-
1
-
-
84877928797
-
Origins of new genes and evolution of their novel functions
-
Ding Y, Zhou Q, Wang W. Origins of new genes and evolution of their novel functions. Ann Rev Ecol Evol 2012, 43:345-363.
-
(2012)
Ann Rev Ecol Evol
, vol.43
, pp. 345-363
-
-
Ding, Y.1
Zhou, Q.2
Wang, W.3
-
2
-
-
0036898759
-
Prokaryotic evolution in light of gene transfer
-
10.1093/oxfordjournals.molbev.a004046, 12446813
-
Gogarten JP, Doolittle WF, Lawrence JG. Prokaryotic evolution in light of gene transfer. Mol Biol Evol 2002, 19(12):2226-2238. 10.1093/oxfordjournals.molbev.a004046, 12446813.
-
(2002)
Mol Biol Evol
, vol.19
, Issue.12
, pp. 2226-2238
-
-
Gogarten, J.P.1
Doolittle, W.F.2
Lawrence, J.G.3
-
3
-
-
67650915748
-
Gene duplication and evolutionary novelty in plants
-
10.1111/j.1469-8137.2009.02923.x, 19555435
-
Flagel LE, Wendel JF. Gene duplication and evolutionary novelty in plants. New Phytol 2009, 183(3):557-564. 10.1111/j.1469-8137.2009.02923.x, 19555435.
-
(2009)
New Phytol
, vol.183
, Issue.3
, pp. 557-564
-
-
Flagel, L.E.1
Wendel, J.F.2
-
4
-
-
84869130037
-
Gene duplication as a mechanism of genomic adaptation to a changing environment
-
Kondrashov FA. Gene duplication as a mechanism of genomic adaptation to a changing environment. P Roy Soc B-Biol Sci 2012, 279(1749):5048-5057.
-
(2012)
P Roy Soc B-Biol Sci
, vol.279
, Issue.1749
, pp. 5048-5057
-
-
Kondrashov, F.A.1
-
5
-
-
47649104484
-
Horizontal gene transfer in eukaryotic evolution
-
10.1038/nrg2386, 18591983
-
Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet 2008, 9(8):605-618. 10.1038/nrg2386, 18591983.
-
(2008)
Nat Rev Genet
, vol.9
, Issue.8
, pp. 605-618
-
-
Keeling, P.J.1
Palmer, J.D.2
-
6
-
-
84870200615
-
Evolutionary Implications of Horizontal Gene Transfer
-
10.1146/annurev-genet-110711-155529, 22934638
-
Syvanen M. Evolutionary Implications of Horizontal Gene Transfer. Annu Rev Genet 2012, 46:341-358. 10.1146/annurev-genet-110711-155529, 22934638.
-
(2012)
Annu Rev Genet
, vol.46
, pp. 341-358
-
-
Syvanen, M.1
-
7
-
-
84879460700
-
Hosts, parasites, and horizontal gene transfer
-
10.1016/j.pt.2013.05.001, 23759418
-
Wijayawardena BK, Minchella DJ, Dewoody JA. Hosts, parasites, and horizontal gene transfer. Trends Parasitol 2013, 29(7):329-338. 10.1016/j.pt.2013.05.001, 23759418.
-
(2013)
Trends Parasitol
, vol.29
, Issue.7
, pp. 329-338
-
-
Wijayawardena, B.K.1
Minchella, D.J.2
Dewoody, J.A.3
-
8
-
-
84870723336
-
Biochemical diversification through foreign gene expression in Bdelloid rotifers
-
10.1371/journal.pgen.1003035, 3499245, 23166508
-
Boschetti C, Carr A, Crisp A, Eyres I, Wang-Koh Y, Lubzens E, Barraclough TG, Micklem G, Tunnacliffe A. Biochemical diversification through foreign gene expression in Bdelloid rotifers. PLoS Genet 2012, 8(11):e1003035. 10.1371/journal.pgen.1003035, 3499245, 23166508.
-
(2012)
PLoS Genet
, vol.8
, Issue.11
-
-
Boschetti, C.1
Carr, A.2
Crisp, A.3
Eyres, I.4
Wang-Koh, Y.5
Lubzens, E.6
Barraclough, T.G.7
Micklem, G.8
Tunnacliffe, A.9
-
9
-
-
45849089569
-
Massive horizontal gene transfer in bdelloid rotifers
-
10.1126/science.1156407, 18511688
-
Gladyshev EA, Meselson M, Arkhipova IR. Massive horizontal gene transfer in bdelloid rotifers. Science 2008, 320(5880):1210-1213. 10.1126/science.1156407, 18511688.
-
(2008)
Science
, vol.320
, Issue.5880
, pp. 1210-1213
-
-
Gladyshev, E.A.1
Meselson, M.2
Arkhipova, I.R.3
-
10
-
-
84861987330
-
Ancient gene transfer from algae to animals: mechanisms and evolutionary significance
-
10.1186/1471-2148-12-83, 3494510, 22690978
-
Ni T, Yue J, Sun G, Zou Y, Wen J, Huang J. Ancient gene transfer from algae to animals: mechanisms and evolutionary significance. BMC Evol Biol 2012, 12(1):83. 10.1186/1471-2148-12-83, 3494510, 22690978.
-
(2012)
BMC Evol Biol
, vol.12
, Issue.1
, pp. 83
-
-
Ni, T.1
Yue, J.2
Sun, G.3
Zou, Y.4
Wen, J.5
Huang, J.6
-
11
-
-
52249104410
-
Horizontal gene transfer and the evolution of cnidarian stinging cells
-
10.1016/j.cub.2008.07.031, 18812079
-
Denker E, Bapteste E, Le Guyader H, Manuel M, Rabet N. Horizontal gene transfer and the evolution of cnidarian stinging cells. Curr Biol 2008, 18(18):R858-R859. 10.1016/j.cub.2008.07.031, 18812079.
-
(2008)
Curr Biol
, vol.18
, Issue.18
-
-
Denker, E.1
Bapteste, E.2
Le Guyader, H.3
Manuel, M.4
Rabet, N.5
-
12
-
-
40649111872
-
Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins
-
10.1073/pnas.0707388105, 2268171, 18268342
-
Starcevic A, Akthar S, Dunlap WC, Shick JM, Hranueli D, Cullum J, Long PF. Enzymes of the shikimic acid pathway encoded in the genome of a basal metazoan, Nematostella vectensis, have microbial origins. Proc Natl Acad Sci U S A 2008, 105(7):2533-2537. 10.1073/pnas.0707388105, 2268171, 18268342.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.7
, pp. 2533-2537
-
-
Starcevic, A.1
Akthar, S.2
Dunlap, W.C.3
Shick, J.M.4
Hranueli, D.5
Cullum, J.6
Long, P.F.7
-
13
-
-
84870607366
-
Lateral gene transfers have polished animal genomes: lessons from nematodes
-
3417587, 22919619
-
Danchin EGJ, Rosso MN. Lateral gene transfers have polished animal genomes: lessons from nematodes. Front Cell Infect Microbiol 2012, 2:27. 3417587, 22919619.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 27
-
-
Danchin, E.G.J.1
Rosso, M.N.2
-
14
-
-
77951831492
-
Lateral transfer of genes from fungi underlies carotenoid production in aphids
-
10.1126/science.1187113, 20431015
-
Moran NA, Jarvik T. Lateral transfer of genes from fungi underlies carotenoid production in aphids. Science 2010, 328(5978):624-627. 10.1126/science.1187113, 20431015.
-
(2010)
Science
, vol.328
, Issue.5978
, pp. 624-627
-
-
Moran, N.A.1
Jarvik, T.2
-
15
-
-
64049094506
-
Aphids acquired symbiotic genes via lateral gene transfer
-
10.1186/1741-7007-7-12, 2662799, 19284544
-
Nikoh N, Nakabachi A. Aphids acquired symbiotic genes via lateral gene transfer. BMC Biol 2009, 7:12. 10.1186/1741-7007-7-12, 2662799, 19284544.
-
(2009)
BMC Biol
, vol.7
, pp. 12
-
-
Nikoh, N.1
Nakabachi, A.2
-
16
-
-
84863237607
-
Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee
-
10.1073/pnas.1121190109, 3306691, 22371593
-
Acuna R, Padilla BE, Florez-Ramos CP, Rubio JD, Herrera JC, Benavides P, Lee SJ, Yeats TH, Egan AN, Doyle JJ, et al. Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc Natl Acad Sci USA 2012, 109(11):4197-4202. 10.1073/pnas.1121190109, 3306691, 22371593.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.11
, pp. 4197-4202
-
-
Acuna, R.1
Padilla, B.E.2
Florez-Ramos, C.P.3
Rubio, J.D.4
Herrera, J.C.5
Benavides, P.6
Lee, S.J.7
Yeats, T.H.8
Egan, A.N.9
Doyle, J.J.10
-
17
-
-
84875332105
-
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest
-
10.1186/gb-2013-14-3-r27, 23537049
-
Keeling CI, Yuen MM, Liao NY, Roderick Docking T, Chan SK, Taylor GA, Palmquist DL, Jackman SD, Nguyen A, Li M, et al. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest. Genome Biol 2013, 14(3):R27. 10.1186/gb-2013-14-3-r27, 23537049.
-
(2013)
Genome Biol
, vol.14
, Issue.3
-
-
Keeling, C.I.1
Yuen, M.M.2
Liao, N.Y.3
Roderick Docking, T.4
Chan, S.K.5
Taylor, G.A.6
Palmquist, D.L.7
Jackman, S.D.8
Nguyen, A.9
Li, M.10
-
18
-
-
77951791814
-
A fungal past to insect color
-
10.1126/science.1190417, 20431000
-
Fukatsu T. A fungal past to insect color. Science 2010, 328(5978):574-575. 10.1126/science.1190417, 20431000.
-
(2010)
Science
, vol.328
, Issue.5978
, pp. 574-575
-
-
Fukatsu, T.1
-
19
-
-
73449106108
-
The give-and-take of DNA: horizontal gene transfer in plants
-
10.1016/j.tplants.2009.10.001, 19910236
-
Bock R. The give-and-take of DNA: horizontal gene transfer in plants. Trends Plant Sci 2010, 15(1):11-22. 10.1016/j.tplants.2009.10.001, 19910236.
-
(2010)
Trends Plant Sci
, vol.15
, Issue.1
, pp. 11-22
-
-
Bock, R.1
-
20
-
-
84877092748
-
Horizontal gene transfer in the innovation and adaptation of land plants
-
10.4161/psb.24130, 23470724
-
Yue J, Hu X, Huang J. Horizontal gene transfer in the innovation and adaptation of land plants. Plant Signal Behav 2013, 8(5):e24130. 10.4161/psb.24130, 23470724.
-
(2013)
Plant Signal Behav
, vol.8
, Issue.5
-
-
Yue, J.1
Hu, X.2
Huang, J.3
-
21
-
-
84869409983
-
Widespread impact of horizontal gene transfer on plant colonization of land
-
3493653, 23093189
-
Yue J, Hu X, Sun H, Yang Y, Huang J. Widespread impact of horizontal gene transfer on plant colonization of land. Nat Commun 2012, 3:1152. 3493653, 23093189.
-
(2012)
Nat Commun
, vol.3
, pp. 1152
-
-
Yue, J.1
Hu, X.2
Sun, H.3
Yang, Y.4
Huang, J.5
-
22
-
-
33845904639
-
Horizontal gene transfer in plants
-
Richardson AO, Palmer JD. Horizontal gene transfer in plants. J Exp Bot 2007, 58(1):1-9.
-
(2007)
J Exp Bot
, vol.58
, Issue.1
, pp. 1-9
-
-
Richardson, A.O.1
Palmer, J.D.2
-
23
-
-
84874771840
-
Massive mitochondrial gene transfer in a parasitic flowering plant clade
-
10.1371/journal.pgen.1003265, 3573108, 23459037
-
Xi Z, Wang Y, Bradley RK, Sugumaran M, Marx CJ, Rest JS, Davis CC. Massive mitochondrial gene transfer in a parasitic flowering plant clade. PLoS Genet 2013, 9(2):e1003265. 10.1371/journal.pgen.1003265, 3573108, 23459037.
-
(2013)
PLoS Genet
, vol.9
, Issue.2
-
-
Xi, Z.1
Wang, Y.2
Bradley, R.K.3
Sugumaran, M.4
Marx, C.J.5
Rest, J.S.6
Davis, C.C.7
-
24
-
-
84874890905
-
-
Netherlands: Springer, Horizontal Gene Transfer in Eukaryotes: Fungi-to-Plant and Plant-to-Plant Transfers of Organellar DNA
-
Renner SS, Bellot S. Genomics of Chloroplasts and Mitochondria 2012, 223-235. Netherlands: Springer, Horizontal Gene Transfer in Eukaryotes: Fungi-to-Plant and Plant-to-Plant Transfers of Organellar DNA.
-
(2012)
Genomics of Chloroplasts and Mitochondria
, pp. 223-235
-
-
Renner, S.S.1
Bellot, S.2
-
25
-
-
31144442173
-
Horizontal transfer of a plant transposon
-
10.1371/journal.pbio.0040005, 1310652, 16336045
-
Diao X, Freeling M, Lisch D. Horizontal transfer of a plant transposon. PLoS Biol 2006, 4(1):e5. 10.1371/journal.pbio.0040005, 1310652, 16336045.
-
(2006)
PLoS Biol
, vol.4
, Issue.1
-
-
Diao, X.1
Freeling, M.2
Lisch, D.3
-
26
-
-
84857925836
-
Adaptive Evolution of C-4 Photosynthesis through Recurrent Lateral Gene Transfer
-
10.1016/j.cub.2012.01.054, 22342748
-
Christin PA, Edwards EJ, Besnard G, Boxall SF, Gregory R, Kellogg EA, Hartwell J, Osborne CP. Adaptive Evolution of C-4 Photosynthesis through Recurrent Lateral Gene Transfer. Curr Biol 2012, 22(5):445-449. 10.1016/j.cub.2012.01.054, 22342748.
-
(2012)
Curr Biol
, vol.22
, Issue.5
, pp. 445-449
-
-
Christin, P.A.1
Edwards, E.J.2
Besnard, G.3
Boxall, S.F.4
Gregory, R.5
Kellogg, E.A.6
Hartwell, J.7
Osborne, C.P.8
-
27
-
-
84884718654
-
Horizontal gene transfer in eukaryotes: the weak-link model
-
Huang J. Horizontal gene transfer in eukaryotes: the weak-link model. Bioessays 2013, 35(10):868-875.
-
(2013)
Bioessays
, vol.35
, Issue.10
, pp. 868-875
-
-
Huang, J.1
-
28
-
-
3442897333
-
Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales
-
10.1126/science.1100671, 15256617
-
Davis CC, Wurdack KJ. Host-to-parasite gene transfer in flowering plants: phylogenetic evidence from Malpighiales. Science 2004, 305(5684):676-678. 10.1126/science.1100671, 15256617.
-
(2004)
Science
, vol.305
, Issue.5684
, pp. 676-678
-
-
Davis, C.C.1
Wurdack, K.J.2
-
29
-
-
84875011095
-
Complete chloroplast genome sequence of holoparasite Cistanche deserticola (orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (chenopodiaceae)
-
10.1371/journal.pone.0058747, 3598846, 23554920
-
Li X, Zhang TC, Qiao Q, Ren Z, Zhao J, Yonezawa T, Hasegawa M, Crabbe MJ, Li J, Zhong Y. Complete chloroplast genome sequence of holoparasite Cistanche deserticola (orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (chenopodiaceae). PLoS One 2013, 8(3):e58747. 10.1371/journal.pone.0058747, 3598846, 23554920.
-
(2013)
PLoS One
, vol.8
, Issue.3
-
-
Li, X.1
Zhang, T.C.2
Qiao, Q.3
Ren, Z.4
Zhao, J.5
Yonezawa, T.6
Hasegawa, M.7
Crabbe, M.J.8
Li, J.9
Zhong, Y.10
-
30
-
-
9144239489
-
Plant genetics: gene transfer from parasitic to host plants
-
Mower JP, Stefanovic S, Young GJ, Palmer JD. Plant genetics: gene transfer from parasitic to host plants. Nature 2004, 432(7014):165-166.
-
(2004)
Nature
, vol.432
, Issue.7014
, pp. 165-166
-
-
Mower, J.P.1
Stefanovic, S.2
Young, G.J.3
Palmer, J.D.4
-
31
-
-
27244460680
-
Gene transfer from a parasitic flowering plant to a fern
-
Davis CC, Anderson WR, Wurdack KJ. Gene transfer from a parasitic flowering plant to a fern. Proc Biol Sci/R Soc 2005, 272(1578):2237-2242.
-
(2005)
Proc Biol Sci/R Soc
, vol.272
, Issue.1578
, pp. 2237-2242
-
-
Davis, C.C.1
Anderson, W.R.2
Wurdack, K.J.3
-
32
-
-
78650378822
-
Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
-
10.1186/1741-7007-8-150, 3022774, 21176201
-
Mower JP, Stefanovic S, Hao W, Gummow JS, Jain K, Ahmed D, Palmer JD. Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes. BMC Biol 2010, 8:150. 10.1186/1741-7007-8-150, 3022774, 21176201.
-
(2010)
BMC Biol
, vol.8
, pp. 150
-
-
Mower, J.P.1
Stefanovic, S.2
Hao, W.3
Gummow, J.S.4
Jain, K.5
Ahmed, D.6
Palmer, J.D.7
-
33
-
-
77953003221
-
Horizontal gene transfer by the parasitic plant Striga hermonthica
-
10.1126/science.1187145, 20508124
-
Yoshida S, Maruyama S, Nozaki H, Shirasu K. Horizontal gene transfer by the parasitic plant Striga hermonthica. Science 2010, 328(5982):1128. 10.1126/science.1187145, 20508124.
-
(2010)
Science
, vol.328
, Issue.5982
, pp. 1128
-
-
Yoshida, S.1
Maruyama, S.2
Nozaki, H.3
Shirasu, K.4
-
34
-
-
84861935738
-
Horizontal transfer of expressed genes in a parasitic flowering plant
-
10.1186/1471-2164-13-227, 3460754, 22681756
-
Xi Z, Bradley RK, Wurdack KJ, Wong K, Sugumaran M, Bomblies K, Rest JS, Davis CC. Horizontal transfer of expressed genes in a parasitic flowering plant. BMC Genomics 2012, 13:227. 10.1186/1471-2164-13-227, 3460754, 22681756.
-
(2012)
BMC Genomics
, vol.13
, pp. 227
-
-
Xi, Z.1
Bradley, R.K.2
Wurdack, K.J.3
Wong, K.4
Sugumaran, M.5
Bomblies, K.6
Rest, J.S.7
Davis, C.C.8
-
35
-
-
84873961817
-
Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species
-
10.1186/1471-2148-13-48, 3601976, 23425243
-
Zhang Y, Fernandez-Aparicio M, Wafula EK, Das M, Jiao Y, Wickett NJ, Honaas LA, Ralph PE, Wojciechowski MF, Timko MP, et al. Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species. BMC Evol Biol 2013, 13:48. 10.1186/1471-2148-13-48, 3601976, 23425243.
-
(2013)
BMC Evol Biol
, vol.13
, pp. 48
-
-
Zhang, Y.1
Fernandez-Aparicio, M.2
Wafula, E.K.3
Das, M.4
Jiao, Y.5
Wickett, N.J.6
Honaas, L.A.7
Ralph, P.E.8
Wojciechowski, M.F.9
Timko, M.P.10
-
36
-
-
33847017189
-
Correlated evolution of life history and host range in the nonphotosynthetic parasitic flowering plants Orobanche and Phelipanche (Orobanchaceae)
-
10.1111/j.1420-9101.2006.01273.x, 17305812
-
Schneeweiss GM. Correlated evolution of life history and host range in the nonphotosynthetic parasitic flowering plants Orobanche and Phelipanche (Orobanchaceae). J Evol Biol 2007, 20(2):471-478. 10.1111/j.1420-9101.2006.01273.x, 17305812.
-
(2007)
J Evol Biol
, vol.20
, Issue.2
, pp. 471-478
-
-
Schneeweiss, G.M.1
-
37
-
-
84860166343
-
Parasitic weeds: a world challenge
-
Parker C. Parasitic weeds: a world challenge. Weed Sci 2012, 60(2):269-276.
-
(2012)
Weed Sci
, vol.60
, Issue.2
, pp. 269-276
-
-
Parker, C.1
-
38
-
-
0001217153
-
Biology and control of Cuscuta
-
Dawson JH, Musselman LJ, Wolswinkel P, Dorr I. Biology and control of Cuscuta. Rev Weed Sci 1994, 6:265-317.
-
(1994)
Rev Weed Sci
, vol.6
, pp. 265-317
-
-
Dawson, J.H.1
Musselman, L.J.2
Wolswinkel, P.3
Dorr, I.4
-
39
-
-
84856585935
-
Phytozome: a comparative platform for green plant genomics
-
Database issue, 3245001, 22110026
-
Goodstein DM, Shu S, Howson R, Neupane R, Hayes RD, Fazo J, Mitros T, Dirks W, Hellsten U, Putnam N, et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 2012, 40(Database issue):D1178-D1186. 3245001, 22110026.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Goodstein, D.M.1
Shu, S.2
Howson, R.3
Neupane, R.4
Hayes, R.D.5
Fazo, J.6
Mitros, T.7
Dirks, W.8
Hellsten, U.9
Putnam, N.10
-
40
-
-
84857364423
-
The parasitic plant genome project: New tools for understanding the biology of Orobanche and Striga
-
Westwood JH, dePamphilis CW, Das M, Fernandez-Aparicio M, Honaas LA, Timko MP, Wafula EK, Wickett NJ, Yoder JI. The parasitic plant genome project: New tools for understanding the biology of Orobanche and Striga. Weed Sci 2012, 60(2):295-306.
-
(2012)
Weed Sci
, vol.60
, Issue.2
, pp. 295-306
-
-
Westwood, J.H.1
dePamphilis, C.W.2
Das, M.3
Fernandez-Aparicio, M.4
Honaas, L.A.5
Timko, M.P.6
Wafula, E.K.7
Wickett, N.J.8
Yoder, J.I.9
-
41
-
-
84892487543
-
-
New Orleans, Louisiana: The third International Conference on Bioinformatics and Computational Biology (BICoB)
-
Tian J, Sun G, Ding Q, Huang J, Oruganti S, Xie B. The third International Conference on Bioinformatics and Computational Biology (BICoB): 23-25 March 2011 2011, New Orleans, Louisiana: The third International Conference on Bioinformatics and Computational Biology (BICoB).
-
(2011)
The third International Conference on Bioinformatics and Computational Biology (BICoB): 23-25 March 2011
-
-
Tian, J.1
Sun, G.2
Ding, Q.3
Huang, J.4
Oruganti, S.5
Xie, B.6
-
42
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
U130, 10.1038/nbt.1883, 3571712, 21572440
-
Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng QD, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 2011, 29(7):644. U130, 10.1038/nbt.1883, 3571712, 21572440.
-
(2011)
Nat Biotechnol
, vol.29
, Issue.7
, pp. 644
-
-
Grabherr, M.G.1
Haas, B.J.2
Yassour, M.3
Levin, J.Z.4
Thompson, D.A.5
Amit, I.6
Adiconis, X.7
Fan, L.8
Raychowdhury, R.9
Zeng, Q.D.10
-
43
-
-
38849124960
-
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
-
10.1186/1471-2229-7-57, 2216012, 17956636
-
McNeal JR, Kuehl JV, Boore JL, de Pamphilis CW. Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. BMC Plant Biol 2007, 7:57. 10.1186/1471-2229-7-57, 2216012, 17956636.
-
(2007)
BMC Plant Biol
, vol.7
, pp. 57
-
-
McNeal, J.R.1
Kuehl, J.V.2
Boore, J.L.3
de Pamphilis, C.W.4
-
44
-
-
84888425451
-
Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family
-
10.1105/tpc.113.113373, 3877813, 24143802
-
Wicke S, Muller KF, de Pamphilis CW, Quandt D, Wickett NJ, Zhang Y, Renner SS, Schneeweiss GM. Mechanisms of functional and physical genome reduction in photosynthetic and nonphotosynthetic parasitic plants of the broomrape family. Plant Cell 2013, 25(10):3711-3725. 10.1105/tpc.113.113373, 3877813, 24143802.
-
(2013)
Plant Cell
, vol.25
, Issue.10
, pp. 3711-3725
-
-
Wicke, S.1
Muller, K.F.2
de Pamphilis, C.W.3
Quandt, D.4
Wickett, N.J.5
Zhang, Y.6
Renner, S.S.7
Schneeweiss, G.M.8
-
45
-
-
58749109023
-
Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes
-
Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P. Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinform 2008, 2008:420747.
-
(2008)
Adv Bioinform
, vol.2008
, pp. 420747
-
-
Hruz, T.1
Laule, O.2
Szabo, G.3
Wessendorp, F.4
Bleuler, S.5
Oertle, L.6
Widmayer, P.7
Gruissem, W.8
Zimmermann, P.9
-
46
-
-
0037129827
-
Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
-
RESEARCH0034, 126239, 12184808
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3(7):RESEARCH0034. 126239, 12184808.
-
(2002)
Genome Biol
, vol.3
, Issue.7
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
Speleman, F.7
-
47
-
-
33750295976
-
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
-
10.1186/1471-2199-7-33, 1609175, 17026756
-
Silver N, Best S, Jiang J, Thein SL. Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR. BMC Mol Biol 2006, 7:33. 10.1186/1471-2199-7-33, 1609175, 17026756.
-
(2006)
BMC Mol Biol
, vol.7
, pp. 33
-
-
Silver, N.1
Best, S.2
Jiang, J.3
Thein, S.L.4
-
48
-
-
1842483281
-
Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
-
Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol Lett 2004, 26(6):509-515.
-
(2004)
Biotechnol Lett
, vol.26
, Issue.6
, pp. 509-515
-
-
Pfaffl, M.W.1
Tichopad, A.2
Prgomet, C.3
Neuvians, T.P.4
-
49
-
-
3442876969
-
Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
-
10.1158/0008-5472.CAN-04-0496, 15289330
-
Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 2004, 64(15):5245-5250. 10.1158/0008-5472.CAN-04-0496, 15289330.
-
(2004)
Cancer Res
, vol.64
, Issue.15
, pp. 5245-5250
-
-
Andersen, C.L.1
Jensen, J.L.2
Orntoft, T.F.3
-
50
-
-
84865407608
-
MiRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs
-
Xie F, Xiao P, Chen D, Xu L, Zhang B. miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs. Plant Mol Biol 2012, 80(1):75-84.
-
(2012)
Plant Mol Biol
, vol.80
, Issue.1
, pp. 75-84
-
-
Xie, F.1
Xiao, P.2
Chen, D.3
Xu, L.4
Zhang, B.5
-
51
-
-
0036205440
-
DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family
-
10.1093/bioinformatics/18.3.500, 11934757
-
Gu X, Vander Velden K. DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family. Bioinformatics 2002, 18(3):500-501. 10.1093/bioinformatics/18.3.500, 11934757.
-
(2002)
Bioinformatics
, vol.18
, Issue.3
, pp. 500-501
-
-
Gu, X.1
Vander Velden, K.2
-
52
-
-
84878925597
-
An update of DIVERGE software for functional divergence analysis of protein family
-
10.1093/molbev/mst069, 23589455
-
Gu X, Zou Y, Su Z, Huang W, Zhou Z, Arendsee Z, Zeng Y. An update of DIVERGE software for functional divergence analysis of protein family. Mol Biol Evol 2013, 30(7):1713-1719. 10.1093/molbev/mst069, 23589455.
-
(2013)
Mol Biol Evol
, vol.30
, Issue.7
, pp. 1713-1719
-
-
Gu, X.1
Zou, Y.2
Su, Z.3
Huang, W.4
Zhou, Z.5
Arendsee, Z.6
Zeng, Y.7
-
53
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
10.1093/molbev/msm088, 17483113
-
Yang Z. PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007, 24(8):1586-1591. 10.1093/molbev/msm088, 17483113.
-
(2007)
Mol Biol Evol
, vol.24
, Issue.8
, pp. 1586-1591
-
-
Yang, Z.1
-
54
-
-
65649151732
-
RNA translocation between parasitic plants and their hosts
-
10.1002/ps.1727, 19253417
-
Westwood JH, Roney JK, Khatibi PA, Stromberg VK. RNA translocation between parasitic plants and their hosts. Pest Manag Sci 2009, 65(5):533-539. 10.1002/ps.1727, 19253417.
-
(2009)
Pest Manag Sci
, vol.65
, Issue.5
, pp. 533-539
-
-
Westwood, J.H.1
Roney, J.K.2
Khatibi, P.A.3
Stromberg, V.K.4
-
55
-
-
84887122111
-
Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona
-
Leblanc M, Kim G, Patel B, Stromberg V, Westwood J. Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona. New Phytol 2013, 200(4):1225-1233.
-
(2013)
New Phytol
, vol.200
, Issue.4
, pp. 1225-1233
-
-
Leblanc, M.1
Kim, G.2
Patel, B.3
Stromberg, V.4
Westwood, J.5
-
56
-
-
40849095856
-
Origin and timing of the horizontal transfer of a PgiC gene from Poa to Festuca ovina
-
10.1016/j.ympev.2007.11.031, 18226929
-
Vallenback P, Jaarola M, Ghatnekar L, Bengtsson BO. Origin and timing of the horizontal transfer of a PgiC gene from Poa to Festuca ovina. Mol Phylogenet Evol 2008, 46(3):890-896. 10.1016/j.ympev.2007.11.031, 18226929.
-
(2008)
Mol Phylogenet Evol
, vol.46
, Issue.3
, pp. 890-896
-
-
Vallenback, P.1
Jaarola, M.2
Ghatnekar, L.3
Bengtsson, B.O.4
-
57
-
-
62749166968
-
Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants including tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes
-
10.1016/j.virol.2009.01.039, 19243807
-
Igarashi A, Yamagata K, Sugai T, Takahashi Y, Sugawara E, Tamura A, Yaegashi H, Yamagishi N, Takahashi T, Isogai M, et al. Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants including tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes. Virology 2009, 386(2):407-416. 10.1016/j.virol.2009.01.039, 19243807.
-
(2009)
Virology
, vol.386
, Issue.2
, pp. 407-416
-
-
Igarashi, A.1
Yamagata, K.2
Sugai, T.3
Takahashi, Y.4
Sugawara, E.5
Tamura, A.6
Yaegashi, H.7
Yamagishi, N.8
Takahashi, T.9
Isogai, M.10
-
58
-
-
84884160993
-
RNA trafficking in parasitic plant systems
-
3424422, 22936942
-
Leblanc M, Kim G, Westwood JH. RNA trafficking in parasitic plant systems. Front Plant Sci 2012, 3:203. 3424422, 22936942.
-
(2012)
Front Plant Sci
, vol.3
, pp. 203
-
-
Leblanc, M.1
Kim, G.2
Westwood, J.H.3
-
59
-
-
80955163813
-
Movement of protein and macromolecules between host plants and the parasitic weed Phelipanche aegyptiaca Pers
-
10.1007/s00299-011-1128-5, 21811827
-
Aly R, Hamamouch N, Abu-Nassar J, Wolf S, Joel DM, Eizenberg H, Kaisler E, Cramer C, Gal-On A, Westwood JH. Movement of protein and macromolecules between host plants and the parasitic weed Phelipanche aegyptiaca Pers. Plant Cell Rep 2011, 30(12):2233-2241. 10.1007/s00299-011-1128-5, 21811827.
-
(2011)
Plant Cell Rep
, vol.30
, Issue.12
, pp. 2233-2241
-
-
Aly, R.1
Hamamouch, N.2
Abu-Nassar, J.3
Wolf, S.4
Joel, D.M.5
Eizenberg, H.6
Kaisler, E.7
Cramer, C.8
Gal-On, A.9
Westwood, J.H.10
-
60
-
-
0035097822
-
Macromolecular trafficking between Nicotiana tabacum and the holoparasite Cuscuta reflexa
-
10.1093/jexbot/52.354.173, 11181727
-
Haupt S, Oparka KJ, Sauer N, Neumann S. Macromolecular trafficking between Nicotiana tabacum and the holoparasite Cuscuta reflexa. J Exp Bot 2001, 52(354):173-177. 10.1093/jexbot/52.354.173, 11181727.
-
(2001)
J Exp Bot
, vol.52
, Issue.354
, pp. 173-177
-
-
Haupt, S.1
Oparka, K.J.2
Sauer, N.3
Neumann, S.4
-
61
-
-
84877591427
-
Inter-species protein trafficking endows dodder (Cuscuta pentagona) with a host-specific herbicide-tolerant trait
-
10.1111/nph.12269, 23550729
-
Jiang L, Qu F, Li Z, Doohan D. Inter-species protein trafficking endows dodder (Cuscuta pentagona) with a host-specific herbicide-tolerant trait. New Phytol 2013, 198(4):1017-1022. 10.1111/nph.12269, 23550729.
-
(2013)
New Phytol
, vol.198
, Issue.4
, pp. 1017-1022
-
-
Jiang, L.1
Qu, F.2
Li, Z.3
Doohan, D.4
-
62
-
-
33644896276
-
Transfer of phloem-mobile substances from the host plants to the holoparasite Cuscuta sp
-
10.1093/jxb/erj076, 16467411
-
Birschwilks M, Haupt S, Hofius D, Neumann S. Transfer of phloem-mobile substances from the host plants to the holoparasite Cuscuta sp. J Exp Bot 2006, 57(4):911-921. 10.1093/jxb/erj076, 16467411.
-
(2006)
J Exp Bot
, vol.57
, Issue.4
, pp. 911-921
-
-
Birschwilks, M.1
Haupt, S.2
Hofius, D.3
Neumann, S.4
-
63
-
-
84934438844
-
Dodder transmission of phytoplasmas
-
10.1007/978-1-62703-089-2_4, 22987404
-
Pribylova J, Spak J. Dodder transmission of phytoplasmas. Methods Mol Biol 2013, 938:41-46. 10.1007/978-1-62703-089-2_4, 22987404.
-
(2013)
Methods Mol Biol
, vol.938
, pp. 41-46
-
-
Pribylova, J.1
Spak, J.2
-
64
-
-
65549129584
-
Exchange of genetic material between cells in plant tissue grafts
-
10.1126/science.1170397, 19407205
-
Stegemann S, Bock R. Exchange of genetic material between cells in plant tissue grafts. Science 2009, 324(5927):649-651. 10.1126/science.1170397, 19407205.
-
(2009)
Science
, vol.324
, Issue.5927
, pp. 649-651
-
-
Stegemann, S.1
Bock, R.2
-
65
-
-
84857136440
-
Horizontal transfer of chloroplast genomes between plant species
-
10.1073/pnas.1114076109, 3289295, 22308367
-
Stegemann S, Keuthe M, Greiner S, Bock R. Horizontal transfer of chloroplast genomes between plant species. Proc Natl Acad Sci USA 2012, 109(7):2434-2438. 10.1073/pnas.1114076109, 3289295, 22308367.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.7
, pp. 2434-2438
-
-
Stegemann, S.1
Keuthe, M.2
Greiner, S.3
Bock, R.4
-
66
-
-
0000868239
-
Homogeneous strictosidine synthase from cell-suspension cultures of rauvolfia-serpentina
-
Hampp N, Zenk MH. Homogeneous strictosidine synthase from cell-suspension cultures of rauvolfia-serpentina. Phytochemistry 1988, 27(12):3811-3815.
-
(1988)
Phytochemistry
, vol.27
, Issue.12
, pp. 3811-3815
-
-
Hampp, N.1
Zenk, M.H.2
-
67
-
-
0024285106
-
The cDNA clone for strictosidine synthase from Rauvolfia serpentina. DNA sequence determination and expression in Escherichia coli
-
Kutchan TM, Hampp N, Lottspeich F, Beyreuther K, Zenk MH. The cDNA clone for strictosidine synthase from Rauvolfia serpentina. DNA sequence determination and expression in Escherichia coli. FEBS Lett 1988, 237(1-2):40-44.
-
(1988)
FEBS Lett
, vol.237
, Issue.1-2
, pp. 40-44
-
-
Kutchan, T.M.1
Hampp, N.2
Lottspeich, F.3
Beyreuther, K.4
Zenk, M.H.5
-
68
-
-
0025044913
-
Nucleotide sequence of a cDNA encoding the vacuolar protein strictosidine synthase from Catharanthus roseus
-
10.1093/nar/18.16.4939, 332004, 2395663
-
McKnight TD, Roessner CA, Devagupta R, Scott AI, Nessler CL. Nucleotide sequence of a cDNA encoding the vacuolar protein strictosidine synthase from Catharanthus roseus. Nucleic Acids Res 1990, 18(16):4939. 10.1093/nar/18.16.4939, 332004, 2395663.
-
(1990)
Nucleic Acids Res
, vol.18
, Issue.16
, pp. 4939
-
-
McKnight, T.D.1
Roessner, C.A.2
Devagupta, R.3
Scott, A.I.4
Nessler, C.L.5
-
69
-
-
56749163578
-
Molecular cloning and characterization of the Strictosidine synthase Gene from Rauwolfia verticillata
-
Chen R, Liao ZH, Chen M, Wang Q, Yang CX, Yang YJ. Molecular cloning and characterization of the Strictosidine synthase Gene from Rauwolfia verticillata. Russ J Plant Phys 2008, 55(5):670-675.
-
(2008)
Russ J Plant Phys
, vol.55
, Issue.5
, pp. 670-675
-
-
Chen, R.1
Liao, Z.H.2
Chen, M.3
Wang, Q.4
Yang, C.X.5
Yang, Y.J.6
-
70
-
-
68149157985
-
Molecular characterization and expression analysis of a new cDNA encoding strictosidine synthase from Ophiorrhiza japonica
-
10.1007/s11033-008-9389-y, 18987991
-
Lu Y, Wang H, Wang W, Qian Z, Li L, Wang J, Zhou G, Kai G. Molecular characterization and expression analysis of a new cDNA encoding strictosidine synthase from Ophiorrhiza japonica. Mol Biol Rep 2009, 36(7):1845-1852. 10.1007/s11033-008-9389-y, 18987991.
-
(2009)
Mol Biol Rep
, vol.36
, Issue.7
, pp. 1845-1852
-
-
Lu, Y.1
Wang, H.2
Wang, W.3
Qian, Z.4
Li, L.5
Wang, J.6
Zhou, G.7
Kai, G.8
-
71
-
-
33745473834
-
The structure of Rauvolfia serpentina strictosidine synthase is a novel six-bladed beta-propeller fold in plant proteins
-
10.1105/tpc.105.038018, 1425862, 16531499
-
Ma X, Panjikar S, Koepke J, Loris E, Stockigt J. The structure of Rauvolfia serpentina strictosidine synthase is a novel six-bladed beta-propeller fold in plant proteins. Plant Cell 2006, 18(4):907-920. 10.1105/tpc.105.038018, 1425862, 16531499.
-
(2006)
Plant Cell
, vol.18
, Issue.4
, pp. 907-920
-
-
Ma, X.1
Panjikar, S.2
Koepke, J.3
Loris, E.4
Stockigt, J.5
-
72
-
-
40849134104
-
3D-Structure and function of strictosidine synthase-the key enzyme of monoterpenoid indole alkaloid biosynthesis
-
10.1016/j.plaphy.2007.12.011, 18280746
-
Stockigt J, Barleben L, Panjikar S, Loris EA. 3D-Structure and function of strictosidine synthase-the key enzyme of monoterpenoid indole alkaloid biosynthesis. Plant Physiol Biochem 2008, 46(3):340-355. 10.1016/j.plaphy.2007.12.011, 18280746.
-
(2008)
Plant Physiol Biochem
, vol.46
, Issue.3
, pp. 340-355
-
-
Stockigt, J.1
Barleben, L.2
Panjikar, S.3
Loris, E.A.4
-
73
-
-
80053952580
-
The evolution of function in strictosidine synthase-like proteins
-
10.1002/prot.23135, 3561908, 21948213
-
Hicks MA, Barber AE, Giddings LA, Caldwell J, O'Connor SE, Babbitt PC. The evolution of function in strictosidine synthase-like proteins. Proteins 2011, 79(11):3082-3098. 10.1002/prot.23135, 3561908, 21948213.
-
(2011)
Proteins
, vol.79
, Issue.11
, pp. 3082-3098
-
-
Hicks, M.A.1
Barber, A.E.2
Giddings, L.A.3
Caldwell, J.4
O'Connor, S.E.5
Babbitt, P.C.6
-
74
-
-
79960546467
-
Horizontal gene transfer in nematodes: a catalyst for plant parasitism?
-
Haegeman A, Jones JT, Danchin EG. Horizontal gene transfer in nematodes: a catalyst for plant parasitism?. MolPlant Microbe Interact 2011, 24(8):879-887.
-
(2011)
MolPlant Microbe Interact
, vol.24
, Issue.8
, pp. 879-887
-
-
Haegeman, A.1
Jones, J.T.2
Danchin, E.G.3
-
75
-
-
80053058594
-
Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
-
10.1073/pnas.1105100108, 3174590, 21878562
-
Richards TA, Soanes DM, Jones MD, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ. Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc Natl Acad Sci USA 2011, 108(37):15258-15263. 10.1073/pnas.1105100108, 3174590, 21878562.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, Issue.37
, pp. 15258-15263
-
-
Richards, T.A.1
Soanes, D.M.2
Jones, M.D.3
Vasieva, O.4
Leonard, G.5
Paszkiewicz, K.6
Foster, P.G.7
Hall, N.8
Talbot, N.J.9
-
76
-
-
84872223595
-
Plant defense against herbivores: chemical aspects
-
10.1146/annurev-arplant-042110-103854, 22404468
-
Mithofer A, Boland W. Plant defense against herbivores: chemical aspects. Annu Rev Plant Biol 2012, 63:431-450. 10.1146/annurev-arplant-042110-103854, 22404468.
-
(2012)
Annu Rev Plant Biol
, vol.63
, pp. 431-450
-
-
Mithofer, A.1
Boland, W.2
-
77
-
-
0037002402
-
Plant responses to insect herbivory: the emerging molecular analysis
-
10.1146/annurev.arplant.53.100301.135207, 12221978
-
Kessler A, Baldwin IT. Plant responses to insect herbivory: the emerging molecular analysis. Annu Rev Plant Biol 2002, 53:299-328. 10.1146/annurev.arplant.53.100301.135207, 12221978.
-
(2002)
Annu Rev Plant Biol
, vol.53
, pp. 299-328
-
-
Kessler, A.1
Baldwin, I.T.2
-
78
-
-
81255151148
-
Influence of abiotic stress signals on secondary metabolites in plants
-
10.4161/psb.6.11.17613, 3329344, 22041989
-
Ramakrishna A, Ravishankar GA. Influence of abiotic stress signals on secondary metabolites in plants. Plant Signal Behav 2011, 6(11):1720-1731. 10.4161/psb.6.11.17613, 3329344, 22041989.
-
(2011)
Plant Signal Behav
, vol.6
, Issue.11
, pp. 1720-1731
-
-
Ramakrishna, A.1
Ravishankar, G.A.2
-
79
-
-
79961123152
-
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinforma 2011, 12:323.
-
(2011)
BMC Bioinforma
, vol.12
, pp. 323
-
-
Li, B.1
Dewey, C.N.2
-
80
-
-
23144455729
-
OrfPredictor: predicting protein-coding regions in EST-derived sequences
-
Web Server issue, 1160155, 15980561
-
Min XJ, Butler G, Storms R, Tsang A. OrfPredictor: predicting protein-coding regions in EST-derived sequences. Nucleic Acids Res 2005, 33(Web Server issue):W677-W680. 1160155, 15980561.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Min, X.J.1
Butler, G.2
Storms, R.3
Tsang, A.4
-
81
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin M. Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet J 2011, 17:10-12.
-
(2011)
EMBnet J
, vol.17
, pp. 10-12
-
-
Martin, M.1
-
82
-
-
79960698975
-
Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies
-
10.1016/j.ygeno.2011.05.009, 21651976
-
Kong Y. Btrim: a fast, lightweight adapter and quality trimming program for next-generation sequencing technologies. Genomics 2011, 98(2):152-153. 10.1016/j.ygeno.2011.05.009, 21651976.
-
(2011)
Genomics
, vol.98
, Issue.2
, pp. 152-153
-
-
Kong, Y.1
-
83
-
-
77949512406
-
Tablet-next generation sequence assembly visualization
-
10.1093/bioinformatics/btp666, 2815658, 19965881
-
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D. Tablet-next generation sequence assembly visualization. Bioinformatics 2010, 26(3):401-402. 10.1093/bioinformatics/btp666, 2815658, 19965881.
-
(2010)
Bioinformatics
, vol.26
, Issue.3
, pp. 401-402
-
-
Milne, I.1
Bayer, M.2
Cardle, L.3
Shaw, P.4
Stephen, G.5
Wright, F.6
Marshall, D.7
-
84
-
-
0004265596
-
-
New York: Wiley
-
Ausubel F, Brent R, Kingston R, Moore D, Seidman J, Smith J, Struhl K. Current Protocols in Molecular Biology 1987, New York: Wiley.
-
(1987)
Current Protocols in Molecular Biology
-
-
Ausubel, F.1
Brent, R.2
Kingston, R.3
Moore, D.4
Seidman, J.5
Smith, J.6
Struhl, K.7
-
85
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
10.1093/bioinformatics/btm404, 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23(21):2947-2948. 10.1093/bioinformatics/btm404, 17846036.
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
-
86
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
10.1093/nar/25.24.4876, 147148, 9396791
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25(24):4876-4882. 10.1093/nar/25.24.4876, 147148, 9396791.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
87
-
-
33645816587
-
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
-
10.1186/1471-2148-6-29, 1435933, 16563161
-
Keane TM, Creevey CJ, Pentony MM, Naughton TJ, McLnerney JO. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol Biol 2006, 6:29. 10.1186/1471-2148-6-29, 1435933, 16563161.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 29
-
-
Keane, T.M.1
Creevey, C.J.2
Pentony, M.M.3
Naughton, T.J.4
McLnerney, J.O.5
-
88
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52(5):696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Syst Biol
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
89
-
-
0029853148
-
WWW-query: an on-line retrieval system for biological sequence banks
-
10.1016/0300-9084(96)84768-7, 8905155
-
Perriere G, Gouy M. WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 1996, 78(5):364-369. 10.1016/0300-9084(96)84768-7, 8905155.
-
(1996)
Biochimie
, vol.78
, Issue.5
, pp. 364-369
-
-
Perriere, G.1
Gouy, M.2
-
90
-
-
33747847779
-
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
-
Web Server issue, 1538804, 16845082
-
Suyama M, Torrents D, Bork P. PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 2006, 34(Web Server issue):W609-W612. 1538804, 16845082.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Suyama, M.1
Torrents, D.2
Bork, P.3
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