-
1
-
-
0016829492
-
Catechol-O-Methyltransferase: Pharmacological Aspects and Physiological Role
-
Guldberg, H. C.; Marsden, C. A. Catechol-O-Methyltransferase: Pharmacological Aspects and Physiological Role Pharmacol. Rev. 1975, 27, 135-246
-
(1975)
Pharmacol. Rev.
, vol.27
, pp. 135-246
-
-
Guldberg, H.C.1
Marsden, C.A.2
-
2
-
-
0027964721
-
Genomic Organization of the Human Catechol O-methyltransferase Gene and Its Expression from Two Distinct Promoters
-
Tenhunen, J.; Salminen, M.; Lundström, K.; Kiviluoto, T.; Savolainen, R.; Ulmanen, I. Genomic Organization of the Human Catechol O-methyltransferase Gene and Its Expression from Two Distinct Promoters Eur. J. Biochem. 1994, 223, 1049-1059
-
(1994)
Eur. J. Biochem.
, vol.223
, pp. 1049-1059
-
-
Tenhunen, J.1
Salminen, M.2
Lundström, K.3
Kiviluoto, T.4
Savolainen, R.5
Ulmanen, I.6
-
3
-
-
0036482237
-
Catechol-O-methyltransferase and Parkinson's Disease
-
Tai, C.-H.; Wu, R.-M. Catechol-O-methyltransferase and Parkinson's Disease Acta Med. Okayama 2002, 56, 1-6
-
(2002)
Acta Med. Okayama
, vol.56
, pp. 1-6
-
-
Tai, C.-H.1
Wu, R.-M.2
-
4
-
-
33745268904
-
Comparative Study of Ortho- and Meta-nitrated Inhibitors of Catechol-O-methyltransferase: Interactions with the Active Site and Regioselectivity of O-Methylation
-
Palma, P. N.; Rodrigues, M. L.; Archer, M.; Bonifacio, M. J.; Loureiro, A. I.; Learmonth, D. A.; Carrondo, M. A.; Soares-da-Silva, P. Comparative Study of Ortho- and Meta-nitrated Inhibitors of Catechol-O-methyltransferase: Interactions with the Active Site and Regioselectivity of O-Methylation Mol. Pharmacol. 2006, 70, 143-153
-
(2006)
Mol. Pharmacol.
, vol.70
, pp. 143-153
-
-
Palma, P.N.1
Rodrigues, M.L.2
Archer, M.3
Bonifacio, M.J.4
Loureiro, A.I.5
Learmonth, D.A.6
Carrondo, M.A.7
Soares-Da-Silva, P.8
-
5
-
-
0038287034
-
Catechol-O-methyltransferase (COMT): Biochemistry, Molecular Biology, Pharmacology, and Clinical Efficacy of the New Selective COMT Inhibitors
-
Männistö, P. T.; Kaakkola, S. Catechol-O-methyltransferase (COMT): Biochemistry, Molecular Biology, Pharmacology, and Clinical Efficacy of the New Selective COMT Inhibitors Pharmacol. Rev. 1999, 51, 593-628
-
(1999)
Pharmacol. Rev.
, vol.51
, pp. 593-628
-
-
Männistö, P.T.1
Kaakkola, S.2
-
6
-
-
80054999742
-
Enzymatic Methyl Transfer: Role of an Active Site Residue in Generating Active Site Compaction That Correlates with Catalytic Efficiency
-
Zhang, J.; Klinman, J. P. Enzymatic Methyl Transfer: Role of an Active Site Residue in Generating Active Site Compaction That Correlates with Catalytic Efficiency J. Am. Chem. Soc. 2011, 133, 17134-17137
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 17134-17137
-
-
Zhang, J.1
Klinman, J.P.2
-
7
-
-
84961983443
-
Theoretical Modeling of Enzyme Catalytic Power: Analysis of "cratic" and Electrostatic Factors in Catechol O-Methyltransferase
-
Roca, M.; Martí, S.; Andrés, J.; Moliner, V.; Tuñón, I.; Bertrán, J.; Williams, I. H. Theoretical Modeling of Enzyme Catalytic Power: Analysis of "Cratic" and Electrostatic Factors in Catechol O-Methyltransferase J. Am. Chem. Soc. 2003, 125, 7726-7737
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7726-7737
-
-
Roca, M.1
Martí, S.2
Andrés, J.3
Moliner, V.4
Tuñón, I.5
Bertrán, J.6
Williams, I.H.7
-
8
-
-
35848931672
-
Biochemical and Molecular Modeling Studies of the O-Methylation of Various Endogenous and Exogenous Catechol Substrates Catalyzed by Recombinant Human Soluble and Membrane-Bound Catechol-O-Methyltransferases
-
Bai, H.-W.; Shim, J.-Y.; Yu, J.; Zhu, B. T. Biochemical and Molecular Modeling Studies of the O-Methylation of Various Endogenous and Exogenous Catechol Substrates Catalyzed by Recombinant Human Soluble and Membrane-Bound Catechol-O-Methyltransferases Chem. Res. Toxicol. 2007, 20, 1409-1425
-
(2007)
Chem. Res. Toxicol.
, vol.20
, pp. 1409-1425
-
-
Bai, H.-W.1
Shim, J.-Y.2
Yu, J.3
Zhu, B.T.4
-
9
-
-
0028918413
-
Kinetics of Human Soluble and Membrane-Bound Catechol O-Methyltransferase: A Revised Mechanism and Description of the Thermolabile Variant of the Enzyme
-
Lotta, T.; Vidgren, J.; Tilgmann, C.; Ulmanen, I.; Melen, K.; Julkunen, I.; Taskinen, J. Kinetics of Human Soluble and Membrane-Bound Catechol O-Methyltransferase: A Revised Mechanism and Description of the Thermolabile Variant of the Enzyme Biochemistry 1995, 34, 4202-4210
-
(1995)
Biochemistry
, vol.34
, pp. 4202-4210
-
-
Lotta, T.1
Vidgren, J.2
Tilgmann, C.3
Ulmanen, I.4
Melen, K.5
Julkunen, I.6
Taskinen, J.7
-
10
-
-
0013346802
-
Dynamic Aspects of Enzymatic O-Methylation and -Demethylation of Catechols in vitro and in vivo
-
Daly, J. W.; Axelrod, J.; Witkop, B. Dynamic Aspects of Enzymatic O-Methylation and -Demethylation of Catechols In vitro and In vivo J. Biol. Chem. 1960, 235, 1155-1159
-
(1960)
J. Biol. Chem.
, vol.235
, pp. 1155-1159
-
-
Daly, J.W.1
Axelrod, J.2
Witkop, B.3
-
11
-
-
0015370292
-
Catechol O-Methyltransferase IV. Factors Affecting M- and P-Methylation of Substituted Catechols
-
Creveling, C.; Morris, N.; Shimizu, H.; Ong, H.; Daly, J. Catechol O-Methyltransferase IV. Factors Affecting M- and P-Methylation of Substituted Catechols Mol. Pharmacol. 1972, 8, 398-409
-
(1972)
Mol. Pharmacol.
, vol.8
, pp. 398-409
-
-
Creveling, C.1
Morris, N.2
Shimizu, H.3
Ong, H.4
Daly, J.5
-
12
-
-
0032501378
-
Importance of Correlated Motions in Forming Highly Reactive Near Attack Conformations in Catechol O-Methyltransferase
-
Lau, E. Y.; Bruice, T. C. Importance of Correlated Motions in Forming Highly Reactive Near Attack Conformations in Catechol O-Methyltransferase J. Am. Chem. Soc. 1998, 120, 12387-12394
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 12387-12394
-
-
Lau, E.Y.1
Bruice, T.C.2
-
13
-
-
0034658374
-
Flavonols, Flavones and Flavanols-Nature, Occurrence and Dietary Burden
-
Hollman, P. C. H.; Arts, I. C. W. Flavonols, Flavones and Flavanols-Nature, Occurrence and Dietary Burden J. Sci. Food Agric. 2000, 80, 1081-1093
-
(2000)
J. Sci. Food Agric.
, vol.80
, pp. 1081-1093
-
-
Hollman, P.C.H.1
Arts, I.C.W.2
-
14
-
-
64549091494
-
Acasiane A and B and Farnesirane A and B, Diterpene Derivatives from the Roots of Acacia Farnesiana
-
Lin, A.-S.; Lin, C.-R.; Du, Y.-C.; Lübken, T.; Chiang, M. Y.; Chen, I.-H.; Wu, C.-C.; Hwang, T.-L.; Chen, S.-L.; Yen, M.-H. Acasiane A and B and Farnesirane A and B, Diterpene Derivatives from the Roots of Acacia Farnesiana Planta Med. 2009, 75, 256-261
-
(2009)
Planta Med.
, vol.75
, pp. 256-261
-
-
Lin, A.-S.1
Lin, C.-R.2
Du, Y.-C.3
Lübken, T.4
Chiang, M.Y.5
Chen, I.-H.6
Wu, C.-C.7
Hwang, T.-L.8
Chen, S.-L.9
Yen, M.-H.10
-
15
-
-
33748580218
-
Inhibition of Pro-Inflammatory Markers in Primary Bone Marrow-Derived Mouse Macrophages by Naturally Occurring Flavonoids: Analysis of the Structure-Activity Relationship
-
Comalada, M.; Ballester, I.; Bailón, E.; Sierra, S.; Xaus, J.; Gálvez, J.; Medina, F. S. d.; Zarzuelo, A. Inhibition of Pro-Inflammatory Markers in Primary Bone Marrow-Derived Mouse Macrophages by Naturally Occurring Flavonoids: Analysis of the Structure-Activity Relationship Biochem. Pharmacol. 2006, 72, 1010-1021
-
(2006)
Biochem. Pharmacol.
, vol.72
, pp. 1010-1021
-
-
Comalada, M.1
Ballester, I.2
Bailón, E.3
Sierra, S.4
Xaus, J.5
Gálvez, J.6
-
16
-
-
0028085081
-
Catechol-O-Methyltransferase-Catalyzed Rapid O-Methylation of Mutagenic Flavonoids. Metabolic Inactivation as a Possible Reason for Their Lack of Carcinogenicity in vivo
-
Zhu, B. T.; Ezell, E. L.; Liehr, J. G. Catechol-O-Methyltransferase- Catalyzed Rapid O-Methylation of Mutagenic Flavonoids. Metabolic Inactivation as a Possible Reason for Their Lack of Carcinogenicity in vivo J. Biol. Chem. 1994, 269, 292-299
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 292-299
-
-
Zhu, B.T.1
Ezell, E.L.2
Liehr, J.G.3
-
17
-
-
79952851325
-
Role of Catechol-O- Methyltransferase in the Disposition of Luteolin in Rats
-
Chen, Z.; Chen, M.; Pan, H.; Sun, S.; Li, L.; Zeng, S.; Jiang, H. Role of Catechol-O- Methyltransferase in the Disposition of Luteolin in Rats Drug Metab. Dispos. 2011, 39, 667-674
-
(2011)
Drug Metab. Dispos.
, vol.39
, pp. 667-674
-
-
Chen, Z.1
Chen, M.2
Pan, H.3
Sun, S.4
Li, L.5
Zeng, S.6
Jiang, H.7
-
18
-
-
77950424992
-
Platelet-Mediated Metabolism of the Common Dietary Flavonoid, Quercetin
-
Wright, B.; Gibson, T.; Spencer, J.; Lovegrove, J. A.; Gibbins, J. M. Platelet-Mediated Metabolism of the Common Dietary Flavonoid, Quercetin PLoS One 2010, 5, e9673
-
(2010)
PLoS One
, vol.5
, pp. 9673
-
-
Wright, B.1
Gibson, T.2
Spencer, J.3
Lovegrove, J.A.4
Gibbins, J.M.5
-
19
-
-
84876422449
-
Luteolin Is a Rare Substrate of Human Catechol-O-Methyltransferase Favoring a Para-Methylation
-
Chen, Z. J.; Dai, Y. Q.; Kong, S. S.; Song, F. F.; Li, L. P.; Ye, J. F.; Wang, R. W.; Zeng, S.; Zhou, H.; Jiang, H. D. Luteolin Is a Rare Substrate of Human Catechol-O-Methyltransferase Favoring a Para-Methylation Mol. Nutr. Food Res. 2013, 57, 877-885
-
(2013)
Mol. Nutr. Food Res.
, vol.57
, pp. 877-885
-
-
Chen, Z.J.1
Dai, Y.Q.2
Kong, S.S.3
Song, F.F.4
Li, L.P.5
Ye, J.F.6
Wang, R.W.7
Zeng, S.8
Zhou, H.9
Jiang, H.D.10
-
20
-
-
79954617286
-
Regioselectivity of Catechol O-Methyltransferase Confers Enhancement of Catalytic Activity
-
Tsao, D.; Liu, S.; Dokholyan, N. V. Regioselectivity of Catechol O-Methyltransferase Confers Enhancement of Catalytic Activity Chem. Phys. Lett. 2011, 506, 135-138
-
(2011)
Chem. Phys. Lett.
, vol.506
, pp. 135-138
-
-
Tsao, D.1
Liu, S.2
Dokholyan, N.V.3
-
21
-
-
35848931672
-
Biochemical and Molecular Modeling Studies of the O-Methylation of Various Endogenous and Exogenous Catechol Substrates Catalyzed by Recombinant Human Soluble and Membrane-Bound Catechol-O-Methyltransferases†
-
Bai, H.-W.; Shim, J.-Y.; Yu, J.; Zhu, B. T. Biochemical and Molecular Modeling Studies of the O-Methylation of Various Endogenous and Exogenous Catechol Substrates Catalyzed by Recombinant Human Soluble and Membrane-Bound Catechol-O-Methyltransferases† Chem. Res. Toxicol. 2007, 20, 1409-1425
-
(2007)
Chem. Res. Toxicol.
, vol.20
, pp. 1409-1425
-
-
Bai, H.-W.1
Shim, J.-Y.2
Yu, J.3
Zhu, B.T.4
-
22
-
-
84855999383
-
Methylation of Catechins and Procyanidins by Rat and Human Catechol-O-Methyltransferase: Metabolite Profiling and Molecular Modeling Studies
-
Weinert, C. H.; Wiese, S.; Rawel, H. M.; Esatbeyoglu, T.; Winterhalter, P.; Homann, T.; Kulling, S. E. Methylation of Catechins and Procyanidins by Rat and Human Catechol-O-Methyltransferase: Metabolite Profiling and Molecular Modeling Studies Drug Metab. Dispos. 2012, 40, 353-359
-
(2012)
Drug Metab. Dispos.
, vol.40
, pp. 353-359
-
-
Weinert, C.H.1
Wiese, S.2
Rawel, H.M.3
Esatbeyoglu, T.4
Winterhalter, P.5
Homann, T.6
Kulling, S.E.7
-
23
-
-
23044469487
-
On the Nature of the Transition State in Catechol O-Methyltransferase. A Complementary Study Based on Molecular Dynamics and Potential Energy Surface Explorations
-
Roca, M.; Andrés, J.; Moliner, V.; Tuñón, I.; Bertrán, J. On the Nature of the Transition State in Catechol O-Methyltransferase. A Complementary Study Based on Molecular Dynamics and Potential Energy Surface Explorations J. Am. Chem. Soc. 2005, 127, 10648-10655
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 10648-10655
-
-
Roca, M.1
Andrés, J.2
Moliner, V.3
Tuñón, I.4
Bertrán, J.5
-
24
-
-
0034521981
-
Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models
-
Kollman, P. A.; Massova, I.; Reyes, C.; Kuhn, B.; Huo, S.; Chong, L.; Lee, M.; Lee, T.; Duan, Y.; Wang, W. Calculating Structures and Free Energies of Complex Molecules: Combining Molecular Mechanics and Continuum Models Acc. Chem. Res. 2000, 33, 889-897
-
(2000)
Acc. Chem. Res.
, vol.33
, pp. 889-897
-
-
Kollman, P.A.1
Massova, I.2
Reyes, C.3
Kuhn, B.4
Huo, S.5
Chong, L.6
Lee, M.7
Lee, T.8
Duan, Y.9
Wang, W.10
-
25
-
-
0043245780
-
Insights into Protein-Protein Binding by Binding Free Energy Calculation and Free Energy Decomposition for the Ras-Raf and Ras-RalGDS Complexes
-
Gohlke, H.; Kiel, C.; Case, D. A. Insights into Protein-Protein Binding by Binding Free Energy Calculation and Free Energy Decomposition for the Ras-Raf and Ras-RalGDS Complexes J. Mol. Biol. 2003, 330, 891-913
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 891-913
-
-
Gohlke, H.1
Kiel, C.2
Case, D.A.3
-
26
-
-
84862069761
-
QM/MM Study on the Catalytic Mechanism of Heme-Containing Aliphatic Aldoxime Dehydratase
-
Pan, X.-L.; Cui, F.-C.; Liu, W.; Liu, J.-Y. QM/MM Study on the Catalytic Mechanism of Heme-Containing Aliphatic Aldoxime Dehydratase J. Phys. Chem. B 2012, 116, 5689-5693
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 5689-5693
-
-
Pan, X.-L.1
Cui, F.-C.2
Liu, W.3
Liu, J.-Y.4
-
27
-
-
81555209019
-
Insights into the phosphoryl transfer mechanism of cyclin-dependent protein kinases from ab initio QM/MM free-energy studies
-
Smith, G. K.; Ke, Z.; Guo, H.; Hengge, A. C. Insights into the phosphoryl transfer mechanism of cyclin-dependent protein kinases from ab initio QM/MM free-energy studies J. Phys. Chem. B 2011, 115, 13713-13722
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 13713-13722
-
-
Smith, G.K.1
Ke, Z.2
Guo, H.3
Hengge, A.C.4
-
28
-
-
84867386125
-
Exploring the Multidimensional Free Energy Surface of Phosphoester Hydrolysis with Constrained QM/MM Dynamics
-
Li, W.; Rudack, T.; Gerwert, K.; Gräter, F.; Schlitter, J. R. Exploring the Multidimensional Free Energy Surface of Phosphoester Hydrolysis with Constrained QM/MM Dynamics J. Chem. Theory Comput. 2012, 8, 3596-3604
-
(2012)
J. Chem. Theory Comput.
, vol.8
, pp. 3596-3604
-
-
Li, W.1
Rudack, T.2
Gerwert, K.3
Gräter, F.4
Schlitter, J.R.5
-
29
-
-
84892698045
-
Software for molecular modeling from sequence through lead optimization
-
version 1.3; Tripos International: St. Louis, MO.
-
SYBYL-X, version 1.3; software for molecular modeling from sequence through lead optimization; Tripos International: St. Louis, MO, 2011.
-
(2011)
SYBYL-X
-
-
-
30
-
-
84877602907
-
Screening and Structural Analysis of Flavones Inhibiting Tankyrases
-
Narwal, M.; Haikarainen, T.; Fallarero, A.; Vuorela, P. M.; Lehtiö, L. Screening and Structural Analysis of Flavones Inhibiting Tankyrases J. Med. Chem. 2013, 56, 3507-3517
-
(2013)
J. Med. Chem.
, vol.56
, pp. 3507-3517
-
-
Narwal, M.1
Haikarainen, T.2
Fallarero, A.3
Vuorela, P.M.4
Lehtiö, L.5
-
31
-
-
84864713987
-
Inhibition of Protein Kinase CK2 by Flavonoids and Tyrphostins. A Structural Insight
-
Lolli, G.; Cozza, G.; Mazzorana, M.; Tibaldi, E.; Cesaro, L.; Donella-Deana, A.; Meggio, F.; Venerando, A.; Franchin, C.; Sarno, S. Inhibition of Protein Kinase CK2 by Flavonoids and Tyrphostins. A Structural Insight Biochemistry 2012, 51, 6097-6107
-
(2012)
Biochemistry
, vol.51
, pp. 6097-6107
-
-
Lolli, G.1
Cozza, G.2
Mazzorana, M.3
Tibaldi, E.4
Cesaro, L.5
Donella-Deana, A.6
Meggio, F.7
Venerando, A.8
Franchin, C.9
Sarno, S.10
-
32
-
-
0037168426
-
Anaerobic Enzyme-Substrate Structures Provide Insight into the Reaction Mechanism of the Copper-Dependent Quercetin 2,3-Dioxygenase
-
Steiner, R. A.; Kalk, K. H.; Dijkstra, B. W. Anaerobic Enzyme-Substrate Structures Provide Insight Into the Reaction Mechanism of the Copper-Dependent Quercetin 2,3-Dioxygenase Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 16625-16630
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16625-16630
-
-
Steiner, R.A.1
Kalk, K.H.2
Dijkstra, B.W.3
-
33
-
-
34548387498
-
Ensemble Refinement of Protein Crystal Structures: Validation and Application
-
Levin, E. J.; Kondrashov, D. A.; Wesenberg, G. E.; Phillips, G. N. Ensemble Refinement of Protein Crystal Structures: Validation and Application Structure 2007, 15, 1040-1052
-
(2007)
Structure
, vol.15
, pp. 1040-1052
-
-
Levin, E.J.1
Kondrashov, D.A.2
Wesenberg, G.E.3
Phillips, G.N.4
-
34
-
-
70450206724
-
-
revision C.1; Gaussian, Inc. Wallingford, CT.
-
Frisch, M. E.; Trucks, G.; Schlegel, H. B.; Scuseria, G.; Robb, M.; Cheeseman, J.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. E.; Gaussian 09, revision C.1; Gaussian, Inc.: Wallingford, CT, 2009.
-
(2009)
Gaussian 09
-
-
Frisch, M.E.1
Trucks, G.2
Schlegel, H.B.3
Scuseria, G.4
Robb, M.5
Cheeseman, J.6
Scalmani, G.7
Barone, V.8
Mennucci, B.9
Petersson, G.E.10
-
35
-
-
44649191697
-
Crystal Structures of Human 108V and 108M Catechol O -Methyltransferase
-
Rutherford, K.; Le Trong, I.; Stenkamp, R.; Parson, W. Crystal Structures of Human 108V and 108M Catechol O -Methyltransferase J. Mol. Biol. 2008, 380, 120-130
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 120-130
-
-
Rutherford, K.1
Le Trong, I.2
Stenkamp, R.3
Parson, W.4
-
36
-
-
78049265751
-
-
University of California: San Francisco, CA.
-
Case, D.; Darden, T.; Cheatham, T., III; Simmerling, C.; Wang, J.; Duke, R.; Luo, R.; Walker, R.; Zhang, W.; Merz, K.; AMBER 11; University of California: San Francisco, CA, 2010.
-
(2010)
AMBER 11
-
-
Case, D.1
Darden, T.2
Cheatham III, T.3
Simmerling, C.4
Wang, J.5
Duke, R.6
Luo, R.7
Walker, R.8
Zhang, W.9
Merz, K.10
-
37
-
-
0004016501
-
Comparison of Simple Potential Functions for Simulating Liquid Water
-
Jorgensen, W. L.; Chandrasekhar, J.; Madura, J. D.; Impey, R. W.; Klein, M. L. Comparison of Simple Potential Functions for Simulating Liquid Water J. Chem. Phys. 1983, 79, 926
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
38
-
-
23444454552
-
The Amber Biomolecular Simulation Programs
-
Case, D. A.; Cheatham, T. E.; Darden, T.; Gohlke, H.; Luo, R.; Merz, K. M.; Onufriev, A.; Simmerling, C.; Wang, B.; Woods, R. J. The Amber Biomolecular Simulation Programs J. Comput. Chem. 2005, 26, 1668-1688
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1668-1688
-
-
Case, D.A.1
Cheatham, T.E.2
Darden, T.3
Gohlke, H.4
Luo, R.5
Merz, K.M.6
Onufriev, A.7
Simmerling, C.8
Wang, B.9
Woods, R.J.10
-
39
-
-
2942532422
-
Development and Testing of a General Amber Force Field
-
Wang, J.; Wolf, R. M.; Caldwell, J. W.; Kollman, P. A.; Case, D. A. Development and Testing of a General Amber Force Field J. Comput. Chem. 2004, 25, 1157-1174
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1157-1174
-
-
Wang, J.1
Wolf, R.M.2
Caldwell, J.W.3
Kollman, P.A.4
Case, D.A.5
-
40
-
-
33748518255
-
Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters
-
Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.; Simmerling, C. Comparison of Multiple Amber Force Fields and Development of Improved Protein Backbone Parameters Proteins 2006, 65, 712-725
-
(2006)
Proteins
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
41
-
-
0028210328
-
Crystal Structure of Catechol O-Methyltransferase
-
Vidgren, J.; Svensson, L. A.; Liljas, A. Crystal Structure of Catechol O-Methyltransferase Nature 1994, 368, 354-358
-
(1994)
Nature
, vol.368
, pp. 354-358
-
-
Vidgren, J.1
Svensson, L.A.2
Liljas, A.3
-
42
-
-
0032060840
-
A Semiempirical Study on Inhibition of Catechol O-Methyltransferase by Substituted Catechols
-
Ovaska, M.; Yliniemelä, A. A Semiempirical Study on Inhibition of Catechol O-Methyltransferase by Substituted Catechols J. Comput.-Aided Mol. Des. 1998, 12, 301-307
-
(1998)
J. Comput.-Aided Mol. Des.
, vol.12
, pp. 301-307
-
-
Ovaska, M.1
Yliniemelä, A.2
-
43
-
-
33846823909
-
Particle mesh Ewald: An N log (N) Method for Ewald Sums in Large Systems
-
Darden, T.; York, D.; Pedersen, L. Particle mesh Ewald: An N log (N) Method for Ewald Sums in Large Systems J. Chem. Phys. 1993, 98, 10089
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
44
-
-
33646940952
-
Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n -Alkanes
-
Ryckaert, J.-P.; Ciccotti, G.; Berendsen, H. J. Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n -Alkanes J. Comput. Phys. 1977, 23, 327-341
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.3
-
45
-
-
0035913537
-
Extending the Applicability of the Nonlinear Poisson-Boltzmann Equation: Multiple Dielectric Constants and Multivalent Ions
-
Rocchia, W.; Alexov, E.; Honig, B. Extending the Applicability of the Nonlinear Poisson-Boltzmann Equation: Multiple Dielectric Constants and Multivalent Ions J. Phys. Chem. B 2001, 105, 6507-6514
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 6507-6514
-
-
Rocchia, W.1
Alexov, E.2
Honig, B.3
-
46
-
-
0000940292
-
On Finding Stationary States on Large-Molecule Potential Energy Surfaces
-
Nguyen, D. T.; Case, D. A. On Finding Stationary States on Large-Molecule Potential Energy Surfaces J. Phys. Chem. 1985, 89, 4020-4026
-
(1985)
J. Phys. Chem.
, vol.89
, pp. 4020-4026
-
-
Nguyen, D.T.1
Case, D.A.2
-
47
-
-
1842479952
-
Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model
-
Onufriev, A.; Bashford, D.; Case, D. A. Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model Proteins 2004, 55, 383-394
-
(2004)
Proteins
, vol.55
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
48
-
-
0029873183
-
Ground State Conformations and Entropic and Enthalpic Factors in the Efficiency of Intramolecular and Enzymatic Reactions. 1. Cyclic Anhydride Formation by Substituted Glutarates, Succinate, and 3, 6-Endoxo-Δ4- Tetrahydrophthalate Monophenyl Esters
-
Lightstone, F. C.; Bruice, T. C. Ground State Conformations and Entropic and Enthalpic Factors in the Efficiency of Intramolecular and Enzymatic Reactions. 1. Cyclic Anhydride Formation by Substituted Glutarates, Succinate, and 3, 6-Endoxo-Δ4-Tetrahydrophthalate Monophenyl Esters J. Am. Chem. Soc. 1996, 118, 2595-2605
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 2595-2605
-
-
Lightstone, F.C.1
Bruice, T.C.2
-
49
-
-
84870307882
-
Catalytic Mechanism and Product Specificity of Oxidosqualene- Lanosterol Cyclase: A QM/MM Study
-
Tian, B.-X.; Eriksson, L. A. Catalytic Mechanism and Product Specificity of Oxidosqualene- Lanosterol Cyclase: A QM/MM Study J. Phys. Chem. B 2012, 116, 13857-13862
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 13857-13862
-
-
Tian, B.-X.1
Eriksson, L.A.2
-
50
-
-
84876463514
-
New Insights on the Molecular Recognition of Imidacloprid with Aplysia Californica AChBP: A Computational Study
-
Cerón-Carrasco, J. P.; Jacquemin, D.; Graton, Jr. m.; Thany, S.; Le Questel, J.-Y. New Insights on the Molecular Recognition of Imidacloprid with Aplysia Californica AChBP: A Computational Study J. Phys. Chem. B 2013, 117, 3944-3953
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 3944-3953
-
-
Cerón-Carrasco, J.P.1
Jacquemin, D.2
Graton Jr., M.3
Thany, S.4
Le Questel, J.-Y.5
-
51
-
-
84876719258
-
Combined Quantum Mechanics/Molecular Mechanics (QM/MM) Methods in Computational Enzymology
-
van der Kamp, M. W.; Mulholland, A. J. Combined Quantum Mechanics/Molecular Mechanics (QM/MM) Methods in Computational Enzymology Biochemistry 2013, 52, 2708-2728
-
(2013)
Biochemistry
, vol.52
, pp. 2708-2728
-
-
Van Der Kamp, M.W.1
Mulholland, A.J.2
-
52
-
-
77951144125
-
Case studies of ONIOM (DFT: DFTB) and ONIOM (DFT: DFTB: MM) for Enzymes and Enzyme Mimics
-
Lundberg, M.; Sasakura, Y.; Zheng, G.; Morokuma, K. Case studies of ONIOM (DFT: DFTB) and ONIOM (DFT: DFTB: MM) for Enzymes and Enzyme Mimics J. Chem. Theory Comput. 2010, 6, 1413-1427
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1413-1427
-
-
Lundberg, M.1
Sasakura, Y.2
Zheng, G.3
Morokuma, K.4
|