RSeQC: Quality control of RNA-seq experiments

Bioinformatics

Volumn 28, Issue 16, 2012, Pages 2184-2185

  Wang, Liguo ^a   Wang, Shengqin ^b   Li, Wei ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

^b SOUTHEAST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RNA; TRANSCRIPTOME;

ARTICLE; BIOLOGY; COMPUTER PROGRAM; GENETICS; METHODOLOGY; QUALITY CONTROL; SEQUENCE ANALYSIS;

COMPUTATIONAL BIOLOGY; QUALITY CONTROL; RNA; SEQUENCE ANALYSIS, RNA; SOFTWARE; TRANSCRIPTOME;

EID: 84865074382     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts356     Document Type: Article

References (7)

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3. Goecks, J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
4. Hansen, K. and Brenner, S. (2010) Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Res., 38, e131.
5. Lassmann, T. et al. (2011) SAMStat: monitoring biases in next generation sequencing data. Bioinformatics (Oxford, England), 27, 130-131.
6. Planet, E. et al. (2012) htSeqTools: high-throughput sequencing quality control, processing and visualization in R. Bioinformatics (Oxford, England), 28, 589-590.
7. Reich, M. et al. (2006) GenePattern 2.0. Nat. Genet., 38, 500-501.