r2cat: Synteny plots and comparative assembly

Bioinformatics

Volumn 26, Issue 4, 2009, Pages 570-571

  Husemann, Peter ^a,b   Stoye, Jens ^a  

^a BIELEFELD UNIVERSITY   (Germany)

^b International NRW Graduate School in Bioinformatics and Genome Research   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 77949515650     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp690     Document Type: Article

References (8)

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2. Assefa, S. et al. (2009) ABACAS: algorithm based automatic contiguation of assembled sequences. Bioinformatics, 25, 1968-1969.
3. Husemann, P. and Stoye, J. (2010) Phylogenetic comparative assembly. Algorithms Mol. Biol., 5, 3.
4. Kent, W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
5. Kurtz, S. et al. (2004) Versatile and open software for comparing large genomes. Genome Biol., 5, R12.
6. Rasmussen, K.R. et al. (2006) Efficient q-gram filters for finding all epsilon-matches over a given length. J. Comp. Biol., 13, 296-308.
7. Richter, D.C. et al. (2007) OSLay: optimal syntenic layout of unfinished assemblies. Bioinformatics, 23, 1573-1579.
8. van Hijum, S.A.F.T. et al. (2005) Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res., 33,W560-W566.