-
1
-
-
35648930913
-
The role of transcription factories in large-scale structure and dynamics of interphase chromatin
-
PMID:17950637
-
Sexton T, Umlauf D, Kurukuti S, Fraser P. The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin Cell Dev Biol 2007; 18:691-7; PMID:17950637; http://dx.doi.org/10.1016/j.semcdb.2007.08.008
-
(2007)
Semin Cell Dev Biol
, vol.18
, pp. 691-697
-
-
Sexton, T.1
Umlauf, D.2
Kurukuti, S.3
Fraser, P.4
-
2
-
-
35848952522
-
Gene regulation through nuclear organization
-
PMID:17984967
-
Sexton T, Schober H, Fraser P, Gasser SM. Gene regulation through nuclear organization. Nat Struct Mol Biol 2007; 14:1049-55; PMID:17984967; http://dx.doi.org/10.1038/nsmb1324
-
(2007)
Nat Struct Mol Biol
, vol.14
, pp. 1049-1055
-
-
Sexton, T.1
Schober, H.2
Fraser, P.3
Gasser, S.M.4
-
3
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
PMID:15361872
-
Osborne CS, Chakalova L, Brown KE, Carter D, Horton A, Debrand E, Goyenechea B, Mitchell JA, Lopes S, Reik W, et al. Active genes dynamically colocalize to shared sites of ongoing transcription. Nat Genet 2004; 36:1065-71; PMID:15361872; http://dx.doi.org/10.1038/ng1423
-
(2004)
Nat Genet
, vol.36
, pp. 1065-1071
-
-
Osborne, C.S.1
Chakalova, L.2
Brown, K.E.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.A.8
Lopes, S.9
Reik, W.10
-
4
-
-
70349326007
-
Genomic interactions: Chromatin loops and gene meeting points in transcriptional regulation
-
PMID:19559093
-
Sexton T, Bantignies F, Cavalli G. Genomic interactions: chromatin loops and gene meeting points in transcriptional regulation. Semin Cell Dev Biol 2009; 20:849-55; PMID:19559093; http://dx.doi.org/10.1016/j.semcdb.2009.06.004
-
(2009)
Semin Cell Dev Biol
, vol.20
, pp. 849-855
-
-
Sexton, T.1
Bantignies, F.2
Cavalli, G.3
-
5
-
-
84866754239
-
Oncogenic transcription factors as master regulators of chromatin topology: A new role for ERG in prostate cancer
-
PMID:22918253
-
Elemento O, Rubin MA, Rickman DS. Oncogenic transcription factors as master regulators of chromatin topology: a new role for ERG in prostate cancer. Cell Cycle 2012; 11:3380-3; PMID:22918253; http://dx.doi.org/10.4161/cc.21401
-
(2012)
Cell Cycle
, vol.11
, pp. 3380-3383
-
-
Elemento, O.1
Rubin, M.A.2
Rickman, D.S.3
-
6
-
-
84864025407
-
Chromatin binding by the androgen receptor in prostate cancer
-
PMID:21989426
-
Itkonen H, Mills IG. Chromatin binding by the androgen receptor in prostate cancer. Mol Cell Endocrinol 2012; 360:44-51; PMID:21989426; http://dx.doi.org/10.1016/j.mce.2011.09.037
-
(2012)
Mol Cell Endocrinol
, vol.360
, pp. 44-51
-
-
Itkonen, H.1
Mills, I.G.2
-
7
-
-
84892528539
-
Estrogen receptor-mediated long-range chromatin interactions and transcription in breast cancer
-
PMID:24071518
-
Liu MH, Cheung E. Estrogen receptor-mediated long-range chromatin interactions and transcription in breast cancer. Mol Cell Endocrinol 2013; PMID:24071518
-
(2013)
Mol Cell Endocrinol
-
-
Liu, M.H.1
Cheung, E.2
-
8
-
-
77956029272
-
Estrogen receptor action in three dimensions-looping the loop
-
PMID:20156333
-
Theodorou V, Carroll JS. Estrogen receptor action in three dimensions-looping the loop. Breast Cancer Res 2010; 12:303; PMID:20156333; http://dx.doi.org/10.1186/bcr2470
-
(2010)
Breast Cancer Res
, vol.12
, pp. 303
-
-
Theodorou, V.1
Carroll, J.S.2
-
9
-
-
84859992161
-
The JAK-STAT pathway at twenty
-
PMID:22520844
-
Stark GR, Darnell JE Jr. The JAK-STAT pathway at twenty. Immunity 2012; 36:503-14; PMID:22520844; http://dx.doi.org/10.1016/j.immuni.2012.03.013
-
(2012)
Immunity
, vol.36
, pp. 503-514
-
-
Stark, G.R.1
Darnell Jr., J.E.2
-
10
-
-
84872065897
-
JAKs and STATs in immunity, immunodeficiency, and cancer
-
PMID:23301733
-
O'Shea JJ, Holland SM, Staudt LM. JAKs and STATs in immunity, immunodeficiency, and cancer. N Engl J Med 2013; 368:161-70; PMID:23301733; http://dx.doi.org/10.1056/NEJMra1202117
-
(2013)
N Engl J Med
, vol.368
, pp. 161-170
-
-
O'Shea, J.J.1
Holland, S.M.2
Staudt, L.M.3
-
11
-
-
0035823547
-
Functional importance of Stat3 tetramerization in activation of the alpha 2-macroglobulin gene
-
PMID:11438543
-
Zhang X, Darnell JE Jr. Functional importance of Stat3 tetramerization in activation of the alpha 2-macroglobulin gene. J Biol Chem 2001; 276:33576-81; PMID:11438543; http://dx.doi.org/10.1074/jbc.M104978200
-
(2001)
J Biol Chem
, vol.276
, pp. 33576-33581
-
-
Zhang, X.1
Darnell Jr., J.E.2
-
12
-
-
0032512661
-
Structure of the amino-terminal protein interaction domain of STAT-4
-
PMID:9461439
-
Vinkemeier U, Moarefi I, Darnell JE Jr., Kuriyan J. Structure of the amino-terminal protein interaction domain of STAT-4. Science 1998; 279:1048-52; PMID:9461439; http://dx.doi.org/10.1126/science.279.5353.1048
-
(1998)
Science
, vol.279
, pp. 1048-1052
-
-
Vinkemeier, U.1
Moarefi, I.2
Darnell Jr., J.E.3
Kuriyan, J.4
-
13
-
-
0029903770
-
DNA binding of in vitro activated Stat1 alpha, Stat1 beta and truncated Stat1: Interaction between NH2-terminal domains stabilizes binding of two dimers to tandem DNA sites
-
PMID:8896455
-
Vinkemeier U, Cohen SL, Moarefi I, Chait BT, Kuriyan J, Darnell JE Jr. DNA binding of in vitro activated Stat1 alpha, Stat1 beta and truncated Stat1: interaction between NH2-terminal domains stabilizes binding of two dimers to tandem DNA sites. EMBO J 1996; 15:5616-26; PMID:8896455
-
(1996)
EMBO J
, vol.15
, pp. 5616-5626
-
-
Vinkemeier, U.1
Cohen, S.L.2
Moarefi, I.3
Chait, B.T.4
Kuriyan, J.5
Darnell Jr., J.E.6
-
14
-
-
0033835830
-
Role of the Stat4 N domain in receptor proximal tyrosine phosphorylation
-
PMID:10982828
-
Murphy TL, Geissal ED, Farrar JD, Murphy KM. Role of the Stat4 N domain in receptor proximal tyrosine phosphorylation. Mol Cell Biol 2000; 20:7121-31; PMID:10982828; http://dx.doi.org/10.1128/MCB.20.19.7121-7131.2000
-
(2000)
Mol Cell Biol
, vol.20
, pp. 7121-7131
-
-
Murphy, T.L.1
Geissal, E.D.2
Farrar, J.D.3
Murphy, K.M.4
-
15
-
-
0033019051
-
The significance of tetramerization in promoter recruitment by Stat5
-
PMID:10022878
-
John S, Vinkemeier U, Soldaini E, Darnell JE Jr., Leonard WJ. The significance of tetramerization in promoter recruitment by Stat5. Mol Cell Biol 1999; 19:1910-8; PMID:10022878
-
(1999)
Mol Cell Biol
, vol.19
, pp. 1910-1918
-
-
John, S.1
Vinkemeier, U.2
Soldaini, E.3
Darnell Jr., J.E.4
Leonard, W.J.5
-
16
-
-
84885845728
-
Alternative ways of modulating JAK-STAT pathway: Looking beyond phosphorylation
-
PMID:24058784
-
Timofeeva OA, Tarasova NI. Alternative ways of modulating JAK-STAT pathway: Looking beyond phosphorylation. JAKSTAT 2012; 1:274-84; PMID:24058784; http://dx.doi.org/10.4161/jkst.22313
-
(2012)
JAKSTAT
, vol.1
, pp. 274-284
-
-
Timofeeva, O.A.1
Tarasova, N.I.2
-
17
-
-
84859968982
-
Critical Role of STAT5 transcription factor tetramerization for cytokine responses and normal immune function
-
PMID:22520852
-
Lin JX, Li P, Liu D, Jin HT, He J, Ata Ur Rasheed M, Rochman Y, Wang L, Cui K, Liu C, et al. Critical Role of STAT5 transcription factor tetramerization for cytokine responses and normal immune function. Immunity 2012; 36:586-99; PMID:22520852; http://dx.doi.org/10.1016/j.immuni.2012.02.017
-
(2012)
Immunity
, vol.36
, pp. 586-599
-
-
Lin, J.X.1
Li, P.2
Liu, D.3
Jin, H.T.4
He, J.5
Ata Ur Rasheed, M.6
Rochman, Y.7
Wang, L.8
Cui, K.9
Liu, C.10
-
18
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
PMID:18555785
-
Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, et al. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 2008; 133:1106-17; PMID:18555785; http://dx.doi.org/10.1016/j.cell.2008.04.043
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
-
19
-
-
55749094855
-
An integrated software system for analyzing ChIP-chip and ChIP-seq data
-
PMID:18978777
-
Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. An integrated software system for analyzing ChIP-chip and ChIP-seq data. Nat Biotechnol 2008; 26:1293-300; PMID:18978777; http://dx.doi.org/10.1038/nbt.1505
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1293-1300
-
-
Ji, H.1
Jiang, H.2
Ma, W.3
Johnson, D.S.4
Myers, R.M.5
Wong, W.H.6
-
20
-
-
77954065271
-
I-TASSER: A unified platform for automated protein structure and function prediction
-
PMID:20360767
-
Roy A, Kucukural A, Zhang Y. I-TASSER: a unified platform for automated protein structure and function prediction. Nat Protoc 2010; 5:725-38; PMID:20360767; http://dx.doi.org/10.1038/nprot.2010.5
-
(2010)
Nat Protoc
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
21
-
-
84868295514
-
Automated and fast building of three-dimensional RNA structures
-
PMID:23071898
-
Zhao Y, Huang Y, Gong Z, Wang Y, Man J, Xiao Y. Automated and fast building of three-dimensional RNA structures. Sci Rep 2012; 2:734; PMID:23071898; http://dx.doi.org/10.1038/srep00734
-
(2012)
Sci Rep
, vol.2
, pp. 734
-
-
Zhao, Y.1
Huang, Y.2
Gong, Z.3
Wang, Y.4
Man, J.5
Xiao, Y.6
-
22
-
-
84878654457
-
A novel protocol for three-dimensional structure prediction of RNA-protein complexes
-
PMID:23712416
-
Huang Y, Liu S, Guo D, Li L, Xiao Y. A novel protocol for three-dimensional structure prediction of RNA-protein complexes. Sci Rep 2013; 3:1887; PMID:23712416; http://dx.doi.org/10.1038/srep01887
-
(2013)
Sci Rep
, vol.3
, pp. 1887
-
-
Huang, Y.1
Liu, S.2
Guo, D.3
Li, L.4
Xiao, Y.5
-
23
-
-
0032499801
-
Three-dimensional structure of the Stat3beta homodimer bound to DNA
-
PMID:9671298
-
Becker S, Groner B, Müller CW. Three-dimensional structure of the Stat3beta homodimer bound to DNA. Nature 1998; 394:145-51; PMID:9671298; http://dx.doi.org/10.1038/28101
-
(1998)
Nature
, vol.394
, pp. 145-151
-
-
Becker, S.1
Groner, B.2
Müller, C.W.3
-
24
-
-
33748209244
-
IL-6 signaling via the STAT3/SOCS3 pathway: Functional analysis of the conserved STAT3 N-domain
-
PMID:16718380
-
rd, Schlessinger K, Murray PJ, Levy DE, Watowich SS. IL-6 signaling via the STAT3/SOCS3 pathway: functional analysis of the conserved STAT3 N-domain. Mol Cell Biochem 2006; 288:179-89; PMID:16718380; http://dx.doi.org/10.1007/s11010-006-9137-3
-
(2006)
Mol Cell Biochem
, vol.288
, pp. 179-189
-
-
Zhang, L.1
Badgwell, D.B.2
Bevers III, J.J.3
Schlessinger, K.4
Murray, P.J.5
Levy, D.E.6
Watowich, S.S.7
-
25
-
-
17644397256
-
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
-
PMID:15696541
-
Arnosti DN, Kulkarni MM. Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards? J Cell Biochem 2005; 94:890-8; PMID:15696541; http://dx.doi.org/10.1002/jcb.20352
-
(2005)
J Cell Biochem
, vol.94
, pp. 890-898
-
-
Arnosti, D.N.1
Kulkarni, M.M.2
-
26
-
-
84888015137
-
Super-enhancers in the control of cell identity and disease
-
PMID:24119843
-
Hnisz D, Abraham BJ, Lee TI, Lau A, Saint-André V, Sigova AA, Hoke HA, Young RA. Super-enhancers in the control of cell identity and disease. Cell 2013; 155:934-47; PMID:24119843; http://dx.doi.org/10.1016/j.cell.2013.09.053
-
(2013)
Cell
, vol.155
, pp. 934-947
-
-
Hnisz, D.1
Abraham, B.J.2
Lee, T.I.3
Lau, A.4
Saint-André, V.5
Sigova, A.A.6
Hoke, H.A.7
Young, R.A.8
-
27
-
-
84874587482
-
Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation
-
PMID:23212947
-
Hakim O, Sung M-H, Nakayamada S, Voss TC, Baek S, Hager GL. Spatial congregation of STAT binding directs selective nuclear architecture during T-cell functional differentiation. Genome Res 2013; 23:462-72; PMID:23212947; http://dx.doi.org/10.1101/gr.147652.112
-
(2013)
Genome Res
, vol.23
, pp. 462-472
-
-
Hakim, O.1
Sung, M.-H.2
Nakayamada, S.3
Voss, T.C.4
Baek, S.5
Hager, G.L.6
-
28
-
-
84860014863
-
Mechanisms of unphosphorylated STAT3 transcription factor binding to DNA
-
PMID:22378781
-
Timofeeva OA, Chasovskikh S, Lonskaya I, Tarasova NI, Khavrutskii L, Tarasov SG, Zhang X, Korostyshevskiy VR, Cheema A, Zhang L, et al. Mechanisms of unphosphorylated STAT3 transcription factor binding to DNA. J Biol Chem 2012; 287:14192-200; PMID:22378781; http://dx.doi.org/10.1074/jbc.M111.323899
-
(2012)
J Biol Chem
, vol.287
, pp. 14192-14200
-
-
Timofeeva, O.A.1
Chasovskikh, S.2
Lonskaya, I.3
Tarasova, N.I.4
Khavrutskii, L.5
Tarasov, S.G.6
Zhang, X.7
Korostyshevskiy, V.R.8
Cheema, A.9
Zhang, L.10
-
29
-
-
0034254726
-
How Stat1 mediates constitutive gene expression: A complex of unphosphorylated Stat1 and IRF1 supports transcription of the LMP2 gene
-
PMID:10921891
-
Chatterjee-Kishore M, Wright KL, Ting JP, Stark GR. How Stat1 mediates constitutive gene expression: a complex of unphosphorylated Stat1 and IRF1 supports transcription of the LMP2 gene. EMBO J 2000; 19:4111-22; PMID:10921891; http://dx.doi.org/10.1093/emboj/19.15.4111
-
(2000)
EMBO J
, vol.19
, pp. 4111-4122
-
-
Chatterjee-Kishore, M.1
Wright, K.L.2
Ting, J.P.3
Stark, G.R.4
-
30
-
-
84872834298
-
STAT3 suppresses transcription of proapoptotic genes in cancer cells with the involvement of its N-terminal domain
-
PMID:23288901
-
Timofeeva OA, Tarasova NI, Zhang X, Chasovskikh S, Cheema AK, Wang H, Brown ML, Dritschilo A. STAT3 suppresses transcription of proapoptotic genes in cancer cells with the involvement of its N-terminal domain. Proc Natl Acad Sci U S A 2013; 110:1267-72; PMID:23288901; http://dx.doi.org/10.1073/pnas.1211805110
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1267-1272
-
-
Timofeeva, O.A.1
Tarasova, N.I.2
Zhang, X.3
Chasovskikh, S.4
Cheema, A.K.5
Wang, H.6
Brown, M.L.7
Dritschilo, A.8
-
31
-
-
33748308794
-
JAK signaling globally counteracts heterochromatic gene silencing
-
PMID:16892059
-
Shi S, Calhoun HC, Xia F, Li J, Le L, Li WX. JAK signaling globally counteracts heterochromatic gene silencing. Nat Genet 2006; 38:1071-6; PMID:16892059; http://dx.doi.org/10.1038/ng1860
-
(2006)
Nat Genet
, vol.38
, pp. 1071-1076
-
-
Shi, S.1
Calhoun, H.C.2
Xia, F.3
Li, J.4
Le, L.5
Li, W.X.6
-
32
-
-
43149084600
-
Drosophila STAT is required for directly maintaining HP1 localization and heterochromatin stability
-
PMID:18344984
-
Shi S, Larson K, Guo D, Lim SJ, Dutta P, Yan SJ, Li WX. Drosophila STAT is required for directly maintaining HP1 localization and heterochromatin stability. Nat Cell Biol 2008; 10:489-96; PMID:18344984; http://dx.doi.org/10.1038/ncb1713
-
(2008)
Nat Cell Biol
, vol.10
, pp. 489-496
-
-
Shi, S.1
Larson, K.2
Guo, D.3
Lim, S.J.4
Dutta, P.5
Yan, S.J.6
Li, W.X.7
-
33
-
-
84879292795
-
Unphosphorylated STAT5A stabilizes heterochromatin and suppresses tumor growth
-
PMID:23733954
-
Hu X, Dutta P, Tsurumi A, Li J, Wang J, Land H, Li WX. Unphosphorylated STAT5A stabilizes heterochromatin and suppresses tumor growth. Proc Natl Acad Sci U S A 2013; 110:10213-8; PMID:23733954; http://dx.doi.org/10.1073/pnas.1221243110
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 10213-10218
-
-
Hu, X.1
Dutta, P.2
Tsurumi, A.3
Li, J.4
Wang, J.5
Land, H.6
Li, W.X.7
-
34
-
-
38649086742
-
Rationally designed inhibitors identify STAT3 N-domain as a promising anticancer drug target
-
PMID:18154267
-
Timofeeva OA, Gaponenko V, Lockett SJ, Tarasov SG, Jiang S, Michejda CJ, Perantoni AO, Tarasova NI. Rationally designed inhibitors identify STAT3 N-domain as a promising anticancer drug target. ACS Chem Biol 2007; 2:799-809; PMID:18154267; http://dx.doi.org/10.1021/cb700186x
-
(2007)
ACS Chem Biol
, vol.2
, pp. 799-809
-
-
Timofeeva, O.A.1
Gaponenko, V.2
Lockett, S.J.3
Tarasov, S.G.4
Jiang, S.5
Michejda, C.J.6
Perantoni, A.O.7
Tarasova, N.I.8
|