Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Brucker, Robert M ^a   Funkhouser, Lisa J ^a   Setia, Shefali ^a   Pauly, Rini ^a   Bordenstein, Seth R ^a  

^a VANDERBILT UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ADAPTIVE IMMUNITY; ARTICLE; COMPUTER INTERFACE; CONTROLLED STUDY; EXPLORATORY RESEARCH; GENE IDENTIFICATION; GENETIC DATABASE; GENUS; INSECT GENOME; INSECT INNATE IMMUNITY DATABASE; INTERNET; MOLECULAR BIOLOGY; NASONIA GIRAULTI; NASONIA LONGICORNIS; NASONIA VITRIPENNIS; NONHUMAN; ONLINE SYSTEM; PARASITOID; SPECIES IDENTIFICATION;

ANIMALS; DATABASES, GENETIC; GENES, INSECT; GENOME, INSECT; IMMUNITY, INNATE; INSECT PROTEINS; INSECTS; INTERNET; SPECIES SPECIFICITY; WASPS;

ANIMALIA; EUKARYOTA; HEXAPODA; NASONIA; NASONIA GIRAULTI; NASONIA LONGICORNIS; NASONIA VITRIPENNIS;

EID: 84866333877     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045125     Document Type: Article

References (36)

1. Cooper MD, Alder MN, (2006) The evolution of adaptive immune systems. Cell 124: 815-822.
2. Beckage NE (2008) Insect Immunoloty. Oxford: Academic Press.
3. Loker ES, Adema CM, Zhang SM, Kepler TB, (2004) Invertebrate immune systems-not homogeneous, not simple, not well understood. Immunol Rev 198: 10-24.
4. Lazzaro BP, Little TJ, (2009) Immunity in a variable world. Philosophical Transactions of the Royal Society B-Biological Sciences 364: 15-26.
5. Robinson GE, Hackett KJ, Purcell-Miramontes M, Brown SJ, Evans JD, et al. (2011) Creating a buzz about insect genomes. Science 331: 1386.
6. Bordenstein SR, Werren JH, (2007) Bidirectional incompatibility among divergent Wolbachia and incompatibility level differences among closely related Wolbachia in Nasonia. Heredity 99: 278-287.
7. Chafee ME, Zecher CN, Gourley ML, Schmidt VT, Chen JH, et al. (2011) Decoupling of host-symbiont-phage coadaptations following transfer between insect species. Genetics 187: 203-215.
8. Brucker RM, Bordenstein SR, (2012) The roles of host evolutionary relationships (genus: Nasonia) and development in structuring microbial communities. Evolution 66: 349-362.
9. Keller RG, Desplan C, Rosenberg MI, (2010) Identification and characterization of Nasonia Pax genes. Insect Mol Biol 19Suppl 1: 109-120.
10. Lynch JA, El-Sherif E, Brown SJ, (2012) Comparisons of the embryonic development of Drosophila, Nasonia, and Tribolium. Wiley Interdisciplinary Reviews: Developmental Biology 1: 16-39.
11. Loehlin DW, Werren JH, (2012) Evolution of shape by multiple regulatory changes to a growth gene. Science 335: 943-947.
12. Clark ME, O'Hara FP, Chawla A, Werren JH, (2010) Behavioral and spermatogenic hybrid male breakdown in Nasonia. Heredity (Edinb) 104: 289-301.
13. Desjardins CA, Perfectti F, Bartos JD, Enders LS, Werren JH, (2010) The genetic basis of interspecies host preference differences in the model parasitoid Nasonia. Heredity (Edinb) 104: 270-277.
14. Niehuis O, Bullesbach J, Judson AK, Schmitt T, Gadau J, (2011) Genetics of cuticular hydrocarbon differences between males of the parasitoid wasps Nasonia giraulti and Nasonia vitripennis. Heredity (Edinb) 107: 61-70.
15. Blaul B, Ruther J, (2011) How parasitoid females produce sexy sons: a causal link between oviposition preference, dietary lipids and mate choice in Nasonia. Proceedings of the Royal Society B: Biological Sciences 278: 3286-3293.
16. Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, et al. (2010) Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Science 327: 343-348.
17. Waterhouse RM, Kriventseva EV, Meister S, Xi Z, Alvarez KS, et al. (2007) Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes. Science 316: 1738-1743.
18. De Gregorio E, Spellman PT, Rubin GM, Lemaitre B, (2001) Genome-wide analysis of the Drosophila immune response by using oligonucleotide microarrays. Proc Natl Acad Sci U S A 98: 12590-12595.
19. Obbard DJ, Welch JJ, Kim KW, Jiggins FM, (2009) Quantifying adaptive evolution in the Drosophila immune system. PLoS Genet 5: e1000698.
20. Parmakelis A, Moustaka M, Poulakakis N, Louis C, Slotman MA, et al. (2010) Anopheles immune genes and amino acid sites evolving under the effect of positive selection. PLoS One 5: e8885.
21. Evans JD, Aronstein K, Chen YP, Hetru C, Imler JL, et al. (2006) Immune pathways and defence mechanisms in honey bees Apis mellifera. Insect Mol Biol 15: 645-656.
22. Gerardo NM, Altincicek B, Anselme C, Atamian H, Barribeau SM, et al. (2010) Immunity and other defenses in pea aphids, Acyrthosiphon pisum. Genome Biol 11: R21.
23. Christophides GK, Zdobnov E, Barillas-Mury C, Birney E, Blandin S, et al. (2002) Immunity-related genes and gene families in Anopheles gambiae. Science 298: 159-165.
24. Tian C, Gao B, Fang Q, Ye G, Zhu S, (2010) Antimicrobial peptide-like genes in Nasonia vitripennis: a genomic perspective. BMC Genomics 11: 187.
25. Tian C, Wang L, Ye G, Zhu S, (2010) Inhibition of melanization by a Nasonia defensin-like peptide: implications for host immune suppression. J Insect Physiol 56: 1857-1862.
26. Ye J, Zhao H, Wang H, Bian J, Zheng R, (2010) A defensin antimicrobial peptide from the venoms of Nasonia vitripennis. Toxicon 56: 101-106.
27. Ligoxygakis P, Pelte N, Hoffmann JA, Reichhart JM, (2002) Activation of Drosophila Toll during fungal infection by a blood serine protease. Science 297: 114-116.
28. Jang IH, Chosa N, Kim SH, Nam HJ, Lemaitre B, et al. (2006) A Spatzle-processing enzyme required for toll signaling activation in Drosophila innate immunity. Developmental cell 10: 45-55.
29. Katsumi Y, Kihara H, Ochiai M, Ashida M, (1995) A serine protease zymogen in insect plasma. Purification and activation by microbial cell wall components. European journal of biochemistry/FEBS 228: 870-877.
30. Leclerc V, Pelte N, El Chamy L, Martinelli C, Ligoxygakis P, et al. (2006) Prophenoloxidase activation is not required for survival to microbial infections in Drosophila. EMBO reports 7: 231-235.
31. Tang H, Kambris Z, Lemaitre B, Hashimoto C, (2006) Two proteases defining a melanization cascade in the immune system of Drosophila. The Journal of biological chemistry 281: 28097-28104.
32. Zou Z, Shin SW, Alvarez KS, Kokoza V, Raikhel AS, (2010) Distinct melanization pathways in the mosquito Aedes aegypti. Immunity 32: 41-53.
33. Chasan R, Anderson KV, (1989) The role of easter, an apparent serine protease, in organizing the dorsal-ventral pattern of the Drosophila embryo. Cell 56: 391-400.
34. Moussian B, Roth S, (2005) Dorsoventral axis formation in the Drosophila embryo-shaping and transducing a morphogen gradient. Current biology: CB 15: R887-899.
35. Muhlia-Almazan A, Sanchez-Paz A, Garcia-Carreno FL, (2008) Invertebrate trypsins: a review. Journal of comparative physiology B, Biochemical, systemic, and environmental physiology 178: 655-672.
36. Schneider DS, Jin Y, Morisato D, Anderson KV, (1994) A processed form of the Spatzle protein defines dorsal-ventral polarity in the Drosophila embryo. Development 120: 1243-1250.