-
1
-
-
0023764283
-
Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection
-
doi:10.1038/335167a0
-
Hughes AL, Nei M (1988) Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-170. doi:10.1038/335167a0.
-
(1988)
Nature
, vol.335
, pp. 167-170
-
-
Hughes, A.L.1
Nei, M.2
-
2
-
-
50849122974
-
Patterns of positive selection in six mammalian genomes
-
doi:10.1371/journal.pgen.1000144
-
Kosiol C, Vinar T, da Fonseca RR, Hubisz MJ, Bustamante CD, et al. (2008) Patterns of positive selection in six mammalian genomes. PLoS Genet 4: e1000144. doi:10.1371/journal.pgen.1000144.
-
(2008)
PLoS Genet
, vol.4
-
-
Kosiol, C.1
Vinar, T.2
Da Fonseca, R.R.3
Hubisz, M.J.4
Bustamante, C.D.5
-
3
-
-
30744449488
-
Variation in positive selection in termite GNBPs and relish
-
DOI 10.1093/molbev/msj037
-
Bulmer MS, Crozier RH (2006) Variation in positive selection in termite GNBPs and Relish. Mol Biol Evol 23: 317-326. doi:10.1093/molbev/msj037. (Pubitemid 43100046)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.2
, pp. 317-326
-
-
Bulmer, M.S.1
Crozier, R.H.2
-
4
-
-
73449137909
-
Quantifying adaptive evolution in the Drosophila immune system
-
doi:10.1371/journal.pgen.1000698
-
Obbard DJ, Welch JJ, Kim K-W, Jiggins FM (2009) Quantifying adaptive evolution in the Drosophila immune system. PLoS Genet 5: e1000698. doi:10.1371/journal.pgen.1000698.
-
(2009)
PLoS Genet
, vol.5
-
-
Obbard, D.J.1
Welch, J.J.2
Kim, K.-W.3
Jiggins, F.M.4
-
5
-
-
36549088118
-
Dynamic evolution of the innate immune system in Drosophila
-
DOI 10.1038/ng.2007.60, PII NG200760
-
Sackton TB, Lazzaro BP, Schlenke TA, Evans JD, Hultmark D, et al. (2007) Dynamic evolution of the innate immune system in Drosophila. Nat Genet 39: 1461-1468. doi:10.1038/ng.2007.60. (Pubitemid 350191353)
-
(2007)
Nature Genetics
, vol.39
, Issue.12
, pp. 1461-1468
-
-
Sackton, T.B.1
Lazzaro, B.P.2
Schlenke, T.A.3
Evans, J.D.4
Hultmark, D.5
Clark, A.G.6
-
6
-
-
0041317004
-
Natural selection drives Drosophila immune system evolution
-
Schlenke TA, Begun DJ (2003) Natural selection drives Drosophila immune system evolution. Genetics 164: 1471-1480. (Pubitemid 37102209)
-
(2003)
Genetics
, vol.164
, Issue.4
, pp. 1471-1480
-
-
Schlenke, T.A.1
Begun, D.J.2
-
7
-
-
67749113400
-
Rapid evolution of immune proteins in social insects
-
doi:10.1093/molbev/msp086
-
Viljakainen L, Evans JD, Hasselmann M, Rueppell O, Tingek S, et al. (2009) Rapid evolution of immune proteins in social insects. Mol Biol Evol 26: 1791-1801. doi:10.1093/molbev/msp086.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1791-1801
-
-
Viljakainen, L.1
Evans, J.D.2
Hasselmann, M.3
Rueppell, O.4
Tingek, S.5
-
8
-
-
33750471967
-
Immune pathways and defence mechanisms in honey bees Apis mellifera
-
DOI 10.1111/j.1365-2583.2006.00682.x
-
Evans JD, Aronstein K, Chen YP, Hetru C, Imler J-L, et al. (2006) Immune pathways and defence mechanisms in honey bees Apis mellifera. Insect Mol Biol 15: 645-656. doi:10.1111/j.1365-2583.2006.00682.x. (Pubitemid 44652092)
-
(2006)
Insect Molecular Biology
, vol.15
, Issue.5
, pp. 645-656
-
-
Evans, J.D.1
Aronstein, K.2
Chen, Y.P.3
Hetru, C.4
Imler, J.-L.5
Jiang, H.6
Kanost, M.7
Thompson, G.J.8
Zou, Z.9
Hultmark, D.10
-
9
-
-
77649313832
-
Immunity and other defenses in pea aphids, Acyrthosiphon pisum
-
doi:10.1186/gb-2010-11-2-r21
-
Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, et al. (2010) Immunity and other defenses in pea aphids, Acyrthosiphon pisum. Genome Biol 11: R21. doi:10.1186/gb-2010-11-2-r21.
-
(2010)
Genome Biol
, vol.11
-
-
Gerardo, N.M.1
Altincicek, B.2
Anselme, C.3
Atamian, H.4
Barribeau, S.M.5
-
10
-
-
67649470559
-
Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing
-
doi:10.1186/1471-2164-10-259
-
Sackton TB, Clark AG (2009) Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. BMC Genomics 10: 259. doi:10.1186/1471-2164-10-259.
-
(2009)
BMC Genomics
, vol.10
, pp. 259
-
-
Sackton, T.B.1
Clark, A.G.2
-
11
-
-
34250860637
-
Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes
-
DOI 10.1126/science.1139862
-
Waterhouse RM, Kriventseva EV, Meister S, Xi Z, Alvarez KS, et al. (2007) Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes. Science 316: 1738-1743. doi:10.1126/science.1139862. (Pubitemid 46988547)
-
(2007)
Science
, vol.316
, Issue.5832
, pp. 1738-1743
-
-
Waterhouse, R.M.1
Kriventseva, E.V.2
Meister, S.3
Xi, Z.4
Alvarez, K.S.5
Bartholomay, L.C.6
Barillas-Mury, C.7
Bian, G.8
Blandin, S.9
Christensen, B.M.10
Dong, Y.11
Jiang, H.12
Kanost, M.R.13
Koutsos, A.C.14
Levashina, E.A.15
Li, J.16
Ligoxygakis, P.17
MacCallum, R.M.18
Mayhew, G.F.19
Mendes, A.20
Michel, K.21
Osta, M.A.22
Paskewitz, S.23
Sang, W.S.24
Vlachou, D.25
Wang, L.26
Wei, Q.27
Zheng, L.28
Zou, Z.29
Severson, D.W.30
Raikhel, A.S.31
Kafatos, F.C.32
Dimopoulos, G.33
Zdobnov, E.M.34
Christophides, G.K.35
more..
-
12
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium, doi:10.1038/nature06341
-
Drosophila 12 Genomes Consortium, Clark AG, Eisen MB, Smith DR, Bergman CM, et al. (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature 450: 203-218. doi:10.1038/nature06341.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Bergman, C.M.4
-
13
-
-
33750460281
-
Insights into social insects from the genome of the honeybee Apis mellifera
-
Honeybee Genome Sequencing Consortium
-
Honeybee Genome Sequencing Consortium (2006) Insights into social insects from the genome of the honeybee Apis mellifera. Nature 443: 931-949.
-
(2006)
Nature
, vol.443
, pp. 931-949
-
-
-
14
-
-
36749066016
-
Comparative genomic analysis of the Tribolium immune system
-
doi:10.1186/gb-2007-8-8-r177
-
Zou Z, Evans JD, Lu Z, Zhao P, Williams MJ, et al. (2007) Comparative genomic analysis of the Tribolium immune system. Genome Biol 8: R177. doi:10.1186/gb-2007-8-8-r177.
-
(2007)
Genome Biol
, vol.8
-
-
Zou, Z.1
Evans, J.D.2
Lu, Z.3
Zhao, P.4
Williams, M.J.5
-
15
-
-
74549184089
-
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species
-
doi:10.1126/science.1178028
-
Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, et al. (2010) Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 327: 343-348. doi:10.1126/science.1178028.
-
(2010)
Science
, vol.327
, pp. 343-348
-
-
Werren, J.H.1
Richards, S.2
Desjardins, C.A.3
Niehuis, O.4
Gadau, J.5
-
16
-
-
64849109588
-
Leucine-Rich Repeat Protein Complex Activates Mosquito Complement in Defense Against Plasmodium Parasites
-
doi:10.1126/science.1171400
-
Povelones M, Waterhouse RM, Kafatos FC, Christophides GK (2009) Leucine-Rich Repeat Protein Complex Activates Mosquito Complement in Defense Against Plasmodium Parasites. Science 324: 258-261. doi:10.1126/science.1171400.
-
(2009)
Science
, vol.324
, pp. 258-261
-
-
Povelones, M.1
Waterhouse, R.M.2
Kafatos, F.C.3
Christophides, G.K.4
-
17
-
-
79953725732
-
Exceptional Diversity, Maintenance of Polymorphism, and Recent Directional Selection on the APL1 Malaria Resistance Genes of Anopheles gambiae
-
doi:10.1371/journal.pbio.1000600
-
Rottschaefer SM, Riehle MM, Coulibaly B, Sacko M, Niaré O, et al. (2011) Exceptional Diversity, Maintenance of Polymorphism, and Recent Directional Selection on the APL1 Malaria Resistance Genes of Anopheles gambiae. PLoS Biol 9: e1000600. doi:10.1371/journal.pbio.1000600.
-
(2011)
PLoS Biol
, vol.9
-
-
Rottschaefer, S.M.1
Riehle, M.M.2
Coulibaly, B.3
Sacko, M.4
Niaré, O.5
-
18
-
-
84855902153
-
Adaptive Evolution of a Novel Drosophila Lectin Induced by Parasitic Wasp Attack
-
doi:10.1093/molbev/msr191
-
Keebaugh ES, Schlenke TA (2012) Adaptive Evolution of a Novel Drosophila Lectin Induced by Parasitic Wasp Attack. Mol Biol Evol 29: 565-577. doi:10.1093/molbev/msr191.
-
(2012)
Mol Biol Evol
, vol.29
, pp. 565-577
-
-
Keebaugh, E.S.1
Schlenke, T.A.2
-
19
-
-
84860995894
-
Functional Characterization of the Infection-Inducible Peptide Edin in Drosophila melanogaster
-
doi:10.1371/journal.pone.0037153.t001
-
Vanha-aho L-M, Kleino A, Kaustio M, Ulvila J, Wilke B, et al. (2012) Functional Characterization of the Infection-Inducible Peptide Edin in Drosophila melanogaster. PLoS ONE 7: e37153. doi:10.1371/journal.pone.0037153. t001.
-
(2012)
PLoS ONE
, vol.7
-
-
Vanha-aho, L.-M.1
Kleino, A.2
Kaustio, M.3
Ulvila, J.4
Wilke, B.5
-
20
-
-
0035336824
-
A humoral stress response in Drosophila
-
DOI 10.1016/S0960-9822(01)00203-2
-
Ekengren S, Tryselius Y, Dushay MS, Liu G, Steiner H, et al. (2001) A humoral stress response in Drosophila. Curr Biol CB 11: 714-718. (Pubitemid 32418169)
-
(2001)
Current Biology
, vol.11
, Issue.9
, pp. 714-718
-
-
Ekengren, S.1
Tryselius, Y.2
Dushay, M.S.3
Liu, G.4
Steiner, H.5
Hultmark, D.6
-
21
-
-
80355131963
-
Evidence of a novel immune responsive protein in the Hymenoptera
-
doi:10.1016/j.ibmb.2011.09.006
-
Albert Š, Gätschenberger H, Azzami K, Gimple O, Grimmer G, et al. (2011) Evidence of a novel immune responsive protein in the Hymenoptera. Insect Biochem Mol Biol 41: 968-981. doi:10.1016/j.ibmb.2011.09.006.
-
(2011)
Insect Biochem Mol Biol
, vol.41
, pp. 968-981
-
-
Albert, Š.1
Gätschenberger, H.2
Azzami, K.3
Gimple, O.4
Grimmer, G.5
-
22
-
-
84875854057
-
Differential gene expression in Acromyrmex leaf-cutting ants after challenges with two fungal pathogens
-
doi:10.1111/mec.12255
-
Yek SH, Boomsma JJ, Schiøtt M (2013) Differential gene expression in Acromyrmex leaf-cutting ants after challenges with two fungal pathogens. Mol Ecol 22: 2173-2187. doi:10.1111/mec.12255.
-
(2013)
Mol Ecol
, vol.22
, pp. 2173-2187
-
-
Yek, S.H.1
Boomsma, J.J.2
Schiøtt, M.3
-
23
-
-
34047268684
-
The host defense of Drosophila melanogaster
-
DOI 10.1146/annurev.immunol.25.022106.141615
-
Lemaitre B, Hoffmann J (2007) The host defense of Drosophila melanogaster. Annu Rev Immunol 25: 697-743. doi:10.1146/annurev.immunol.25. 022106.141615. (Pubitemid 46697922)
-
(2007)
Annual Review of Immunology
, vol.25
, pp. 697-743
-
-
Lemaitre, B.1
Hoffmann, J.2
-
24
-
-
0025058306
-
Isolation and characterization of abaecin, a major antibacterialresponse peptide in the honeybee (Apis mellifera)
-
DOI 10.1111/j.1432-1033.1990.tb15315.x
-
Casteels P, Ampe C, Riviere L, Van Damme J, Elicone C, et al. (1990) Isolation and characterization of abaecin, a major antibacterial response peptide in the honeybee (Apis mellifera). Eur J Biochem FEBS 187: 381-386. (Pubitemid 20040397)
-
(1990)
European Journal of Biochemistry
, vol.187
, Issue.2
, pp. 381-386
-
-
Casteels, P.1
Ampe, C.2
Riviere, L.3
Van Damme, J.4
Ellicone, C.5
Fleming, M.6
Jacobs, F.7
Tempst, P.8
-
25
-
-
0030071417
-
Structure-activity analysis of thanatin, a 21-residue inducible insect defense peptide with sequence homology to frog skin antimicrobial peptides
-
DOI 10.1073/pnas.93.3.1221
-
Fehlbaum P, Bulet P, Chernysh S, Briand JP, Roussel JP, et al. (1996) Structure-activity analysis of thanatin, a 21-residue inducible insect defense peptide with sequence homology to frog skin antimicrobial peptides. Proc Natl Acad Sci U S A 93: 1221-1225. (Pubitemid 26052869)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.3
, pp. 1221-1225
-
-
Fehlbaum, P.1
Bulet, P.2
Chernysh, S.3
Briand, J.-P.4
Roussel, J.-P.5
Letellier, L.6
Hetru, C.7
Hoffmann, J.A.8
-
26
-
-
0035940495
-
Gambicin: A novel immune responsive antimicrobial peptide from the malaria vector Anopheles gambiae
-
DOI 10.1073/pnas.221466798
-
Vizioli J, Bulet P, Hoffmann JA, Kafatos FC, Müller HM, et al. (2001) Gambicin: a novel immune responsive antimicrobial peptide from the malaria vector Anopheles gambiae. Proc Natl Acad Sci U S A 98: 12630-12635. doi:10.1073/pnas.221466798. (Pubitemid 33019997)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.22
, pp. 12630-12635
-
-
Vizioli, J.1
Bulet, P.2
Hoffmann, J.A.3
Kafatos, F.C.4
Muller, H.-M.5
Dimopoulos, G.6
-
27
-
-
77956109363
-
Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator
-
doi:10.1126/science.1192428
-
Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, et al. (2010) Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science 329: 1068-1071. doi:10.1126/science.1192428.
-
(2010)
Science
, vol.329
, pp. 1068-1071
-
-
Bonasio, R.1
Zhang, G.2
Ye, C.3
Mutti, N.S.4
Fang, X.5
-
28
-
-
80051559742
-
The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming
-
doi:10.1101/gr.121392.111
-
Nygaard S, Zhang G, Schiøtt M, Li C, Wurm Y, et al. (2011) The genome of the leaf-cutting ant Acromyrmex echinatior suggests key adaptations to advanced social life and fungus farming. Genome Res 21: 1339-1348. doi:10.1101/gr.121392.111.
-
(2011)
Genome Res
, vol.21
, pp. 1339-1348
-
-
Nygaard, S.1
Zhang, G.2
Schiøtt, M.3
Li, C.4
Wurm, Y.5
-
29
-
-
79954986915
-
Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)
-
doi:10.1073/pnas.1008617108
-
Smith CD, Zimin A, Holt C, Abouheif E, Benton R, et al. (2011) Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile). Proc Natl Acad Sci U S A 108: 5673-5678. doi:10.1073/pnas.1008617108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5673-5678
-
-
Smith, C.D.1
Zimin, A.2
Holt, C.3
Abouheif, E.4
Benton, R.5
-
30
-
-
79955002712
-
Draft genome of the red harvester ant Pogonomyrmex barbatus
-
doi:10.1073/pnas.1007901108
-
Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, et al. (2011) Draft genome of the red harvester ant Pogonomyrmex barbatus. Proc Natl Acad Sci U S A 108: 5667-5672. doi:10.1073/pnas.1007901108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5667-5672
-
-
Smith, C.R.1
Smith, C.D.2
Robertson, H.M.3
Helmkampf, M.4
Zimin, A.5
-
31
-
-
79952270451
-
The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle
-
doi:10.1371/journal.pgen.1002007
-
Suen G, Teiling C, Li L, Holt C, Abouheif E, et al. (2011) The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle. PLoS Genet 7: e1002007. doi:10.1371/journal.pgen. 1002007.
-
(2011)
PLoS Genet
, vol.7
-
-
Suen, G.1
Teiling, C.2
Li, L.3
Holt, C.4
Abouheif, E.5
-
32
-
-
79954989004
-
The genome of the fire ant Solenopsis invicta
-
doi:10.1073/pnas.1009690108
-
Wurm Y, Wang J, Riba-Grognuz O, Corona M, Nygaard S, et al. (2011) The genome of the fire ant Solenopsis invicta. Proc Natl Acad Sci U S A 108: 5679-5684. doi:10.1073/pnas.1009690108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 5679-5684
-
-
Wurm, Y.1
Wang, J.2
Riba-Grognuz, O.3
Corona, M.4
Nygaard, S.5
-
33
-
-
33750526053
-
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects
-
DOI 10.1101/gr.5204306
-
Savard J, Tautz D, Richards S, Weinstock GM, Gibbs RA, et al. (2006) Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects. Genome Res 16: 1334-1338. doi:10.1101/gr.5204306. (Pubitemid 44664675)
-
(2006)
Genome Research
, vol.16
, Issue.11
, pp. 1334-1338
-
-
Savard, J.1
Tautz, D.2
Richards, S.3
Weinstock, G.M.4
Gibbs, R.A.5
Werren, J.H.6
Tettelin, H.7
Lercher, M.J.8
-
34
-
-
84866333877
-
Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes
-
doi:10.1371/journal.pone.0045125
-
Brucker RM, Funkhouser LJ, Setia S, Pauly R, Bordenstein SR (2012) Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes. PLoS ONE 7: e45125. doi:10.1371/journal.pone.0045125.
-
(2012)
PLoS ONE
, vol.7
-
-
Brucker, R.M.1
Funkhouser, L.J.2
Setia, S.3
Pauly, R.4
Bordenstein, S.R.5
-
35
-
-
77952574438
-
Antimicrobial peptide-like genes in Nasonia vitripennis: A genomic perspective
-
doi:10.1186/1471-2164-11-187
-
Tian C, Gao B, Fang Q, Ye G, Zhu S (2010) Antimicrobial peptide-like genes in Nasonia vitripennis: a genomic perspective. BMC Genomics 11: 187. doi:10.1186/1471-2164-11-187.
-
(2010)
BMC Genomics
, vol.11
, pp. 187
-
-
Tian, C.1
Gao, B.2
Fang, Q.3
Ye, G.4
Zhu, S.5
-
36
-
-
84655167020
-
The genomic impact of 100 million years of social evolution in seven ant species
-
doi:10.1016/j.tig.2011.08.005
-
Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, et al. (2012) The genomic impact of 100 million years of social evolution in seven ant species. Trends Genet 28: 14-21. doi:10.1016/j.tig.2011.08.005.
-
(2012)
Trends Genet
, vol.28
, pp. 14-21
-
-
Gadau, J.1
Helmkampf, M.2
Nygaard, S.3
Roux, J.4
Simola, D.F.5
-
37
-
-
84866171069
-
Comparative genomics analysis of five families of antimicrobial peptide-like genes in seven ant species
-
doi:10.1016/j.dci.2012.05.003
-
Zhang Z, Zhu S (2012) Comparative genomics analysis of five families of antimicrobial peptide-like genes in seven ant species. Dev Comp Immunol 38: 262-274. doi:10.1016/j.dci.2012.05.003.
-
(2012)
Dev Comp Immunol
, vol.38
, pp. 262-274
-
-
Zhang, Z.1
Zhu, S.2
-
38
-
-
84881151042
-
Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
-
doi:10.1101/gr.155408.113
-
Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, et al. (2013) Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Res 23: 1235-1247. doi:10.1101/gr.155408.113.
-
(2013)
Genome Res
, vol.23
, pp. 1235-1247
-
-
Simola, D.F.1
Wissler, L.2
Donahue, G.3
Waterhouse, R.M.4
Helmkampf, M.5
-
39
-
-
84878808029
-
Transcriptional response of honey bee larvae infected with the bacterial pathogen Paenibacillus larvae
-
doi:10.1371/journal.pone.0065424
-
Cornman RS, Lopez D, Evans JD (2013) Transcriptional response of honey bee larvae infected with the bacterial pathogen Paenibacillus larvae. PloS One 8: e65424. doi:10.1371/journal.pone.0065424.
-
(2013)
PloS One
, vol.8
-
-
Cornman, R.S.1
Lopez, D.2
Evans, J.D.3
-
40
-
-
77953663202
-
Transcriptional responses in honey bee larvae infected with chalkbrood fungus
-
doi:10.1186/1471-2164-11-391
-
Aronstein KA, Murray KD, Saldivar E (2010) Transcriptional responses in honey bee larvae infected with chalkbrood fungus. BMC Genomics 11: 391. doi:10.1186/1471-2164-11-391.
-
(2010)
BMC Genomics
, vol.11
, pp. 391
-
-
Aronstein, K.A.1
Murray, K.D.2
Saldivar, E.3
-
41
-
-
69549114509
-
The innate immune and systemic response in honey bees to a bacterial pathogen, Paenibacillus larvae
-
doi:10.1186/1471-2164-10-387
-
Chan QWT, Melathopoulos AP, Pernal SF, Foster LJ (2009) The innate immune and systemic response in honey bees to a bacterial pathogen, Paenibacillus larvae. BMC Genomics 10: 387. doi:10.1186/1471-2164-10-387.
-
(2009)
BMC Genomics
, vol.10
, pp. 387
-
-
Chan, Q.W.T.1
Melathopoulos, A.P.2
Pernal, S.F.3
Foster, L.J.4
-
42
-
-
84865172013
-
Pathogen webs in collapsing honey bee colonies
-
doi:10.1371/journal.pone.0043562
-
Cornman RS, Tarpy DR, Chen Y, Jeffreys L, Lopez D, et al. (2012) Pathogen webs in collapsing honey bee colonies. PloS One 7: e43562. doi:10.1371/journal. pone.0043562.
-
(2012)
PloS One
, vol.7
-
-
Cornman, R.S.1
Tarpy, D.R.2
Chen, Y.3
Jeffreys, L.4
Lopez, D.5
-
43
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
DOI 10.1126/science.1146498
-
Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, et al. (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318: 283-287. doi:10.1126/science.1146498. (Pubitemid 47574857)
-
(2007)
Science
, vol.318
, Issue.5848
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.A.6
Quan, P.-L.7
Briese, T.8
Hornig, M.9
Geiser, D.M.10
Martinson, V.11
VanEngelsdorp, D.12
Kalkstein, A.L.13
Drysdale, A.14
Hui, J.15
Zhai, J.16
Cui, L.17
Hutchison, S.K.18
Simons, J.F.19
Egholm, M.20
Pettis, J.S.21
Lipkin, W.I.22
more..
-
44
-
-
82355180987
-
Bees brought to their knees: Microbes affecting honey bee health
-
doi:10.1016/j.tim.2011.09.003
-
Evans JD, Schwarz RS (2011) Bees brought to their knees: microbes affecting honey bee health. Trends Microbiol 19: 614-620. doi:10.1016/j.tim. 2011.09.003.
-
(2011)
Trends Microbiol
, vol.19
, pp. 614-620
-
-
Evans, J.D.1
Schwarz, R.S.2
-
45
-
-
84876996918
-
TopHat2: Accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
doi:10.1186/gb-2013-14-4-r36
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, et al. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 14: R36. doi:10.1186/gb-2013-14-4-r36.
-
(2013)
Genome Biol
, vol.14
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
-
46
-
-
79956307251
-
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
-
doi:10.1101/gr.111120.110
-
Lunter G, Goodson M (2011) Stampy: a statistical algorithm for sensitive and fast mapping of Illumina sequence reads. Genome Res 21: 936-939. doi:10.1101/gr.111120.110.
-
(2011)
Genome Res
, vol.21
, pp. 936-939
-
-
Lunter, G.1
Goodson, M.2
-
47
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
doi:10.1038/nmeth.1923
-
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359. doi:10.1038/nmeth.1923.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
48
-
-
77958471357
-
Differential expression analysis for sequence count data
-
doi:10.1186/gb-2010-11-10-r106
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106. doi:10.1186/gb-2010-11-10-r106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
49
-
-
0035940514
-
Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays
-
DOI 10.1073/pnas.221458698
-
De Gregorio E, Spellman PT, Rubin GM, Lemaitre B (2001) Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. Proc Natl Acad Sci U S A 98: 12590-12595. doi:10.1073/pnas.221458698. (Pubitemid 33019990)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.22
, pp. 12590-12595
-
-
De Gregorio, E.1
Spellman, P.T.2
Rubin, G.M.3
Lemaitre, B.4
-
50
-
-
33645241471
-
Recently evolved genes identified from Drosophila yakuba and D. Erecta accessory gland expressed sequence tags
-
doi:10.1534/genetics.105.050336
-
Begun DJ, Lindfors HA, Thompson ME, Holloway AK (2006) Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland expressed sequence tags. Genetics 172: 1675-1681. doi:10.1534/genetics.105.050336.
-
(2006)
Genetics
, vol.172
, pp. 1675-1681
-
-
Begun, D.J.1
Lindfors, H.A.2
Thompson, M.E.3
Holloway, A.K.4
-
51
-
-
33745585334
-
Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
-
DOI 10.1073/pnas.0509809103
-
Levine MT, Jones CD, Kern AD, Lindfors HA, Begun DJ (2006) Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci U S A 103: 9935-9939. doi:10.1073/pnas.0509809103. (Pubitemid 43993601)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.26
, pp. 9935-9939
-
-
Levine, M.T.1
Jones, C.D.2
Kern, A.D.3
Lindfors, H.A.4
Begun, D.J.5
-
52
-
-
50649090652
-
De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
-
doi:10.1534/genetics.107.084491
-
Cai J, Zhao R, Jiang H, Wang W (2008) De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 179: 487-496. doi:10.1534/genetics.107.084491.
-
(2008)
Genetics
, vol.179
, pp. 487-496
-
-
Cai, J.1
Zhao, R.2
Jiang, H.3
Wang, W.4
-
53
-
-
50649097020
-
On the origin of new genes in Drosophila
-
doi:10.1101/gr.076588.108
-
Zhou Q, Zhang G, Zhang Y, Xu S, Zhao R, et al. (2008) On the origin of new genes in Drosophila. Genome Res 18: 1446-1455. doi:10.1101/gr.076588.108.
-
(2008)
Genome Res
, vol.18
, pp. 1446-1455
-
-
Zhou, Q.1
Zhang, G.2
Zhang, Y.3
Xu, S.4
Zhao, R.5
-
54
-
-
70349645640
-
Recent de novo origin of human protein-coding genes
-
doi:10.1101/gr.095026.109
-
Knowles DG, McLysaght A (2009) Recent de novo origin of human protein-coding genes. Genome Res 19: 1752-1759. doi:10.1101/gr.095026.109.
-
(2009)
Genome Res
, vol.19
, pp. 1752-1759
-
-
Knowles, D.G.1
McLysaght, A.2
-
55
-
-
60149097110
-
Origin of primate orphan genes: A comparative genomics approach
-
doi:10.1093/molbev/msn281
-
Toll-Riera M, Bosch N, Bellora N, Castelo R, Armengol L, et al. (2009) Origin of primate orphan genes: a comparative genomics approach. Mol Biol Evol 26: 603-612. doi:10.1093/molbev/msn281.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 603-612
-
-
Toll-Riera, M.1
Bosch, N.2
Bellora, N.3
Castelo, R.4
Armengol, L.5
-
56
-
-
84887301772
-
De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences
-
doi:10.1371/journal.pgen.1003860
-
Reinhardt JA, Wanjiru BM, Brant AT, Saelao P, Begun DJ, et al. (2013) De Novo ORFs in Drosophila Are Important to Organismal Fitness and Evolved Rapidly from Previously Non-coding Sequences. PLoS Genet 9: e1003860. doi:10.1371/journal.pgen.1003860.
-
(2013)
PLoS Genet
, vol.9
-
-
Reinhardt, J.A.1
Wanjiru, B.M.2
Brant, A.T.3
Saelao, P.4
Begun, D.J.5
-
57
-
-
69449089723
-
More than just orphans: Are taxonomically-restricted genes important in evolution?
-
doi:10.1016/j.tig.2009.07.006
-
Khalturin K, Hemmrich G, Fraune S, Augustin R, Bosch TCG (2009) More than just orphans: are taxonomically-restricted genes important in evolution? Trends Genet TIG 25: 404-413. doi:10.1016/j.tig.2009.07.006.
-
(2009)
Trends Genet TIG
, vol.25
, pp. 404-413
-
-
Khalturin, K.1
Hemmrich, G.2
Fraune, S.3
Augustin, R.4
Bosch, T.C.G.5
-
58
-
-
84876523559
-
Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes
-
doi:10.1093/gbe/evt009
-
Wissler L, Gadau J, Simola DF, Helmkampf M, Bornberg-Bauer E (2013) Mechanisms and Dynamics of Orphan Gene Emergence in Insect Genomes. Genome Biol Evol 5: 439-455. doi:10.1093/gbe/evt009.
-
(2013)
Genome Biol Evol
, vol.5
, pp. 439-455
-
-
Wissler, L.1
Gadau, J.2
Simola, D.F.3
Helmkampf, M.4
Bornberg-Bauer, E.5
-
59
-
-
14044277610
-
Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimocrobial peptide gene expression
-
DOI 10.1073/pnas.0409588102
-
Apidianakis Y, Mindrinos MN, Xiao W, Lau GW, Baldini RL, et al. (2005) Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression. Proc Natl Acad Sci U S A 102: 2573-2578. doi:10.1073/pnas.0409588102. (Pubitemid 40279418)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.7
, pp. 2573-2578
-
-
Apidianakis, Y.1
Mindrinos, M.N.2
Xiao, W.3
Lau, G.W.4
Baldini, R.L.5
Davis, R.W.6
Rahme, L.G.7
-
60
-
-
0036848010
-
Sequential activation of signaling pathways during innate immune responses in Drosophila
-
DOI 10.1016/S1534-5807(02)00325-8
-
Boutros M, Agaisse H, Perrimon N (2002) Sequential activation of signaling pathways during innate immune responses in Drosophila. Dev Cell 3: 711-722. (Pubitemid 35339488)
-
(2002)
Developmental Cell
, vol.3
, Issue.5
, pp. 711-722
-
-
Boutros, M.1
Agaisse, H.2
Perrimon, N.3
-
61
-
-
0037013856
-
The Toll and Imd pathways are the major regulators of the immune response in Drosophila
-
DOI 10.1093/emboj/21.11.2568
-
De Gregorio E, Spellman PT, Tzou P, Rubin GM, Lemaitre B (2002) The Toll and Imd pathways are the major regulators of the immune response in Drosophila. EMBO J 21: 2568-2579. doi:10.1093/emboj/21.11.2568. (Pubitemid 34619373)
-
(2002)
EMBO Journal
, vol.21
, Issue.11
, pp. 2568-2579
-
-
De Gregorio, E.1
Spellman, P.T.2
Tzou, P.3
Rubin, G.M.4
Lemaitre, B.5
-
62
-
-
15044339426
-
Microarray analysis of immune challenged Drosophila hemocytes
-
DOI 10.1016/j.yexcr.2004.12.018
-
Johansson KC, Metzendorf C, Söderhäll K (2005) Microarray analysis of immune challenged Drosophila hemocytes. Exp Cell Res 305: 145-155. doi:10.1016/j.yexcr.2004.12.018. (Pubitemid 40380661)
-
(2005)
Experimental Cell Research
, vol.305
, Issue.1
, pp. 145-155
-
-
Johansson, K.C.1
Metzendorf, C.2
Soderhall, K.3
-
63
-
-
36348932146
-
Microarray analyses reveal distinct roles for Rel proteins in the Drosophila immune response
-
DOI 10.1016/j.dci.2007.04.001, PII S0145305X07000705
-
Pal S, Wu J, Wu LP (2008) Microarray analyses reveal distinct roles for Rel proteins in the Drosophila immune response. Dev Comp Immunol 32: 50-60. doi:10.1016/j.dci.2007.04.001. (Pubitemid 350160915)
-
(2008)
Developmental and Comparative Immunology
, vol.32
, Issue.1
, pp. 50-60
-
-
Pal, S.1
Wu, J.2
Wu, L.P.3
-
64
-
-
23844452699
-
Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species
-
DOI 10.1073/pnas.0502240102
-
Vodovar N, Vinals M, Liehl P, Basset A, Degrouard J, et al. (2005) Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species. Proc Natl Acad Sci U S A 102: 11414-11419. doi:10.1073/pnas.0502240102. (Pubitemid 41153834)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.32
, pp. 11414-11419
-
-
Vodovar, N.1
Vinals, M.2
Liehl, P.3
Basset, A.4
Degrouard, J.5
Spellman, P.6
Boccard, F.7
Lemaitre, B.8
-
65
-
-
84881225406
-
The hologenomic basis of speciation: Gut bacteria cause hybrid lethality in the genus Nasonia
-
doi:10.1126/science.1240659
-
Brucker RM, Bordenstein SR (2013) The hologenomic basis of speciation: gut bacteria cause hybrid lethality in the genus Nasonia. Science 341: 667-669. doi:10.1126/science.1240659.
-
(2013)
Science
, vol.341
, pp. 667-669
-
-
Brucker, R.M.1
Bordenstein, S.R.2
-
66
-
-
0030890625
-
Biology of Wolbachia
-
doi:10.1146/annurev.ento.42.1.587
-
Werren JH (1997) Biology of Wolbachia. Annu Rev Entomol 42: 587-609. doi:10.1146/annurev.ento.42.1.587.
-
(1997)
Annu Rev Entomol
, vol.42
, pp. 587-609
-
-
Werren, J.H.1
-
67
-
-
0025368723
-
Microorganisms associated with chromosome destruction and reproductive isolation between two insect species
-
doi:10.1038/346558a0
-
Breeuwer JA, Werren JH (1990) Microorganisms associated with chromosome destruction and reproductive isolation between two insect species. Nature 346: 558-560. doi:10.1038/346558a0.
-
(1990)
Nature
, vol.346
, pp. 558-560
-
-
Breeuwer, J.A.1
Werren, J.H.2
-
68
-
-
0035825621
-
Wolbachia-induced incompatibility precedes other hybrid incompatibilities in Nasonia
-
DOI 10.1038/35055543
-
Bordenstein SR, O'Hara FP, Werren JH (2001) Wolbachia-induced incompatibility precedes other hybrid incompatibilities in Nasonia. Nature 409: 707-710. doi:10.1038/35055543. (Pubitemid 32144514)
-
(2001)
Nature
, vol.409
, Issue.6821
, pp. 707-710
-
-
Bordenstein, S.R.1
O'Hara, F.P.2
Werren, J.H.3
-
69
-
-
0037854584
-
Host genotype determines cytoplasmic incompatibility type in the haplodiploid genus Nasonia
-
Bordenstein SR, Uy JJ, Werren JH (2003) Host genotype determines cytoplasmic incompatibility type in the haplodiploid genus Nasonia. Genetics 164: 223-233. (Pubitemid 36617707)
-
(2003)
Genetics
, vol.164
, Issue.1
, pp. 223-233
-
-
Bordenstein, S.R.1
Uy, J.J.2
Werren, J.H.3
-
70
-
-
33749376143
-
Paternal chromosome segregation during the first mitotic division determines Wolbachia-induced cytoplasmic incompatibility phenotype
-
DOI 10.1242/jcs.03095
-
Tram U, Fredrick K, Werren JH, Sullivan W (2006) Paternal chromosome segregation during the first mitotic division determines Wolbachia-induced cytoplasmic incompatibility phenotype. J Cell Sci 119: 3655-3663. doi:10.1242/jcs.03095. (Pubitemid 44501869)
-
(2006)
Journal of Cell Science
, vol.119
, Issue.17
, pp. 3655-3663
-
-
Tram, U.1
Fredrick, K.2
Werren, J.H.3
Sullivan, W.4
-
71
-
-
84856062730
-
Host genotype changes bidirectional to unidirectional cytoplasmic incompatibility in Nasonia longicornis
-
(Edinb) doi:10.1038/hdy.2011.53
-
Raychoudhury R, Werren JH (2012) Host genotype changes bidirectional to unidirectional cytoplasmic incompatibility in Nasonia longicornis. Heredity (Edinb) 108: 105-114. doi:10.1038/hdy.2011.53.
-
(2012)
Heredity
, vol.108
, pp. 105-114
-
-
Raychoudhury, R.1
Werren, J.H.2
-
72
-
-
78951486718
-
Decoupling of host-symbiont-phage coadaptations following transfer between insect species
-
doi:10.1534/genetics.110.120675
-
Chafee ME, Zecher CN, Gourley ML, Schmidt VT, Chen JH, et al. (2011) Decoupling of host-symbiont-phage coadaptations following transfer between insect species. Genetics 187: 203-215. doi:10.1534/genetics.110.120675.
-
(2011)
Genetics
, vol.187
, pp. 203-215
-
-
Chafee, M.E.1
Zecher, C.N.2
Gourley, M.L.3
Schmidt, V.T.4
Chen, J.H.5
-
73
-
-
84879030315
-
Accelerated evolution of innate immunity proteins in social insects: Adaptive evolution or relaxed constraint?
-
doi:10.1093/molbev/mst061
-
Harpur BA, Zayed A (2013) Accelerated evolution of innate immunity proteins in social insects: adaptive evolution or relaxed constraint? Mol Biol Evol 30: 1665-1674. doi:10.1093/molbev/mst061.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1665-1674
-
-
Harpur, B.A.1
Zayed, A.2
-
74
-
-
84865074382
-
RSeQC: Quality control of RNA-seq experiments
-
doi:10.1093/bioinformatics/bts356
-
Wang L, Wang S, Li W (2012) RSeQC: quality control of RNA-seq experiments. Bioinforma Oxf Engl 28: 2184-2185. doi:10.1093/bioinformatics/ bts356.
-
(2012)
Bioinforma Oxf Engl
, vol.28
, pp. 2184-2185
-
-
Wang, L.1
Wang, S.2
Li, W.3
-
75
-
-
67049158348
-
Fast statistical alignment
-
doi:10.1371/journal.pcbi.1000392
-
Bradley RK, Roberts A, Smoot M, Juvekar S, Do J, et al. (2009) Fast statistical alignment. PLoS Comput Biol 5: e1000392. doi:10.1371/journal.pcbi. 1000392.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Bradley, R.K.1
Roberts, A.2
Smoot, M.3
Juvekar, S.4
Do, J.5
-
76
-
-
54149093962
-
Evolution of Genes and Repeats in the Nimrod Superfamily
-
doi:10.1093/molbev/msn180
-
Somogyi K, Sipos B, Pénzes Z, Kurucz É, Zsámboki J, et al. (2008) Evolution of Genes and Repeats in the Nimrod Superfamily. Mol Biol Evol 25: 2337-2347. doi:10.1093/molbev/msn180.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 2337-2347
-
-
Somogyi, K.1
Sipos, B.2
Pénzes, Z.3
Kurucz, É.4
Zsámboki, J.5
|