메뉴 건너뛰기




Volumn 31, Issue 23, 2012, Pages 4388-4403

CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe

Author keywords

antisense transcription; CHD1; nucleosome positioning; remodeling; S. pombe

Indexed keywords

ADENOSINE TRIPHOSPHATASE; CHD1 REMODELER; HRP1 ADENOSINE TRIPHOSPHATASE; HRP3 ADENOSINE TRIPHOSPHATASE; UNCLASSIFIED DRUG;

EID: 84870510245     PISSN: 02614189     EISSN: 14602075     Source Type: Journal    
DOI: 10.1038/emboj.2012.289     Document Type: Article
Times cited : (75)

References (101)
  • 1
    • 0036928142 scopus 로고    scopus 로고
    • A role for chromatin remodeling in transcriptional termination by RNA polymerase II
    • DOI 10.1016/S1097-2765(02)00778-5
    • Alen C, Kent NA, Jones HS, O'Sullivan J, Aranda A, Proudfoot NJ (2002) A role for chromatin remodeling in transcriptional termination by RNA polymerase II. Mol Cell 10: 1441-1452 (Pubitemid 36050884)
    • (2002) Molecular Cell , vol.10 , Issue.6 , pp. 1441-1452
    • Alen, C.1    Kent, N.A.2    Jones, H.S.3    O'Sullivan, J.4    Aranda, A.5    Proudfoot, N.J.6
  • 2
    • 0022799080 scopus 로고
    • Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements
    • Almer A, Rudolph H, Hinnen A, Hörz W (1986) Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. EMBO J 5: 2689-2696
    • (1986) EMBO J , vol.5 , pp. 2689-2696
    • Almer, A.1    Rudolph, H.2    Hinnen, A.3    Hörz, W.4
  • 3
    • 77949548012 scopus 로고    scopus 로고
    • The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions
    • Andrews AJ, Chen X, Zevin A, Stargell LA, Luger K (2010) The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions. Mol Cell 37: 834-842
    • (2010) Mol Cell , vol.37 , pp. 834-842
    • Andrews, A.J.1    Chen, X.2    Zevin, A.3    Stargell, L.A.4    Luger, K.5
  • 5
    • 79955950854 scopus 로고    scopus 로고
    • Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter
    • Bai L, Ondracka A, Cross FR (2011) Multiple Sequence-Specific Factors Generate the Nucleosome-Depleted Region on CLN2 Promoter. Mol Cell 42: 465-476
    • (2011) Mol Cell , vol.42 , pp. 465-476
    • Bai, L.1    Ondracka, A.2    Cross, F.R.3
  • 8
    • 84870575235 scopus 로고    scopus 로고
    • Histone H2A variants in nucleosomes and chromatin: More or less stable?
    • Bonisch C, Hake SB (2012) Histone H2A variants in nucleosomes and chromatin: more or less stable? Nucleic Acids Res
    • (2012) Nucleic Acids Res
    • Bonisch, C.1    Hake, S.B.2
  • 9
    • 84862979650 scopus 로고    scopus 로고
    • A map of nucleosome positions in yeast at base-pair resolution
    • Brogaard K, Xi L, Wang JP, Widom J (2012) A map of nucleosome positions in yeast at base-pair resolution. Nature 486: 496-501
    • (2012) Nature , vol.486 , pp. 496-501
    • Brogaard, K.1    Xi, L.2    Wang, J.P.3    Widom, J.4
  • 13
    • 56849114880 scopus 로고    scopus 로고
    • Chromatin-and transcriptionrelated factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
    • Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F (2008) Chromatin-and transcriptionrelated factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol 6: e277
    • (2008) PLoS Biol , vol.6
    • Cheung, V.1    Chua, G.2    Batada, N.N.3    Landry, C.R.4    Michnick, S.W.5    Hughes, T.R.6    Winston, F.7
  • 14
    • 79959553631 scopus 로고    scopus 로고
    • Identification of noncoding transcripts from within CENP-A chromatin at fission yeast centromeres
    • Choi ES, Stralfors A, Castillo AG, Durand-Dubief M, Ekwall K, Allshire RC (2011) Identification of noncoding transcripts from within CENP-A chromatin at fission yeast centromeres. J Biol Chem 286: 23600-23607
    • (2011) J Biol Chem , vol.286 , pp. 23600-23607
    • Choi, E.S.1    Stralfors, A.2    Castillo, A.G.3    Durand-Dubief, M.4    Ekwall, K.5    Allshire, R.C.6
  • 15
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • Clapier CR, Cairns BR (2009) The biology of chromatin remodeling complexes. Annu Rev Biochem 78: 273-304
    • (2009) Annu Rev Biochem , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 16
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 à resolution
    • DOI 10.1016/S0022-2836(02)00386-8
    • Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ (2002) Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. J Mol Biol 319: 1097-1113 (Pubitemid 34729421)
    • (2002) Journal of Molecular Biology , vol.319 , Issue.5 , pp. 1097-1113
    • Davey, C.A.1    Sargent, D.F.2    Luger, K.3    Maeder, A.W.4    Richmond, T.J.5
  • 17
    • 44449100870 scopus 로고    scopus 로고
    • Epigenetic control of centromere behavior
    • Ekwall K (2007) Epigenetic control of centromere behavior. Annu Rev Genet 41: 63-81
    • (2007) Annu Rev Genet , vol.41 , pp. 63-81
    • Ekwall, K.1
  • 19
    • 33745122231 scopus 로고    scopus 로고
    • Identification of multiple distinct Snf2 subfamilies with conserved structural motifs
    • DOI 10.1093/nar/gkl295
    • Flaus A, Martin DM, Barton GJ, Owen-Hughes T (2006) Identification of multiple distinct Snf2 subfamilies with conserved structural motifs. Nucleic Acids Res 34: 2887-2905 (Pubitemid 44540417)
    • (2006) Nucleic Acids Research , vol.34 , Issue.10 , pp. 2887-2905
    • Flaus, A.1    Martin, D.M.A.2    Barton, G.J.3    Owen-Hughes, T.4
  • 20
    • 0033199801 scopus 로고    scopus 로고
    • The best yeast?
    • DOI 10.1016/S0168-9525(99)01798-9, PII S0168952599017989
    • Forsburg SL (1999) The best yeast? Trends Genet 15: 340-344 (Pubitemid 29417579)
    • (1999) Trends in Genetics , vol.15 , Issue.9 , pp. 340-344
    • Forsburg, S.L.1
  • 21
    • 48249153426 scopus 로고    scopus 로고
    • The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome
    • Fu Y, Sinha M, Peterson CL, Weng Z (2008) The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet 4: e1000138
    • (2008) PLoS Genet , vol.4
    • Fu, Y.1    Sinha, M.2    Peterson, C.L.3    Weng, Z.4
  • 23
    • 17444373568 scopus 로고    scopus 로고
    • Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant
    • DOI 10.1101/gad.1298905
    • Gelbart ME, Bachman N, Delrow J, Boeke JD, Tsukiyama T (2005) Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant. Genes Dev 19: 942-954 (Pubitemid 40548062)
    • (2005) Genes and Development , vol.19 , Issue.8 , pp. 942-954
    • Gelbart, M.E.1    Bachman, N.2    Delrow, J.3    Boeke, J.D.4    Tsukiyama, T.5
  • 25
    • 81055149855 scopus 로고    scopus 로고
    • Integrity of chromatin and replicating DNA in nuclei released from fission yeast by semi-automated grinding in liquid nitrogen
    • Givens RM, Mesner LD, Hamlin JL, Buck MJ, Huberman JA (2011) Integrity of chromatin and replicating DNA in nuclei released from fission yeast by semi-automated grinding in liquid nitrogen. BMC Res Notes 4: 499
    • (2011) BMC Res Notes , vol.4 , pp. 499
    • Givens, R.M.1    Mesner, L.D.2    Hamlin, J.L.3    Buck, M.J.4    Huberman, J.A.5
  • 27
    • 84864059329 scopus 로고    scopus 로고
    • In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae
    • Gossett AJ, Lieb JD (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8: e1002771
    • (2012) PLoS Genet , vol.8
    • Gossett, A.J.1    Lieb, J.D.2
  • 28
    • 77952236323 scopus 로고    scopus 로고
    • RNAi-dependent formation of heterochromatin and its diverse functions
    • Grewal SI (2010) RNAi-dependent formation of heterochromatin and its diverse functions. Curr Opin Genet Dev 20: 134-141
    • (2010) Curr Opin Genet Dev , vol.20 , pp. 134-141
    • Grewal, S.I.1
  • 29
    • 77954738659 scopus 로고    scopus 로고
    • Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory
    • Halley JE, Kaplan T, Wang AY, Kobor MS, Rine J (2010) Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory. PLoS Biol 8: e1000401
    • (2010) PLoS Biol , vol.8
    • Halley, J.E.1    Kaplan, T.2    Wang, A.Y.3    Kobor, M.S.4    Rine, J.5
  • 30
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • Hartley PD, Madhani HD (2009) Mechanisms that specify promoter nucleosome location and identity. Cell 137: 445-458
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 31
    • 0035839062 scopus 로고    scopus 로고
    • Molecular evidence for the early colonization of land by fungi and plants
    • DOI 10.1126/science.1061457
    • Heckman DS, Geiser DM, Eidell BR, Stauffer RL, Kardos NL, Hedges SB (2001) Molecular evidence for the early colonization of land by fungi and plants. Science 293: 1129-1133 (Pubitemid 32758092)
    • (2001) Science , vol.293 , Issue.5532 , pp. 1129-1133
    • Heckman, D.S.1    Geiser, D.M.2    Eidell, B.R.3    Stauffer, R.L.4    Kardos, N.L.5    Hedges, S.B.6
  • 32
    • 80052805267 scopus 로고    scopus 로고
    • Histone modification: Cause or cog?
    • Henikoff S, Shilatifard A (2011) Histone modification: cause or cog? Trends Genet 27: 389-396
    • (2011) Trends Genet , vol.27 , pp. 389-396
    • Henikoff, S.1    Shilatifard, A.2
  • 33
    • 84860466555 scopus 로고    scopus 로고
    • Nucleosome positioning: Bringing order to the eukaryotic genome
    • Iyer VR (2012) Nucleosome positioning: bringing order to the eukaryotic genome. Trends Cell Biol 22: 250-256
    • (2012) Trends Cell Biol , vol.22 , pp. 250-256
    • Iyer, V.R.1
  • 34
    • 0029026719 scopus 로고
    • Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure
    • Iyer V, Struhl K (1995) Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. EMBO J 14: 2570-2579
    • (1995) EMBO J , vol.14 , pp. 2570-2579
    • Iyer, V.1    Struhl, K.2
  • 36
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: Advances through genomics
    • Jiang C, Pugh BF (2009) Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 10: 161-172
    • (2009) Nat Rev Genet , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 38
    • 0041828953 scopus 로고    scopus 로고
    • Transcription elongation factors repress transcription initiation from cryptic sites
    • DOI 10.1126/science.1087374
    • Kaplan CD, Laprade L, Winston F (2003) Transcription elongation factors repress transcription initiation from cryptic sites. Science 301: 1096-1099 (Pubitemid 37022311)
    • (2003) Science , vol.301 , Issue.5636 , pp. 1096-1099
    • Kaplan, C.D.1    Laprade, L.2    Winston, F.3
  • 41
    • 0016221697 scopus 로고
    • Chromatin structure: A repeating unit of histones and DNA
    • Kornberg RD (1974) Chromatin structure: a repeating unit of histones and DNA. Science 184: 868
    • (1974) Science , vol.184 , pp. 868
    • Kornberg, R.D.1
  • 42
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • DOI 10.1016/S0092-8674(00)81958-3
    • Kornberg RD, Lorch Y (1999) Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98: 285-294 (Pubitemid 29380564)
    • (1999) Cell , vol.98 , Issue.3 , pp. 285-294
    • Kornberg, R.D.1    Lorch, Y.2
  • 43
    • 0023777538 scopus 로고
    • Statistical distributions of nucleosomes: Nonrandom locations by a stochastic mechanism
    • Kornberg RD, Stryer L (1988) Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism. Nucl Acids Res 16: 6677-6690
    • (1988) Nucl Acids Res , vol.16 , pp. 6677-6690
    • Kornberg, R.D.1    Stryer, L.2
  • 44
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • DOI 10.1016/j.cell.2007.02.005, PII S0092867407001845
    • Kouzarides T (2007) Chromatin modifications and their function. Cell 128: 693-705 (Pubitemid 46273577)
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 46
    • 76349103252 scopus 로고    scopus 로고
    • Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
    • Lantermann AB, Straub T, Stralfors A, Yuan GC, Ekwall K, Korber P (2010) Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae. Nat Struct Mol Biol 17: 251-257
    • (2010) Nat Struct Mol Biol , vol.17 , pp. 251-257
    • Lantermann, A.B.1    Straub, T.2    Stralfors, A.3    Yuan, G.C.4    Ekwall, K.5    Korber, P.6
  • 48
    • 18744373022 scopus 로고    scopus 로고
    • Strategies for the reconstitution of chromatin
    • Lusser A, Kadonaga JT (2004) Strategies for the reconstitution of chromatin. Nat Methods 1: 19-26
    • (2004) Nat Methods , vol.1 , pp. 19-26
    • Lusser, A.1    Kadonaga, J.T.2
  • 49
    • 15544369061 scopus 로고    scopus 로고
    • Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly
    • Lusser A, Urwin DL, Kadonaga JT (2005) Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly. Nat Struct Mol Biol 12: 160-166
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 160-166
    • Lusser, A.1    Urwin, D.L.2    Kadonaga, J.T.3
  • 52
    • 0030813155 scopus 로고    scopus 로고
    • Isolation of nuclei for chromatin analysis in fission yeast
    • Mason JA, Mellor J (1997) Isolation of nuclei for chromatin analysis in fission yeast. Nucleic Acids Res 25: 4700-4701 (Pubitemid 27500790)
    • (1997) Nucleic Acids Research , vol.25 , Issue.22 , pp. 4700-4701
    • Mason, J.A.1    Mellor, J.2
  • 54
    • 0348184963 scopus 로고    scopus 로고
    • ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex
    • DOI 10.1126/science.1090701
    • Mizuguchi G, Shen X, Landry J, Wu WH, Sen S, Wu C (2004) ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex. Science 303: 343-348 (Pubitemid 38095768)
    • (2004) Science , vol.303 , Issue.5656 , pp. 343-348
    • Mizuguchi, G.1    Shen, X.2    Landry, J.3    Wu, W.-H.4    Sen, S.5    Wu, C.6
  • 55
    • 78049434489 scopus 로고    scopus 로고
    • Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up-and downstream of transcription start sites
    • MobiusW, Gerland U (2010) Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up-and downstream of transcription start sites. PLoS Comput Biol 6: e1000891
    • (2010) PLoS Comput Biol , vol.6
    • Mobius, W.1    Gerland, U.2
  • 56
    • 49449108027 scopus 로고    scopus 로고
    • Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast
    • Monahan BJ, Villen J, Marguerat S, Bahler J, Gygi SP, Winston F (2008) Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Nat Struct Mol Biol 15: 873-880
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 873-880
    • Monahan, B.J.1    Villen, J.2    Marguerat, S.3    Bahler, J.4    Gygi, S.P.5    Winston, F.6
  • 57
    • 0035920211 scopus 로고    scopus 로고
    • Multistep chromatin assembly on supercoiled plasmid DNA by nucleosome assembly protein-1 and ATP-utilizing chromatin assembly and remodeling factor
    • Nakagawa T, Bulger M, Muramatsu M, Ito T (2001) Multistep chromatin assembly on supercoiled plasmid DNA by nucleosome assembly protein-1 and ATP-utilizing chromatin assembly and remodeling factor. J Biol Chem 276: 27384-27391
    • (2001) J Biol Chem , vol.276 , pp. 27384-27391
    • Nakagawa, T.1    Bulger, M.2    Muramatsu, M.3    Ito, T.4
  • 59
    • 38049055816 scopus 로고    scopus 로고
    • RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes
    • Parnell TJ, Huff JT, Cairns BR (2008) RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes. EMBO J 27: 100-110
    • (2008) EMBO J , vol.27 , pp. 100-110
    • Parnell, T.J.1    Huff, J.T.2    Cairns, B.R.3
  • 60
    • 36148972085 scopus 로고    scopus 로고
    • Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D
    • Perocchi F, Xu Z, Clauder-Munster S, Steinmetz LM (2007) Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D. Nucleic Acids Res 35: e128
    • (2007) Nucleic Acids Res , vol.35
    • Perocchi, F.1    Xu, Z.2    Clauder-Munster, S.3    Steinmetz, L.M.4
  • 61
    • 77749261651 scopus 로고    scopus 로고
    • Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription
    • Quan TK, Hartzog GA (2010) Histone H3K4 and K36 methylation, Chd1 and Rpd3S oppose the functions of Saccharomyces cerevisiae Spt4-Spt5 in transcription. Genetics 184: 321-334
    • (2010) Genetics , vol.184 , pp. 321-334
    • Quan, T.K.1    Hartzog, G.A.2
  • 63
    • 76949093375 scopus 로고    scopus 로고
    • Nucleosome positioning: How is it established, and why does it matter?
    • Radman-Livaja M, Rando OJ (2010) Nucleosome positioning: how is it established, and why does it matter? Dev Biol 339: 258-266
    • (2010) Dev Biol , vol.339 , pp. 258-266
    • Radman-Livaja, M.1    Rando, O.J.2
  • 64
    • 26844511498 scopus 로고    scopus 로고
    • Histone variant H2A.Z Marks the 5′ ends of both active and inactive genes in euchromatin
    • DOI 10.1016/j.cell.2005.10.002, PII S0092867405010251
    • Raisner RM, Hartley PD, Meneghini MD, Bao MZ, Liu CL, Schreiber SL, Rando OJ, Madhani HD (2005) Histone variant H2A.Z marks the 50 ends of both active and inactive genes in euchromatin. Cell 123: 233-248 (Pubitemid 41457214)
    • (2005) Cell , vol.123 , Issue.2 , pp. 233-248
    • Raisner, R.M.1    Hartley, P.D.2    Meneghini, M.D.3    Bao, M.Z.4    Liu, C.L.5    Schreiber, S.L.6    Rando, O.J.7    Madhani, H.D.8
  • 65
    • 84858165145 scopus 로고    scopus 로고
    • Genome-wide structure and organization of eukaryotic pre-initiation complexes
    • Rhee HS, Pugh BF (2012) Genome-wide structure and organization of eukaryotic pre-initiation complexes. Nature 483: 295-301
    • (2012) Nature , vol.483 , pp. 295-301
    • Rhee, H.S.1    Pugh, B.F.2
  • 66
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • DOI 10.1038/nature01595
    • Richmond TJ, Davey CA (2003) The structure of DNA in the nucleosome core. Nature 423: 145-150 (Pubitemid 36569532)
    • (2003) Nature , vol.423 , Issue.6936 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 67
    • 0242495784 scopus 로고    scopus 로고
    • Replication-Independent Assembly of Nucleosome Arrays in a Novel Yeast Chromatin Reconstitution System Involves Antisilencing Factor Asf1p and Chromodomain Protein Chd1p
    • DOI 10.1128/MCB.23.22.7937-7946.2003
    • Robinson KM, Schultz MC (2003) Replication-independent assembly of nucleosome arrays in a novel yeast chromatin reconstitution system involves antisilencing factor Asf1p and chromodomain protein Chd1p. Mol Cell Biol 23: 7937-7946 (Pubitemid 37377487)
    • (2003) Molecular and Cellular Biology , vol.23 , Issue.22 , pp. 7937-7946
    • Robinson, K.M.1    Schultz, M.C.2
  • 68
    • 80052313379 scopus 로고    scopus 로고
    • Podbat: A novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic metaanalysis
    • Sadeghi L, Bonilla C, Stralfors A, Ekwall K, Svensson JP (2011) Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic metaanalysis. PLoS Comput Biol 7: e1002163
    • (2011) PLoS Comput Biol , vol.7
    • Sadeghi, L.1    Bonilla, C.2    Stralfors, A.3    Ekwall, K.4    Svensson, J.P.5
  • 70
    • 0024456709 scopus 로고
    • Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin
    • Satchwell SC, Travers AA (1989) Asymmetry and polarity of nucleosomes in chicken erythrocyte chromatin. EMBO J 8: 229-238 (Pubitemid 19273966)
    • (1989) EMBO Journal , vol.8 , Issue.1 , pp. 229-238
    • Satchwell, S.C.1    Travers, A.A.2
  • 72
    • 60349115060 scopus 로고    scopus 로고
    • Poly(dA:dT) tracts: Major determinants of nucleosome organization
    • Segal E, Widom J (2009) Poly(dA:dT) tracts: major determinants of nucleosome organization. Curr Opin Struct Biol 19: 65-71
    • (2009) Curr Opin Struct Biol , vol.19 , pp. 65-71
    • Segal, E.1    Widom, J.2
  • 73
    • 20444403749 scopus 로고    scopus 로고
    • Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast
    • DOI 10.1016/j.molcel.2005.05.003, PII S1097276505013092
    • Sekinger EA, Moqtaderi Z, Struhl K (2005) Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast. Mol Cell 18: 735-748 (Pubitemid 40804808)
    • (2005) Molecular Cell , vol.18 , Issue.6 , pp. 735-748
    • Sekinger, E.A.1    Moqtaderi, Z.2    Struhl, K.3
  • 74
    • 84870575288 scopus 로고    scopus 로고
    • Hrp3 controls nucleosome positioning to suppress noncoding transcription in eu-and heterochromatin
    • (advance online publication, 18 September 2012; doi:10.1038/emboj.2012. 267
    • Shim YS, Choi Y, Kang K, Cho K, Oh S, Lee J, Grewal SIS, Lee D (2012) Hrp3 controls nucleosome positioning to suppress noncoding transcription in eu-and heterochromatin. EMBO J (advance online publication, 18 September 2012; doi:10.1038/emboj.2012.267
    • (2012) EMBO J
    • Shim, Y.S.1    Choi, Y.2    Kang, K.3    Cho, K.4    Oh, S.5    Lee, J.6    Grewal, S.I.S.7    Lee, D.8
  • 75
    • 0345698603 scopus 로고    scopus 로고
    • Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes
    • DOI 10.1093/emboj/cdg179
    • Simic R, Lindstrom DL, Tran HG, Roinick KL, Costa PJ, Johnson AD, Hartzog GA, Arndt KM (2003) Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes. EMBO J 22: 1846-1856 (Pubitemid 36460141)
    • (2003) EMBO Journal , vol.22 , Issue.8 , pp. 1846-1856
    • Simic, R.1    Lindstrom, D.L.2    Tran, H.G.3    Roinick, K.L.4    Costa, P.J.5    Johnson, A.D.6    Hartzog, G.A.7    Arndt, K.M.8
  • 76
    • 77954091620 scopus 로고    scopus 로고
    • Genome-wide mapping of histone modifications and mass spectrometry reveal H4 acetylation bias and H3K36 methylation at gene promoters in fission yeast
    • Sinha I, Buchanan L, Ronnerblad M, Bonilla C, Durand-Dubief M, Shevchenko A, Grunstein M, Stewart AF, Ekwall K (2010) Genome-wide mapping of histone modifications and mass spectrometry reveal H4 acetylation bias and H3K36 methylation at gene promoters in fission yeast. Epigenomics 2: 377-393
    • (2010) Epigenomics , vol.2 , pp. 377-393
    • Sinha, I.1    Buchanan, L.2    Ronnerblad, M.3    Bonilla, C.4    Durand-Dubief, M.5    Shevchenko, A.6    Grunstein, M.7    Stewart, A.F.8    Ekwall, K.9
  • 78
    • 33745221438 scopus 로고    scopus 로고
    • Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes
    • Stockdale C, Flaus A, Ferreira H, Owen-Hughes T (2006) Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes. J Biol Chem 281: 16279-16288
    • (2006) J Biol Chem , vol.281 , pp. 16279-16288
    • Stockdale, C.1    Flaus, A.2    Ferreira, H.3    Owen-Hughes, T.4
  • 79
    • 33846703987 scopus 로고    scopus 로고
    • SHREC, an Effector Complex for Heterochromatic Transcriptional Silencing
    • DOI 10.1016/j.cell.2006.12.035, PII S0092867407000591
    • Sugiyama T, Cam HP, Sugiyama R, Noma K, Zofall M, Kobayashi R, Grewal SI (2007) SHREC, an effector complex for heterochromatic transcriptional silencing. Cell 128: 491-504 (Pubitemid 46198892)
    • (2007) Cell , vol.128 , Issue.3 , pp. 491-504
    • Sugiyama, T.1    Cam, H.P.2    Sugiyama, R.3    Noma, K.-i.4    Zofall, M.5    Kobayashi, R.6    Grewal, S.I.S.7
  • 80
    • 0000270283 scopus 로고
    • In vivo analysis of nucleosome structure and transcription factor binding in Saccharomyces cerevisiae
    • Svaren J, Venter U, Hörz W (1995) In vivo analysis of nucleosome structure and transcription factor binding in Saccharomyces cerevisiae. Methods in Mol Genet 6: 153-167
    • (1995) Methods in Mol Genet , vol.6 , pp. 153-167
    • Svaren, J.1    Venter, U.2    Hörz, W.3
  • 81
    • 77951965641 scopus 로고    scopus 로고
    • Widespread remodeling of mid-coding sequence nucleosomes by Isw1
    • Tirosh I, Sigal N, Barkai N (2010) Widespread remodeling of mid-coding sequence nucleosomes by Isw1. Genome Biol 11: R49
    • (2010) Genome Biol , vol.11
    • Tirosh, I.1    Sigal, N.2    Barkai, N.3
  • 82
    • 0034657071 scopus 로고    scopus 로고
    • The chrome domain protein Chd1p from budding yeast is an ATP-dependent chromatin-modifying factor
    • Tran HG, Steger DJ, Iyer VR, Johnson AD (2000) The chromo domain protein chd1p from budding yeast is an ATP-dependent chromatin-modifying factor. EMBO J 19: 2323-2331 (Pubitemid 30259013)
    • (2000) EMBO Journal , vol.19 , Issue.10 , pp. 2323-2331
    • Tran, H.G.1    Steger, D.J.2    Iyer, V.R.3    Johnson, A.D.4
  • 83
    • 80555156654 scopus 로고    scopus 로고
    • Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization
    • Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ (2011) Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res 21: 1851-1862
    • (2011) Genome Res , vol.21 , pp. 1851-1862
    • Tsankov, A.1    Yanagisawa, Y.2    Rhind, N.3    Regev, A.4    Rando, O.J.5
  • 85
    • 0033558873 scopus 로고    scopus 로고
    • Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae
    • Tsukiyama T, Palmer J, Landel CC, Shiloach J, Wu C (1999) Characterization of the imitation switch subfamily of ATP-dependent chromatin-remodeling factors in Saccharomyces cerevisiae. Genes Dev 13: 686-697 (Pubitemid 29155975)
    • (1999) Genes and Development , vol.13 , Issue.6 , pp. 686-697
    • Tsukiyama, T.1    Palmer, J.2    Landel, C.C.3    Shiloach, J.4    Wu, C.5
  • 90
    • 34250831538 scopus 로고    scopus 로고
    • A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly
    • DOI 10.1038/sj.emboj.7601728, PII 7601728
    • Walfridsson J, Khorosjutina O, Matikainen P, Gustafsson CM, Ekwall K (2007) A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly. EMBO J 26: 2868-2879 (Pubitemid 46975778)
    • (2007) EMBO Journal , vol.26 , Issue.12 , pp. 2868-2879
    • Walfridsson, J.1    Khorosjutina, O.2    Matikainen, P.3    Gustafsson, C.M.4    Ekwall, K.5
  • 91
    • 37249077649 scopus 로고    scopus 로고
    • Chromatin remodelling at promoters suppresses antisense transcription
    • DOI 10.1038/nature06391, PII NATURE06391
    • Whitehouse I, Rando OJ, Delrow J, Tsukiyama T (2007) Chromatin remodelling at promoters suppresses antisense transcription. Nature 450: 1031-1035 (Pubitemid 350273613)
    • (2007) Nature , vol.450 , Issue.7172 , pp. 1031-1035
    • Whitehouse, I.1    Rando, O.J.2    Delrow, J.3    Tsukiyama, T.4
  • 92
    • 79953775721 scopus 로고    scopus 로고
    • The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes
    • Wippo CJ, Israel L,Watanabe S, Hochheimer A, Peterson CL, Korber P (2011) The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J 30: 1277-1288
    • (2011) EMBO J , vol.30 , pp. 1277-1288
    • Wippo, C.J.1    Israel Lwatanabe, S.2    Hochheimer, A.3    Peterson, C.L.4    Korber, P.5
  • 96
    • 61849095233 scopus 로고    scopus 로고
    • Essential roles of Snf21, a Swi2/Snf2 family chromatin remodeler, in fission yeast mitosis
    • Yamada K, Hirota K, Mizuno K, Shibata T, Ohta K (2008) Essential roles of Snf21, a Swi2/Snf2 family chromatin remodeler, in fission yeast mitosis. Genes Genet Syst 83: 361-372
    • (2008) Genes Genet Syst , vol.83 , pp. 361-372
    • Yamada, K.1    Hirota, K.2    Mizuno, K.3    Shibata, T.4    Ohta, K.5
  • 97
    • 84862643713 scopus 로고    scopus 로고
    • Genome-wide nucleosome specificity and directionality of chromatin remodelers
    • Yen K, Vinayachandran V, Batta K, Koerber RT, Pugh BF (2012) Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers. Cell 149: 1461-1473
    • (2012) Cell , vol.149 , pp. 1461-1473
    • Yen, K.1    Vinayachandran, V.2    Batta, K.3    Koerber, R.T.4    Pugh, B.F.5
  • 98
    • 0034193119 scopus 로고    scopus 로고
    • Fission yeast Hrp1, a chromodomain ATPase, is required for proper chromosome segregation and its overexpression interferes with chromatin condensation
    • Yoo EJ, Jin YH, Jang YK, Bjerling P, Tabish M, Hong SH, Ekwall K, Park SD (2000) Fission yeast hrp1, a chromodomain ATPase, is required for proper chromosome segregation and its overexpression interferes with chromatin condensation. Nucleic Acids Res 28: 2004-2011 (Pubitemid 30229668)
    • (2000) Nucleic Acids Research , vol.28 , Issue.9 , pp. 2004-2011
    • Yoo, E.J.1    Jin, Y.H.2    Jang, Y.K.3    Bjerling, P.4    Tabish, M.5    Hong, S.H.6    Ekwall, K.7    Park, S.D.8
  • 99
    • 22744432660 scopus 로고    scopus 로고
    • Molecular biology: Genome-scale identification of nucleosome positions in S. cerevisiae
    • DOI 10.1126/science.1112178
    • Yuan GC, Liu YJ, Dion MF, Slack MD, Wu LF, Altschuler SJ, Rando OJ (2005) Genome-scale identification of nucleosome positions in S. cerevisiae. Science 309: 626-630 (Pubitemid 41033649)
    • (2005) Science , vol.309 , Issue.5734 , pp. 626-630
    • Yuan, G.-C.1    Liu, Y.-J.2    Dion, M.F.3    Slack, M.D.4    Wu, L.F.5    Altschuler, S.J.6    Rando, O.J.7
  • 100
    • 79956316470 scopus 로고    scopus 로고
    • A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome
    • Zhang Z, Wippo CJ, Wal M, Ward E, Korber P, Pugh BF (2011) A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome. Science 332: 977-980
    • (2011) Science , vol.332 , pp. 977-980
    • Zhang, Z.1    Wippo, C.J.2    Wal, M.3    Ward, E.4    Korber, P.5    Pugh, B.F.6
  • 101
    • 70349292569 scopus 로고    scopus 로고
    • Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
    • Zofall M, Fischer T, Zhang K, Zhou M, Cui B, Veenstra TD, Grewal SI (2009) Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Nature 461: 419-422
    • (2009) Nature , vol.461 , pp. 419-422
    • Zofall, M.1    Fischer, T.2    Zhang, K.3    Zhou, M.4    Cui, B.5    Veenstra, T.D.6    Grewal, S.I.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.