Protein quality control in time and space - links to cellular aging

FEMS Yeast Research

Volumn 14, Issue 1, 2014, Pages 40-48

  Nyström, Thomas ^a   Liu, Beidong ^a  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

Author keywords

Asymmetrical inheritance; Replicative aging; Spatial protein quality control

Indexed keywords

FUNGAL PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

ARTICLE; CELL AGING; CELL POLARITY; INHERITANCE; NONHUMAN; PROTEIN QUALITY; QUALITY CONTROL; SPACE; TIME; CELL DIVISION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE; SACCHAROMYCETALES;

CELL DIVISION; GENE EXPRESSION REGULATION; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 84893813516     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/1567-1364.12095     Document Type: Article

References (84)

1. Ackermann M, Stearns SC & Jenal U (2003) Senescence in a bacterium with asymmetric division. Science 300: 1920.
2. Ackermann M, Chao L, Bergstrom CT & Doebeli M (2007) On the evolutionary origin of aging. Aging Cell 6: 235-244.
3. Aguilaniu H, Gustafsson L, Rigoulet M & Nyström T (2003) Asymmetric inheritance of oxidatively damaged proteins during cytokinesis. Science 299: 1751-1753.
4. Austad SN (1993) FRAR course on laboratory approaches to aging. The comparative perspective and choice of animal models in aging research. Aging (Milano) 5: 259-267.
5. Austad SN (1997) Comparative aging and life histories in mammals. Exp Gerontol 32: 23-38.
6. Ballesteros M, Fredriksson A, Henriksson J & Nystrom T (2001) Bacterial senescence: protein oxidation in non-proliferating cells is dictated by the accuracy of the ribosomes. EMBO J 20: 5280-5289.
7. Bufalino MR, Deveale B & van der Kooy D (2013) The asymmetric segregation of damaged proteins is stem cell-type dependent. J Cell Biol 201: 523-530.
8. Charlesworth B & Charlesworth D (2000) Reproductive isolation: natural selection at work. Curr Biol 10: R68-R70.
9. Dong Y, Pruyne D & Bretscher A (2003) Formin-dependent actin assembly is regulated by distinct modes of Rho signaling in yeast. J Cell Biol 161: 1081-1092.
10. Drenos F & Kirkwood TB (2005) Modelling the disposable soma theory of ageing. Mech Ageing Dev 126: 99-103.
11. Dukan S & Nystrom T (1998) Bacterial senescence: stasis results in increased and differential oxidation of cytoplasmic proteins leading to developmental induction of the heat shock regulon. Genes Dev 12: 3431-3441.
12. Dukan S, Farewell A, Ballesteros M, Taddei F, Radman M & Nystrom T (2000) Protein oxidation in response to increased transcriptional or translational errors. P Natl Acad Sci USA 97: 5746-5749.
13. Erjavec N & Nystrom T (2007) Sir2p-dependent protein segregation gives rise to a superior reactive oxygen species management in the progeny of Saccharomyces cerevisiae. P Natl Acad Sci USA 104: 10877-10881.
14. Erjavec N, Larsson L, Grantham J & Nyström T (2007) Accelerated aging and failure to segregate damaged proteins in Sir2 mutants can be suppressed by overproducing the protein aggregation-remodeling factor Hsp104p. Genes Dev 21: 2410-2421.
15. Erjavec N, Cvijovic M, Klipp E & Nystrom T (2008) Selective benefits of damage partitioning in unicellular systems and its effects on aging. P Natl Acad Sci USA 105: 18764-18769.
16. Ferenci T (2005) Maintaining a healthy SPANC balance through regulatory and mutational adaptation. Mol Microbiol 57: 1-8.
17. Fredriksson A & Nystrom T (2006) Conditional and replicative senescence in Escherichia coli. Curr Opin Microbiol 9: 612-618.
18. Gallant J & Palmer L (1979) Error propagation in viable cells. Mech Ageing Dev 10: 27-38.
19. Gladyshev VN (2013) The origin of aging: imperfectness-driven non-random damage defines the aging process and control of lifespan. Trends Genet 29: 506-512.
20. Guarente L (2000) Sir2 links chromatin silencing, metabolism, and aging. Genes Dev 14: 1021-1026.
21. Guarente L (2001) SIR2 and aging-the exception that proves the rule. Trends Genet 17: 391-392.
22. Guarente L (2010) Forever young. Cell 140: 176-178.
23. Gummesson B, Magnusson LU, Lovmar M et al. (2009) Increased RNA polymerase availability directs resources towards growth at the expense of maintenance. EMBO J 28: 2209-2219.
24. Hamilton WD (1966) The moulding of senescence by natural selection. J Theor Biol 12: 12-45.
25. Hernebring M, Brolen G, Aguilaniu H, Semb H & Nystrom T (2006) Elimination of damaged proteins during differentiation of embryonic stem cells. P Natl Acad Sci USA 103: 7700-7705.
26. Hernebring M, Fredriksson A, Liljevald M et al. (2013) Removal of damaged proteins during ES cell fate specification requires the proteasome activator PA28. Sci Rep 3: 1381.
27. Holliday R (1975) Growth and death of diploid and transformed human fibroblasts. Fed Proc 34: 51-55.
28. Hughes AL & Gottschling DE (2012) An early age increase in vacuolar pH limits mitochondrial function and lifespan in yeast. Nature 492: 261-265.
29. Jazwinski SM (1993) The genetics of aging in the yeast Saccharomyces cerevisiae. Genetica 91: 35-51.
30. Jazwinski SM (1996) Longevity, genes, and aging. Science 273: 54-59.
31. Jazwinski SM, Kim S, Lai CY & Benguria A (1998) Epigenetic stratification: the role of individual change in the biological aging process. Exp Gerontol 33: 571-580.
32. Johnson LR & Mangel M (2006) Life histories and the evolution of aging in bacteria and other single-celled organisms. Mech Ageing Dev 127: 786-793.
33. Kaeberlein M, McVey M & Guarente L (1999) The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. Genes Dev 13: 2570-2580.
34. Kaganovich D, Kopito R & Frydman J (2008) Misfolded proteins partition between two distinct quality control compartments. Nature 454: 1088-1095.
35. Kawaguchi Y, Kovacs JJ, McLaurin A, Vance JM, Ito A & Yao TP (2003) The deacetylase HDAC6 regulates aggresome formation and cell viability in response to misfolded protein stress. Cell 115: 727-738.
36. Kennedy BK, Austriaco NR Jr & Guarente L (1994) Daughter cells of Saccharomyces cerevisiae from old mothers display a reduced life span. J Cell Biol 127: 1985-1993.
37. Kirkwood TBL (1977) Evolution of ageing. Nature 270: 301-304.
38. Kirkwood TBL (2005) Understanding the odd science of aging. Cell 120: 437-447.
39. Kirkwood TBL & Austad SN (2000) Why do we age? Nature 408: 233-238.
40. Kirkwood TBL & Holliday R (1979) The evolution of ageing and longevity. Proc R Soc Lond B Biol Sci 205: 531-546.
41. Kirkwood TB & Rose MR (1991) Evolution of senescence: late survival sacrificed for reproduction. Philos Trans R Soc Lond B Biol Sci 332: 15-24.
42. Lai CY, Jaruga E, Borghouts C & Jazwinski SM (2002) A mutation in the ATP2 gene abrogates the age asymmetry between mother and daughter cells of the yeast Saccharomyces cerevisiae. Genetics 162: 73-87.
43. Laun P, Pichova A, Madeo F et al. (2001) Aged mother cells of Saccharomyces cerevisiae show markers of oxidative stress and apoptosis. Mol Microbiol 39: 1166-1173.
44. Lindner AB, Madden R, Demarez A, Stewart EJ & Taddei F (2008) Asymmetric segregation of protein aggregates is associated with cellular aging and rejuvenation. P Natl Acad Sci USA 105: 3076-3081.
45. Liu B, Larsson L, Caballero A, Hao X, Oling D, Grantham J & Nystrom T (2010) The polarisome is required for segregation and retrograde transport of protein aggregates. Cell 140: 257-267.
46. Liu B, Larsson L, Franssens V et al. (2011) Segregation of protein aggregates involves actin and the polarity machinery. Cell 147: 959-961.
47. Ljubuncic P & Reznick AZ (2009) The evolutionary theories of aging revisited - a mini-review. Gerontology 55: 205-216.
48. Luckinbill LS & Clare MJ (1985) Selection for life span in Drosophila melanogaster. Heredity (Edinb) 55(Pt 1): 9-18.
49. Macara IG & Mili S (2008) Polarity and differential inheritance-universal attributes of life? Cell 135: 801-812.
50. Maisonneuve E, Fraysse L, Lignon S, Capron L & Dukan S (2008) Carbonylated proteins are detectable only in a degradation-resistant aggregate state in Escherichia coli. J Bacteriol 190: 6609-6614.
51. McMurray MA & Gottschling DE (2003) An age-induced switch to a hyper-recombinational state. Science 301: 1908-1911.
52. Medawar PB (1952) An Unsolved Problem of Biology. Lewis, London.
53. Medvedev ZA (1981) On the immortality of the germ line: genetic and biochemical mechanisms. A review. Mech Ageing Dev 17: 331-359.
54. Moseley JB & Goode BL (2006) The yeast actin cytoskeleton: from cellular function to biochemical mechanism. Microbiol Mol Biol Rev 70: 605-645.
55. Nystrom T (2002) Aging in bacteria. Curr Opin Microbiol 5: 596-601.
56. Nystrom T (2003) Conditional senescence in bacteria: death of the immortals. Mol Microbiol 48: 17-23.
57. Nystrom T (2004a) Growth versus maintenance: a trade-off dictated by RNA polymerase availability and sigma factor competition? Mol Microbiol 54: 855-862.
58. Nystrom T (2004b) Stationary-phase physiology. Annu Rev Microbiol 58: 161-181.
59. Nystrom T (2005) Role of oxidative carbonylation in protein quality control and senescence. EMBO J 24: 1311-1317.
60. Nystrom T (2007) A bacterial kind of aging. PLoS Genet 3: e224.
61. Nystrom T (2011) Spatial protein quality control and the evolution of lineage-specific ageing. Philos Trans R Soc Lond B Biol Sci 366: 71-75.
62. Orgel LE (1963) The maintenance of the accuracy of protein synthesis and its relevance to ageing. P Natl Acad Sci USA 49: 517-521.
63. Orlandi I, Bettiga M, Alberghina L, Nystrom T & Vai M (2010) Sir2-dependent asymmetric segregation of damaged proteins in ubp10 null mutants is independent of genomic silencing. Biochim Biophys Acta 1803: 630-638.
64. Rose MR (1991) Evolutionary Biology of Aging. Oxford University Press, New York, NY.
65. Rujano MA, Bosveld F, Salomons FA et al. (2006) Polarised asymmetric inheritance of accumulated protein damage in higher eukaryotes. PLoS Biol 4: e417.
66. Sampaio-Marques B, Felgueiras C, Silva A et al. (2012) SNCA (alpha-synuclein)-induced toxicity in yeast cells is dependent on sirtuin 2 (Sir2)-mediated mitophagy. Autophagy 8: 1494-1509.
67. Scheckhuber CQ, Erjavec N, Tinazli A, Hamann A, Nystrom T & Osiewacz HD (2007) Reducing mitochondrial fission results in increased life span and fitness of two fungal ageing models. Nat Cell Biol 9: 99-105.
68. Sgro CM & Partridge L (1999) A delayed wave of death from reproduction in Drosophila. Science 286: 2521-2524.
69. Shcheprova Z, Baldi S, Frei SB, Gonnet G & Barral Y (2008) A mechanism for asymmetric segregation of age during yeast budding. Nature 454: 728-734.
70. Sheldrake AR (1974) The ageing, growth and death of cells. Nature 250: 381-385.
71. Sinclair DA & Guarente L (1997) Extrachromosomal rDNA circles-a cause of aging in yeast. Cell 91: 1033-1042.
72. Specht S, Miller SB, Mogk A & Bukau B (2011) Hsp42 is required for sequestration of protein aggregates into deposition sites in Saccharomyces cerevisiae. J Cell Biol 195: 617-629.
73. Spokoini R, Moldavski O, Nahmias Y, England JL, Schuldiner M & Kaganovich D (2012) Confinement to organelle-associated inclusion structures mediates asymmetric inheritance of aggregated protein in budding yeast. Cell Rep 2: 738-747.
74. Stewart E & Taddei F (2005) Aging in Esherichia coli: signals in the noise. BioEssays 27: 983.
75. Stewart EJ, Madden R, Paul G & Taddei F (2005) Aging and death in an organism that reproduces by morphologically symmetric division. PLoS Biol 3: e45.
76. Tessarz P, Schwarz M, Mogk A & Bukau B (2009) The yeast AAA+ chaperone Hsp104 is part of a network that links the actin cytoskeleton with the inheritance of damaged proteins. Mol Cell Biol 29: 3738-3745.
77. Veatch JR, McMurray MA, Nelson ZW & Gottschling DE (2009) Mitochondrial dysfunction leads to nuclear genome instability via an iron-sulfur cluster defect. Cell 137: 1247-1258.
78. Wang P, Robert L, Pelletier J, Dang WL, Taddei F, Wright A & Jun S (2010) Robust growth of Escherichia coli. Curr Biol 20: 1099-1103.
79. Watve M, Parab S, Jogdand P & Keni S (2006) Aging may be a conditional strategic choice and not an inevitable outcome for bacteria. Proc Natl Acad Sci 103: 14831-14835.
80. Weismann A, Poulton EB, Schönland S & Shipley AE (1891) Essays upon Heredity and Kindred Biological Problems. Clarendon Press, Oxford.
81. Williams GC (1957) Pleiotropy, natural selection, and the evolution of senescence. Evolution 11: 398-411.
82. Winkler J, Seybert A, Konig L et al. (2010) Quantitative and spatio-temporal features of protein aggregation in Escherichia coli and consequences on protein quality control and cellular ageing. EMBO J 29: 910-923.
83. Woldringh CL (2005) Is Escherichia coli getting old? BioEssays 27: 770-774.
84. Zhou C, Slaughter BD, Unruh JR, Eldakak A, Rubinstein B & Li R (2011) Motility and segregation of Hsp104-associated protein aggregates in budding yeast. Cell 147: 1186-1196.