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Volumn 78, Issue 5, 1996, Pages 364-369

WWW-Query: An on-line retrieval system for biological sequence banks

Author keywords

Multivariate analysis; Phylogeny; Sequence banks; Sequence retrieval system; World Wide Web

Indexed keywords

ARTICLE; CODON USAGE; COMPUTER SYSTEM; DATA BASE; INFORMATION RETRIEVAL; MULTIVARIATE ANALYSIS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY;

EID: 0029853148     PISSN: 03009084     EISSN: None     Source Type: Journal    
DOI: 10.1016/0300-9084(96)84768-7     Document Type: Article
Times cited : (1332)

References (33)
  • 1
    • 0022118360 scopus 로고
    • ACNUC - A portable retrieval system for nucleic acid sequence databases: Logical and physical designs and usage
    • 1 Gouy M, Gautier C, Attimonelli M, Lanave C, di Paola G (1985) ACNUC - a portable retrieval system for nucleic acid sequence databases: logical and physical designs and usage. Comput Applic Biosci 1, 167-172
    • (1985) Comput Applic Biosci , vol.1 , pp. 167-172
    • Gouy, M.1    Gautier, C.2    Attimonelli, M.3    Lanave, C.4    Di Paola, G.5
  • 5
    • 0028247213 scopus 로고
    • Hovergen: A database of homologuous vertebrate genes
    • 5 Duret L, Mouchiroud D, Gouy M (1994) Hovergen: a database of homologuous vertebrate genes. Nucleic Acids Res 22, 2360-2365
    • (1994) Nucleic Acids Res , vol.22 , pp. 2360-2365
    • Duret, L.1    Mouchiroud, D.2    Gouy, M.3
  • 6
    • 0030003657 scopus 로고    scopus 로고
    • NRSub: A non-redundant database for Bacillus subtilis
    • 6 Perrière G, Moszer I, Gojobori T (1996) NRSub: a non-redundant database for Bacillus subtilis. Nucleic Acids Res 24, 41-45
    • (1996) Nucleic Acids Res , vol.24 , pp. 41-45
    • Perrière, G.1    Moszer, I.2    Gojobori, T.3
  • 9
    • 0003050985 scopus 로고
    • ADE software multivariate analysis and graphical display of environmental data
    • (Guariso G, Rizzoli A, eds) Pàtron, Bolonia
    • 9 Thioulouse J, Dolédec S, Chessel D, Olivier JM (1995) ADE software multivariate analysis and graphical display of environmental data. In: Software per l'Ambiente (Guariso G, Rizzoli A, eds) Pàtron, Bolonia, 57-62
    • (1995) Software Per l'Ambiente , pp. 57-62
    • Thioulouse, J.1    Dolédec, S.2    Chessel, D.3    Olivier, J.M.4
  • 11
    • 0019188794 scopus 로고
    • Codon frequencies in 119 individual genes confirm consistent choices of degenerate base according to genome type
    • 11 Grantham R, Gautier C, Gouy M (1980) Codon frequencies in 119 individual genes confirm consistent choices of degenerate base according to genome type. Nucleic Acids Res 8, 1892-1912
    • (1980) Nucleic Acids Res , vol.8 , pp. 1892-1912
    • Grantham, R.1    Gautier, C.2    Gouy, M.3
  • 12
    • 0022589865 scopus 로고
    • Codon usage and gene expression
    • 12 Holm L (1986) Codon usage and gene expression. Nucleic Acids Res 14, 3075-3087
    • (1986) Nucleic Acids Res , vol.14 , pp. 3075-3087
    • Holm, L.1
  • 13
    • 0023652058 scopus 로고
    • Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
    • 13 Shields DC, Sharp PM (1987) Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res 15, 8023-8040
    • (1987) Nucleic Acids Res , vol.15 , pp. 8023-8040
    • Shields, D.C.1    Sharp, P.M.2
  • 14
    • 0028088517 scopus 로고
    • Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes
    • 14 Lobry JR, Gautier C (1994) Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res 22, 3174-3180
    • (1994) Nucleic Acids Res , vol.22 , pp. 3174-3180
    • Lobry, J.R.1    Gautier, C.2
  • 15
    • 0023450024 scopus 로고
    • Statistical methods for predicting protein coding regions in nucleic acids sequences
    • 15 Fichant G, Gautier C (1987) Statistical methods for predicting protein coding regions in nucleic acids sequences. Comput Applic Biosci 3, 287-295
    • (1987) Comput Applic Biosci , vol.3 , pp. 287-295
    • Fichant, G.1    Gautier, C.2
  • 16
    • 0023916853 scopus 로고
    • The Alu family developed through successive waves of fixation closely connected with primate lineage history
    • 16 Quentin Y (1988) The Alu family developed through successive waves of fixation closely connected with primate lineage history. J Mol Evol 27, 194-202
    • (1988) J Mol Evol , vol.27 , pp. 194-202
    • Quentin, Y.1
  • 17
    • 0024498530 scopus 로고
    • Successive waves of fixation of B1 variants in rodent lineage history
    • 17 Quentin Y (1989) Successive waves of fixation of B1 variants in rodent lineage history. J Mol Evol 28, 299-305
    • (1989) J Mol Evol , vol.28 , pp. 299-305
    • Quentin, Y.1
  • 18
    • 0029134925 scopus 로고
    • A frameshift error detection algorithm for DNA sequencing projects
    • 18 Fichant GA, Quentin Y (1995) A frameshift error detection algorithm for DNA sequencing projects. Nucleic Acids Res 23, 2900-2908
    • (1995) Nucleic Acids Res , vol.23 , pp. 2900-2908
    • Fichant, G.A.1    Quentin, Y.2
  • 19
    • 0000071395 scopus 로고
    • Some distance properties of latent root and vector methods used in multivariate analysis
    • 19 Gower JC (1966) Some distance properties of latent root and vector methods used in multivariate analysis. Biometrika 53, 325-328
    • (1966) Biometrika , vol.53 , pp. 325-328
    • Gower, J.C.1
  • 20
    • 0025141443 scopus 로고
    • Automatic generation of primary sequence patterns from sets of related protein sequences
    • 20 Smith RF, Smith TF (1990) Automatic generation of primary sequence patterns from sets of related protein sequences. Proc Natl Acad Sci USA 87, 118-122
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 118-122
    • Smith, R.F.1    Smith, T.F.2
  • 21
    • 0026547387 scopus 로고
    • Sequence ordinations: A multivariate analysis approach to analysing large sequence data sets
    • 21 Higgins DG (1992) Sequence ordinations: a multivariate analysis approach to analysing large sequence data sets. Comput Applic Biosci 8, 15-22
    • (1992) Comput Applic Biosci , vol.8 , pp. 15-22
    • Higgins, D.G.1
  • 22
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • 22 Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 23
    • 0000122573 scopus 로고
    • PHYLIP: Phylogeny inference package (version 3.2)
    • 23 Felsenstein J (1989) PHYLIP: phylogeny inference package (version 3.2). Cladistics 5, 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 24
    • 0024062264 scopus 로고
    • Multiple aligned sequence editor (MASE)
    • 24 Faulkner DV, Jurka J (1988) Multiple aligned sequence editor (MASE). Trends Biochem Sci 13, 321-322
    • (1988) Trends Biochem Sci , vol.13 , pp. 321-322
    • Faulkner, D.V.1    Jurka, J.2
  • 27
    • 0029916911 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence data bank and its new supplement TREMBL
    • 27 Bairoch A, Apweiler R (1996) The SWISS-PROT protein sequence data bank and its new supplement TREMBL. Nucleic Acids Res 24, 21-25
    • (1996) Nucleic Acids Res , vol.24 , pp. 21-25
    • Bairoch, A.1    Apweiler, R.2
  • 28
    • 0029928675 scopus 로고    scopus 로고
    • The ENZYME data bank in 1995
    • 28 Bairoch A (1996) The ENZYME data bank in 1995. Nucleic Acids Res 24, 221-222
    • (1996) Nucleic Acids Res , vol.24 , pp. 221-222
    • Bairoch, A.1
  • 29
    • 0026428609 scopus 로고
    • Is the guinea-pig a rodent?
    • 29 Graur D, Hide WA, Li WH (1991) Is the guinea-pig a rodent? Nature 351, 649-652
    • (1991) Nature , vol.351 , pp. 649-652
    • Graur, D.1    Hide, W.A.2    Li, W.H.3
  • 30
    • 0027457706 scopus 로고
    • SRS - An indexing and retrieval tool for flat file data libraries
    • 30 Etzold T, Argos P (1993) SRS - an indexing and retrieval tool for flat file data libraries. Comput Applic Biosci 9, 49-57
    • (1993) Comput Applic Biosci , vol.9 , pp. 49-57
    • Etzold, T.1    Argos, P.2
  • 31
    • 0027523415 scopus 로고
    • Transforming a set of biological flat file libraries to a fast access network
    • 31 Etzold T, Argos P (1993) Transforming a set of biological flat file libraries to a fast access network. Comput Applic Biosci 9, 59-64
    • (1993) Comput Applic Biosci , vol.9 , pp. 59-64
    • Etzold, T.1    Argos, P.2
  • 32
    • 0011909785 scopus 로고
    • A versatile tool for retrieving molecular sequences: Entrez (release 8.0, December 1993)
    • 32 Cockerill M (1994) A versatile tool for retrieving molecular sequences: Entrez (release 8.0, December 1993). Trends Biochem Sci 19, 94-96
    • (1994) Trends Biochem Sci , vol.19 , pp. 94-96
    • Cockerill, M.1
  • 33
    • 0025864008 scopus 로고
    • Identifying potential tRNA genes in genomic DNA sequences
    • 33 Fichant G, Burks C (1991) Identifying potential tRNA genes in genomic DNA sequences. J Mol Biol 220, 659-671
    • (1991) J Mol Biol , vol.220 , pp. 659-671
    • Fichant, G.1    Burks, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.