 8
    • 84860353306 scopus 로고    scopus 로고
    • Fast, accurate error-correction of amplicon pyrosequences using Acacia
    • Bragg L., Stone G., Imelfort M., Hugenholtz P., Tyson G.W. Fast, accurate error-correction of amplicon pyrosequences using Acacia. Nat. Methods 2012, 9:425-426.
    • (2012) Nat. Methods , vol.9 , pp. 425-426
    • Bragg, L.1    Stone, G.2    Imelfort, M.3    Hugenholtz, P.4    Tyson, G.W.5
  • 9
    • 78649670032 scopus 로고    scopus 로고
    • Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of pyrosequencing dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway T.R., Dowd S.E., Edrington T.S., Anderson R.C., Krueger N., Bauer N., Kononoff P.J., Nisbet D.J. Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of pyrosequencing dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing. J. Anim. Sci. 2010, 88:3977-3983.
    • (2010) J. Anim. Sci. , vol.88 , pp. 3977-3983
    • Callaway, T.R.1    Dowd, S.E.2    Edrington, T.S.3    Anderson, R.C.4    Krueger, N.5    Bauer, N.6    Kononoff, P.J.7    Nisbet, D.J.8
  • 14
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 15
    • 34249723655 scopus 로고    scopus 로고
    • Advanced sequencing technologies and their wider impact in microbiology
    • Hall N. Advanced sequencing technologies and their wider impact in microbiology. J. Exp. Biol. 2007, 210:1518-1525.
    • (2007) J. Exp. Biol. , vol.210 , pp. 1518-1525
    • Hall, N.1
  • 17
    • 0142062399 scopus 로고    scopus 로고
    • Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment
    • Hongoh Y., Yuzawa M., Okhuma M., Kudo T. Evaluation of primers and PCR conditions for the analysis of 16S rRNA genes from a natural environment. FEMS Microbiol. Lett. 2003, 221:299-304.
    • (2003) FEMS Microbiol. Lett. , vol.221 , pp. 299-304
    • Hongoh, Y.1    Yuzawa, M.2    Okhuma, M.3    Kudo, T.4
  • 18
    • 0028793876 scopus 로고
    • Conversion of oleic acid to 10-hydroxystearic acid by two species of ruminal bacteria
    • Hudson J.A., MacKenzie C.A.M., Joblin K.N. Conversion of oleic acid to 10-hydroxystearic acid by two species of ruminal bacteria. Appl. Microbiol. Biotechnol. 1995, 44:1-6.
    • (1995) Appl. Microbiol. Biotechnol. , vol.44 , pp. 1-6
    • Hudson, J.A.1    MacKenzie, C.A.M.2    Joblin, K.N.3
  • 19
    • 79957979016 scopus 로고    scopus 로고
    • As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation
    • Huws S.A., Kim E.J., Lee M.R.F., Scott M.B., Tweed J.K.S., Pinloche E., Wallace R.J., Scollan N.D. As yet uncultured bacteria phylogenetically classified as Prevotella, Lachnospiraceae incertae sedis and unclassified Bacteroidales, Clostridiales and Ruminococcaceae may play a predominant role in ruminal biohydrogenation. Environ. Microbiol. 2011, 13:1500-1512.
    • (2011) Environ. Microbiol. , vol.13 , pp. 1500-1512
    • Huws, S.A.1    Kim, E.J.2    Lee, M.R.F.3    Scott, M.B.4    Tweed, J.K.S.5    Pinloche, E.6    Wallace, R.J.7    Scollan, N.D.8
  • 21
    • 84858185944 scopus 로고    scopus 로고
    • Composition and similarity of bovine rumen microbiota across individual animals
    • Jami E., Mizrahi I. Composition and similarity of bovine rumen microbiota across individual animals. PLoS ONE 2012, 7:e33306.
    • (2012) PLoS ONE , vol.7
    • Jami, E.1    Mizrahi, I.2
  • 22
    • 84873684861 scopus 로고    scopus 로고
    • Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities
    • Kittelmann S., Seedorf H., Walters W.A., Clemente J.C., Knight R., Gordon J.I., Janssen P.H. Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities. PLoS ONE 2013, 8:e47879.
    • (2013) PLoS ONE , vol.8
    • Kittelmann, S.1    Seedorf, H.2    Walters, W.A.3    Clemente, J.C.4    Knight, R.5    Gordon, J.I.6    Janssen, P.H.7
  • 24
    • 84862797811 scopus 로고    scopus 로고
    • Ruminal microbe of biohydrogenation of trans-vaccenic acid to stearic acid in vitro
    • Li D., Wang J.Q., Bu D.P. Ruminal microbe of biohydrogenation of trans-vaccenic acid to stearic acid in vitro. BMC Res. Notes 2012, 5:97.
    • (2012) BMC Res. Notes , vol.5 , pp. 97
    • Li, D.1    Wang, J.Q.2    Bu, D.P.3
  • 26
    • 77954537542 scopus 로고    scopus 로고
    • The role of microbes in rumen lipolysis and biohydrogenation and their manipulation
    • Lourenço M., Ramos-Morales E., Wallace R.J. The role of microbes in rumen lipolysis and biohydrogenation and their manipulation. Animal 2010, 4:1008-1023.
    • (2010) Animal , vol.4 , pp. 1008-1023
    • Lourenço, M.1    Ramos-Morales, E.2    Wallace, R.J.3
  • 27
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: A new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: A new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 2005, 71:8228-8235.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 29
    • 34247646166 scopus 로고    scopus 로고
    • Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen
    • Maia M.R., Chaudhary L.C., Figueres L., Wallace R.J. Metabolism of polyunsaturated fatty acids and their toxicity to the microflora of the rumen. Antonie Van Leeuwenhoek 2007, 91:303-314.
    • (2007) Antonie Van Leeuwenhoek , vol.91 , pp. 303-314
    • Maia, M.R.1    Chaudhary, L.C.2    Figueres, L.3    Wallace, R.J.4
  • 33
    • 79958772906 scopus 로고    scopus 로고
    • Effect of fibre- and starch-rich finishing diets on methanogenic Archaea diversity and activity in the rumen of feedlot bulls
    • Popova M., Martin C., Eugène M., Mialon M.M., Doreau M., Morgavi D.P. Effect of fibre- and starch-rich finishing diets on methanogenic Archaea diversity and activity in the rumen of feedlot bulls. Anim. Feed Sci. Technol. 2011, 167:113-121.
    • (2011) Anim. Feed Sci. Technol. , vol.167 , pp. 113-121
    • Popova, M.1    Martin, C.2    Eugène, M.3    Mialon, M.M.4    Doreau, M.5    Morgavi, D.P.6
  • 34
    • 84866285822 scopus 로고    scopus 로고
    • Dietary fish oil supplements modify ruminal biohydrogenation, alter the flow of fatty acids at the omasum, and induce changes in the ruminal Butyrivibrio population in lactating cows
    • Shingfield K.J., Kairenius P., Äröla A., Paillard D., Muetzel S., Ahvenjärvi S., Vanhatalo A., Huhtanen P., Toivonen V., Griinari J.M., Wallace R.J. Dietary fish oil supplements modify ruminal biohydrogenation, alter the flow of fatty acids at the omasum, and induce changes in the ruminal Butyrivibrio population in lactating cows. J. Nutr. 2012, 142:1437-1448.
    • (2012) J. Nutr. , vol.142 , pp. 1437-1448
    • Shingfield, K.J.1    Kairenius, P.2    Äröla, A.3    Paillard, D.4    Muetzel, S.5    Ahvenjärvi, S.6    Vanhatalo, A.7    Huhtanen, P.8    Toivonen, V.9    Griinari, J.M.10    Wallace, R.J.11
  • 35
    • 34247620908 scopus 로고    scopus 로고
    • Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
    • Stevenson D.M., Weimer P.J. Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl. Microbiol. Biotechnol. 2007, 75:165-174.
    • (2007) Appl. Microbiol. Biotechnol. , vol.75 , pp. 165-174
    • Stevenson, D.M.1    Weimer, P.J.2
  • 36
    • 0003185856 scopus 로고    scopus 로고
    • The rumen bacteria
    • Chapman & Hall, London, UK, P.N. Hobson, C.S. Stewart (Eds.)
    • Stewart C.S., Flint H.J., Bryant M.P. The rumen bacteria. The Rumen Microbial Ecosystem 1997, 10-72. Chapman & Hall, London, UK. P.N. Hobson, C.S. Stewart (Eds.).
    • (1997) The Rumen Microbial Ecosystem , pp. 10-72
    • Stewart, C.S.1    Flint, H.J.2    Bryant, M.P.3
  • 37
    • 84894094343 scopus 로고
    • Hydrogenation of linoleic acid by Borrelia B25 and Succinivibrio dextrinosolvens.
    • Tokoyama M.T., Davis C.L. Hydrogenation of linoleic acid by Borrelia B25 and Succinivibrio dextrinosolvens. Fed. Proc. 1970, 29:A691.
    • (1970) Fed. Proc. , vol.29
    • Tokoyama, M.T.1    Davis, C.L.2
  • 38
    • 84856182838 scopus 로고    scopus 로고
    • Fatty acid composition and bacterial community changes in the rumen fluid of lactating sheep fed sunflower oil plus incremental levels of marine algae
    • Toral P.G., Belenguer A., Shingfield K.J., Hervás G., Toivonen V., Frutos P. Fatty acid composition and bacterial community changes in the rumen fluid of lactating sheep fed sunflower oil plus incremental levels of marine algae. J. Dairy Sci. 2012, 95:794-806.
    • (2012) J. Dairy Sci. , vol.95 , pp. 794-806
    • Toral, P.G.1    Belenguer, A.2    Shingfield, K.J.3    Hervás, G.4    Toivonen, V.5    Frutos, P.6
  • 39
    • 0025198865 scopus 로고
    • Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets
    • van Gylswyk N.O. Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets. FEMS Microbiol. Lett. 1990, 73:243-261.
    • (1990) FEMS Microbiol. Lett. , vol.73 , pp. 243-261
    • van Gylswyk, N.O.1
  • 40
    • 84873688248 scopus 로고    scopus 로고
    • The bacterial community composition of the bovine rumen detected using pyrosequencing of 16s rRNA genes
    • Wu S., Baldwin R.L., Li W., Li C., Connor E.E., Li R.W. The bacterial community composition of the bovine rumen detected using pyrosequencing of 16s rRNA genes. Metagenomics 2012, 1:235571.
    • (2012) Metagenomics , vol.1 , pp. 235571
    • Wu, S.1    Baldwin, R.L.2    Li, W.3    Li, C.4    Connor, E.E.5    Li, R.W.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.