-
1
-
-
84879535015
-
Hsp70 oligomerization is mediated by an interaction between the interdomain linker and the substrate-binding domain
-
Aprile F., Dhulesia A., Stengel F., Roodveldt C., Benesch J., Tortora P., Robinson C., Salvatella X., Dobson C., Cremades N. Hsp70 oligomerization is mediated by an interaction between the interdomain linker and the substrate-binding domain. PloS One 2013, 8. 10.1371/journal.pone.0067961.
-
(2013)
PloS One
, vol.8
-
-
Aprile, F.1
Dhulesia, A.2
Stengel, F.3
Roodveldt, C.4
Benesch, J.5
Tortora, P.6
Robinson, C.7
Salvatella, X.8
Dobson, C.9
Cremades, N.10
-
2
-
-
4544228457
-
Functions of NF-kappaB1 and NF-kappaB2 in immune cell biology
-
Beinke S., Ley S.C. Functions of NF-kappaB1 and NF-kappaB2 in immune cell biology. Biochem. J. 2004, 382:393-409. 10.1042/BJ20040544.
-
(2004)
Biochem. J.
, vol.382
, pp. 393-409
-
-
Beinke, S.1
Ley, S.C.2
-
3
-
-
0033618443
-
Activation of the promoters of genes associated with DNA damage, oxidative stress, ER stress and protein malfolding by the bile salt, deoxycholate
-
Bernstein H., Payne C.M., Bernstein C., Schneider J., Beard S.E., Crowley C.L. Activation of the promoters of genes associated with DNA damage, oxidative stress, ER stress and protein malfolding by the bile salt, deoxycholate. Toxicol. Lett. 1999, 108:37-46.
-
(1999)
Toxicol. Lett.
, vol.108
, pp. 37-46
-
-
Bernstein, H.1
Payne, C.M.2
Bernstein, C.3
Schneider, J.4
Beard, S.E.5
Crowley, C.L.6
-
4
-
-
23244436761
-
Regulation of tissue factor-mediated initiation of the coagulation cascade by cell surface grp78
-
Bhattacharjee G., Ahamed J., Pedersen B., El-Sheikh A., Mackman N., Ruf W., Liu C., Edgington T. Regulation of tissue factor-mediated initiation of the coagulation cascade by cell surface grp78. Arterioscler. Thromb. Vasc. Biol. 2005, 25:1737-1743. 10.1161/01.atv.0000173419.31242.56.
-
(2005)
Arterioscler. Thromb. Vasc. Biol.
, vol.25
, pp. 1737-1743
-
-
Bhattacharjee, G.1
Ahamed, J.2
Pedersen, B.3
El-Sheikh, A.4
Mackman, N.5
Ruf, W.6
Liu, C.7
Edgington, T.8
-
5
-
-
0035877820
-
Ikappa b-alpha, the NF-kappa B inhibitory subunit, interacts with ANT, the mitochondrial ATP/ADP translocator
-
Bottero V., Rossi F., Samson M., Mari M., Hofman P., Peyron J.F. Ikappa b-alpha, the NF-kappa B inhibitory subunit, interacts with ANT, the mitochondrial ATP/ADP translocator. J. Biol. Chem. 2001, 276:21317-21324. 10.1074/jbc.M005850200.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 21317-21324
-
-
Bottero, V.1
Rossi, F.2
Samson, M.3
Mari, M.4
Hofman, P.5
Peyron, J.F.6
-
6
-
-
12144289400
-
A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway
-
Bouwmeester T., Bauch A., Ruffner H., Angrand P.O., Bergamini G., Croughton K., Cruciat C., Eberhard D., Gagneur J., Ghidelli S., Hopf C., Huhse B., Mangano R., Michon A.M., Schirle M., Schlegl J., Schwab M., Stein M.A., Bauer A., Casari G., Drewes G., Gavin A.C., Jackson D.B., Joberty G., Neubauer G., Rick J., Kuster B., Superti-Furga G. A physical and functional map of the human TNF-alpha/NF-kappa B signal transduction pathway. Nat. Cell Biol. 2004, 6:97-105. 10.1038/ncb1086.
-
(2004)
Nat. Cell Biol.
, vol.6
, pp. 97-105
-
-
Bouwmeester, T.1
Bauch, A.2
Ruffner, H.3
Angrand, P.O.4
Bergamini, G.5
Croughton, K.6
Cruciat, C.7
Eberhard, D.8
Gagneur, J.9
Ghidelli, S.10
Hopf, C.11
Huhse, B.12
Mangano, R.13
Michon, A.M.14
Schirle, M.15
Schlegl, J.16
Schwab, M.17
Stein, M.A.18
Bauer, A.19
Casari, G.20
Drewes, G.21
Gavin, A.C.22
Jackson, D.B.23
Joberty, G.24
Neubauer, G.25
Rick, J.26
Kuster, B.27
Superti-Furga, G.28
more..
-
7
-
-
84872509120
-
Novel mechanism of apoptosis resistance in cancer mediated by extracellular PAR-4
-
Burikhanov R., Shrestha-Bhattarai T., Qiu S., Shukla N., Hebbar N., Lele S., Horbinski C., Rangnekar V. Novel mechanism of apoptosis resistance in cancer mediated by extracellular PAR-4. Cancer Res. 2013, 73:1011-1019. 10.1158/0008-5472.can-12-3212.
-
(2013)
Cancer Res.
, vol.73
, pp. 1011-1019
-
-
Burikhanov, R.1
Shrestha-Bhattarai, T.2
Qiu, S.3
Shukla, N.4
Hebbar, N.5
Lele, S.6
Horbinski, C.7
Rangnekar, V.8
-
8
-
-
0034661990
-
Role of oxidants in NF-kappa B activation and TNF-alpha gene transcription induced by hypoxia and endotoxin
-
Chandel N.S., Trzyna W.C., McClintock D.S., Schumacker P.T. Role of oxidants in NF-kappa B activation and TNF-alpha gene transcription induced by hypoxia and endotoxin. J. Immunol. 2000, 165:1013-1021.
-
(2000)
J. Immunol.
, vol.165
, pp. 1013-1021
-
-
Chandel, N.S.1
Trzyna, W.C.2
McClintock, D.S.3
Schumacker, P.T.4
-
9
-
-
0037155893
-
The non-ankyrin C terminus of Ikappa Balpha physically interacts with p53 in vivo and dissociates in response to apoptotic stress, hypoxia, DNA damage, and transforming growth factor-beta 1-mediated growth suppression
-
Chang N.S. The non-ankyrin C terminus of Ikappa Balpha physically interacts with p53 in vivo and dissociates in response to apoptotic stress, hypoxia, DNA damage, and transforming growth factor-beta 1-mediated growth suppression. J. Biol. Chem. 2002, 277:10323-10331. 10.1074/jbc.M106607200.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 10323-10331
-
-
Chang, N.S.1
-
10
-
-
0036187476
-
TNF-induced recruitment and activation of the IKK complex require Cdc37 and Hsp90
-
Chen G., Cao P., Goeddel D.V. TNF-induced recruitment and activation of the IKK complex require Cdc37 and Hsp90. Mol. Cell 2002, 9:401-410.
-
(2002)
Mol. Cell
, vol.9
, pp. 401-410
-
-
Chen, G.1
Cao, P.2
Goeddel, D.V.3
-
11
-
-
0036744969
-
Neuronal apoptosis induced by endoplasmic reticulum stress
-
Chen L., Gao X. Neuronal apoptosis induced by endoplasmic reticulum stress. Neurochem. Res. 2002, 27:891-898.
-
(2002)
Neurochem. Res.
, vol.27
, pp. 891-898
-
-
Chen, L.1
Gao, X.2
-
12
-
-
0034733621
-
Interaction of murine BiP/GRP78 with the DnaJ homologue MTJ1
-
Chevalier M., Rhee H., Elguindi E., Blond S. Interaction of murine BiP/GRP78 with the DnaJ homologue MTJ1. J.f Biol. Chem. 2000, 275:19620-19627. 10.1074/jbc.M001333200.
-
(2000)
J.f Biol. Chem.
, vol.275
, pp. 19620-19627
-
-
Chevalier, M.1
Rhee, H.2
Elguindi, E.3
Blond, S.4
-
13
-
-
23744503066
-
Tissue factor mediates inflammation
-
Chu A.J. Tissue factor mediates inflammation. Arch. Biochem. Biophys. 2005, 440:123-132. 10.1016/j.abb.2005.06.005.
-
(2005)
Arch. Biochem. Biophys.
, vol.440
, pp. 123-132
-
-
Chu, A.J.1
-
14
-
-
58149152509
-
DARS (decoys as the reference state) potentials for protein-protein docking
-
Chuang G.Y., Kozakov D., Brenke R., Comeau S.R., Vajda S. DARS (decoys as the reference state) potentials for protein-protein docking. Biophys. J. 2008, 95:4217-4227. 10.1529/biophysj.108.135814.
-
(2008)
Biophys. J.
, vol.95
, pp. 4217-4227
-
-
Chuang, G.Y.1
Kozakov, D.2
Brenke, R.3
Comeau, S.R.4
Vajda, S.5
-
15
-
-
77149136381
-
Calcium binding chaperones of the endoplasmic reticulum
-
(28 Spec No Focus)
-
Coe H., Michalak M. Calcium binding chaperones of the endoplasmic reticulum. Gen. Physiol. Biophys. 2009, F96-F103. (28 Spec No Focus).
-
(2009)
Gen. Physiol. Biophys.
-
-
Coe, H.1
Michalak, M.2
-
16
-
-
0345832301
-
ClusPro: an automated docking and discrimination method for the prediction of protein complexes
-
Comeau S.R., Gatchell D.W., Vajda S., Camacho C.J. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics 2004, 20:45-50.
-
(2004)
Bioinformatics
, vol.20
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.W.2
Vajda, S.3
Camacho, C.J.4
-
18
-
-
0037422401
-
Nicotine increases oxidative stress, activates NF-kappaB and GRP78, induces apoptosis and sensitizes cells to genotoxic/xenobiotic stresses by a multiple stress inducer, deoxycholate: relevance to colon carcinogenesis
-
Crowley-Weber C.L., Dvorakova K., Crowley C., Bernstein H., Bernstein C., Garewal H., Payne C.M. Nicotine increases oxidative stress, activates NF-kappaB and GRP78, induces apoptosis and sensitizes cells to genotoxic/xenobiotic stresses by a multiple stress inducer, deoxycholate: relevance to colon carcinogenesis. Chem. Biol. Interact. 2003, 145:53-66.
-
(2003)
Chem. Biol. Interact.
, vol.145
, pp. 53-66
-
-
Crowley-Weber, C.L.1
Dvorakova, K.2
Crowley, C.3
Bernstein, H.4
Bernstein, C.5
Garewal, H.6
Payne, C.M.7
-
19
-
-
48449100887
-
KFC Server: interactive forecasting of protein interaction hot spots
-
Darnell S.J., LeGault L., Mitchell J.C. KFC Server: interactive forecasting of protein interaction hot spots. Nucl. Acids Res. 2008, 36:W265-W269. 10.1093/nar/gkn346.
-
(2008)
Nucl. Acids Res.
, vol.36
-
-
Darnell, S.J.1
LeGault, L.2
Mitchell, J.C.3
-
21
-
-
84859762088
-
GRP78 protein expression in ovarian cancer patients and perspectives for a drug-targeting approach
-
Delie F., Petignat P., Cohen M. GRP78 protein expression in ovarian cancer patients and perspectives for a drug-targeting approach. J. Oncol. 2012, 2012:468615. 10.1155/2012/468615.
-
(2012)
J. Oncol.
, vol.2012
, pp. 468615
-
-
Delie, F.1
Petignat, P.2
Cohen, M.3
-
22
-
-
70349655093
-
Hsp27 inhibits IKKbeta-induced NF-kappaB activity and skeletal muscle atrophy
-
Dodd S.L., Hain B., Senf S.M., Judge A.R. Hsp27 inhibits IKKbeta-induced NF-kappaB activity and skeletal muscle atrophy. FASEB J. 2009, 23:3415-3423. 10.1096/fj.08-124602.
-
(2009)
FASEB J.
, vol.23
, pp. 3415-3423
-
-
Dodd, S.L.1
Hain, B.2
Senf, S.M.3
Judge, A.R.4
-
23
-
-
79954569520
-
A critical role for GRP78/BiP in the tumor microenvironment for neovascularization during tumor growth and metastasis
-
Dong D., Stapleton C., Luo B., Xiong S., Ye W., Zhang Y., Jhaveri N., Zhu G., Ye R., Liu Z., Bruhn K.W., Craft N., Groshen S., Hofman F.M., Lee A.S. A critical role for GRP78/BiP in the tumor microenvironment for neovascularization during tumor growth and metastasis. Cancer Res. 2011, 71:2848-2857. 10.1158/0008-5472.CAN-10-3151.
-
(2011)
Cancer Res.
, vol.71
, pp. 2848-2857
-
-
Dong, D.1
Stapleton, C.2
Luo, B.3
Xiong, S.4
Ye, W.5
Zhang, Y.6
Jhaveri, N.7
Zhu, G.8
Ye, R.9
Liu, Z.10
Bruhn, K.W.11
Craft, N.12
Groshen, S.13
Hofman, F.M.14
Lee, A.S.15
-
24
-
-
0027220391
-
Astrocytes are the primary source of tissue factor in the murine central nervous system. A role for astrocytes in cerebral hemostasis
-
Eddleston M., de la Torre J.C., Oldstone M.B., Loskutoff D.J., Edgington T.S., Mackman N. Astrocytes are the primary source of tissue factor in the murine central nervous system. A role for astrocytes in cerebral hemostasis. J. Clin. Invest. 1993, 92:349-358. 10.1172/JCI116573.
-
(1993)
J. Clin. Invest.
, vol.92
, pp. 349-358
-
-
Eddleston, M.1
de la Torre, J.C.2
Oldstone, M.B.3
Loskutoff, D.J.4
Edgington, T.S.5
Mackman, N.6
-
25
-
-
75549090603
-
The Pfam protein families database
-
Finn R.D., Mistry J., Tate J., Coggill P., Heger A., Pollington J.E., Gavin O.L., Gunasekaran P., Ceric G., Forslund K., Holm L., Sonnhammer E.L., Eddy S.R., Bateman A. The Pfam protein families database. Nucl. Acids Res. 2010, 38:D211-D222. 10.1093/nar/gkp985.
-
(2010)
Nucl. Acids Res.
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
26
-
-
0025073062
-
NF-kappa B, KBF1, dorsal, and related matters
-
Gilmore T.D. NF-kappa B, KBF1, dorsal, and related matters. Cell 1990, 62:841-843.
-
(1990)
Cell
, vol.62
, pp. 841-843
-
-
Gilmore, T.D.1
-
27
-
-
0029835628
-
Expression of tissue factor is increased in astrocytes within the central nervous system during persistent infection with borna disease virus
-
Gonzalez-Dunia D., Eddleston M., Mackman N., Carbone K., de la Torre J.C. Expression of tissue factor is increased in astrocytes within the central nervous system during persistent infection with borna disease virus. J. Virol. 1996, 70:5812-5820.
-
(1996)
J. Virol.
, vol.70
, pp. 5812-5820
-
-
Gonzalez-Dunia, D.1
Eddleston, M.2
Mackman, N.3
Carbone, K.4
de la Torre, J.C.5
-
28
-
-
68949209302
-
GRP78: a multifunctional receptor on the cell surface
-
Gonzalez-Gronow M., Selim M.A., Papalas J., Pizzo S.V. GRP78: a multifunctional receptor on the cell surface. Antioxid. Redox Signal 2009, 11:2299-2306. 10.1089/ARS.2009.2568.
-
(2009)
Antioxid. Redox Signal
, vol.11
, pp. 2299-2306
-
-
Gonzalez-Gronow, M.1
Selim, M.A.2
Papalas, J.3
Pizzo, S.V.4
-
29
-
-
65649115127
-
Regulation of HSP27 on NF-kappaB pathway activation may be involved in metastatic hepatocellular carcinoma cells apoptosis
-
Guo K., Kang N.X., Li Y., Sun L., Gan L., Cui F.J., Gao M.D., Liu K.Y. Regulation of HSP27 on NF-kappaB pathway activation may be involved in metastatic hepatocellular carcinoma cells apoptosis. BMC Cancer 2009, 9:100. 10.1186/1471-2407-9-100.
-
(2009)
BMC Cancer
, vol.9
, pp. 100
-
-
Guo, K.1
Kang, N.X.2
Li, Y.3
Sun, L.4
Gan, L.5
Cui, F.J.6
Gao, M.D.7
Liu, K.Y.8
-
30
-
-
0030747256
-
Major stress protein Hsp70 interacts with NF-kB regulatory complex in human T-lymphoma cells
-
Guzhova I.V., Darieva Z.A., Melo A.R., Margulis B.A. Major stress protein Hsp70 interacts with NF-kB regulatory complex in human T-lymphoma cells. Cell Stress Chaperones 1997, 2:132-139.
-
(1997)
Cell Stress Chaperones
, vol.2
, pp. 132-139
-
-
Guzhova, I.V.1
Darieva, Z.A.2
Melo, A.R.3
Margulis, B.A.4
-
31
-
-
38849199203
-
Shared principles in NF-kappaB signaling
-
Hayden M.S., Ghosh S. Shared principles in NF-kappaB signaling. Cell 2008, 132:344-362. 10.1016/j.cell.2008.01.020.
-
(2008)
Cell
, vol.132
, pp. 344-362
-
-
Hayden, M.S.1
Ghosh, S.2
-
32
-
-
46249092554
-
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation
-
Hess B., Kutzner C., Spoel D., Lindahl E. GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 2008, 4:435-447.
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Spoel, D.3
Lindahl, E.4
-
33
-
-
36148967696
-
Signal responsiveness of IkappaB kinases is determined by Cdc37-assisted transient interaction with Hsp90
-
Hinz M., Broemer M., Arslan S.C., Otto A., Mueller E.C., Dettmer R., Scheidereit C. Signal responsiveness of IkappaB kinases is determined by Cdc37-assisted transient interaction with Hsp90. J. Biol. Chem. 2007, 282:32311-32319. 10.1074/jbc.M705785200.
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 32311-32319
-
-
Hinz, M.1
Broemer, M.2
Arslan, S.C.3
Otto, A.4
Mueller, E.C.5
Dettmer, R.6
Scheidereit, C.7
-
34
-
-
77950343252
-
Endoplasmic reticulum stress and the inflammatory basis of metabolic disease
-
Hotamisligil G. Endoplasmic reticulum stress and the inflammatory basis of metabolic disease. Cell 2010, 140:900-917. 10.1016/j.cell.2010.02.034.
-
(2010)
Cell
, vol.140
, pp. 900-917
-
-
Hotamisligil, G.1
-
35
-
-
0032217268
-
The crystal structure of the IkappaBalpha/NF-kappaB complex reveals mechanisms of NF-kappaB inactivation
-
Huxford T., Huang D., Malek S., Ghosh G. The crystal structure of the IkappaBalpha/NF-kappaB complex reveals mechanisms of NF-kappaB inactivation. Cell 1998, 95:759-770.
-
(1998)
Cell
, vol.95
, pp. 759-770
-
-
Huxford, T.1
Huang, D.2
Malek, S.3
Ghosh, G.4
-
36
-
-
78650871053
-
Small molecule inhibitors of NF-kB and JAK/STAT signal transduction pathways as promising anti-inflammatory therapeutics
-
Ivanenkov Y.A., Balakin K.V., Lavrovsky Y. Small molecule inhibitors of NF-kB and JAK/STAT signal transduction pathways as promising anti-inflammatory therapeutics. Mini. Rev. Med. Chem. 2011, 11:55-78.
-
(2011)
Mini. Rev. Med. Chem.
, vol.11
, pp. 55-78
-
-
Ivanenkov, Y.A.1
Balakin, K.V.2
Lavrovsky, Y.3
-
37
-
-
33748754549
-
Suppression of NF-kappaB activation by Entamoeba histolytica in intestinal epithelial cells is mediated by heat shock protein 27
-
Kammanadiminti S.J., Chadee K. Suppression of NF-kappaB activation by Entamoeba histolytica in intestinal epithelial cells is mediated by heat shock protein 27. J. Biol. Chem. 2006, 281:26112-26120. 10.1074/jbc.M601988200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 26112-26120
-
-
Kammanadiminti, S.J.1
Chadee, K.2
-
38
-
-
0034084163
-
Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity
-
Karin M., Ben-Neriah Y. Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity. Annu. Rev. Immunol. 2000, 18:621-663. 10.1146/annurev.immunol.18.1.621.
-
(2000)
Annu. Rev. Immunol.
, vol.18
, pp. 621-663
-
-
Karin, M.1
Ben-Neriah, Y.2
-
39
-
-
84873110577
-
Inhibition of endoplasmic reticulum stress alleviates lipopolysaccharide-induced lung inflammation through modulation of NF-κB/HIF-1α signaling pathway
-
Kim H., Jeong J., Kim S., Park S., Chae H., Lee Y. Inhibition of endoplasmic reticulum stress alleviates lipopolysaccharide-induced lung inflammation through modulation of NF-κB/HIF-1α signaling pathway. Sci. Rep. 2013, 3:1142. 10.1038/srep01142.
-
(2013)
Sci. Rep.
, vol.3
, pp. 1142
-
-
Kim, H.1
Jeong, J.2
Kim, S.3
Park, S.4
Chae, H.5
Lee, Y.6
-
40
-
-
0037161268
-
Catalytic mechanism of enzymes: preorganization, short strong hydrogen bond, and charge buffering
-
Kim K.S., Kim D., Lee J.Y., Tarakeshwar P., Oh K.S. Catalytic mechanism of enzymes: preorganization, short strong hydrogen bond, and charge buffering. Biochemistry 2002, 41:5300-5306.
-
(2002)
Biochemistry
, vol.41
, pp. 5300-5306
-
-
Kim, K.S.1
Kim, D.2
Lee, J.Y.3
Tarakeshwar, P.4
Oh, K.S.5
-
41
-
-
31444449462
-
Role of the unfolded protein response in cell death
-
Kim R., Emi M., Tanabe K., Murakami S. Role of the unfolded protein response in cell death. Apoptosis: Int. J. Program. Cell Death 2006, 11:5-13. 10.1007/s10495-005-3088-0.
-
(2006)
Apoptosis: Int. J. Program. Cell Death
, vol.11
, pp. 5-13
-
-
Kim, R.1
Emi, M.2
Tanabe, K.3
Murakami, S.4
-
42
-
-
84855371108
-
Inflammation, endoplasmic reticulum stress, autophagy, and the monocyte chemoattractant protein-1/CCR2 pathway
-
Kolattukudy P., Niu J. Inflammation, endoplasmic reticulum stress, autophagy, and the monocyte chemoattractant protein-1/CCR2 pathway. Circ. Res. 2012, 110:174-189. 10.1161/circresaha.111.243212.
-
(2012)
Circ. Res.
, vol.110
, pp. 174-189
-
-
Kolattukudy, P.1
Niu, J.2
-
43
-
-
47349119911
-
Discrimination of near-native structures in protein-protein docking by testing the stability of local minima
-
Kozakov D., Schueler-Furman O., Vajda S. Discrimination of near-native structures in protein-protein docking by testing the stability of local minima. Proteins 2008, 72:993-1004. 10.1002/prot.21997.
-
(2008)
Proteins
, vol.72
, pp. 993-1004
-
-
Kozakov, D.1
Schueler-Furman, O.2
Vajda, S.3
-
44
-
-
23244436580
-
Optimal clustering for detecting near-native conformations in protein docking
-
Kozakov D., Clodfelter K.H., Vajda S., Camacho C.J. Optimal clustering for detecting near-native conformations in protein docking. Biophys. J. 2005, 89:867-875. 10.1529/biophysj.104.058768.
-
(2005)
Biophys. J.
, vol.89
, pp. 867-875
-
-
Kozakov, D.1
Clodfelter, K.H.2
Vajda, S.3
Camacho, C.J.4
-
45
-
-
33749020839
-
PIPER: an FFT-based protein docking program with pairwise potentials
-
Kozakov D., Brenke R., Comeau S.R., Vajda S. PIPER: an FFT-based protein docking program with pairwise potentials. Proteins 2006, 65:392-406. 10.1002/prot.21117.
-
(2006)
Proteins
, vol.65
, pp. 392-406
-
-
Kozakov, D.1
Brenke, R.2
Comeau, S.R.3
Vajda, S.4
-
46
-
-
77957963055
-
Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19
-
Kozakov D., Hall D.R., Beglov D., Brenke R., Comeau S.R., Shen Y., Li K., Zheng J., Vakili P., Paschalidis I., Vajda S. Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins 2010, 78:3124-3130. 10.1002/prot.22835.
-
(2010)
Proteins
, vol.78
, pp. 3124-3130
-
-
Kozakov, D.1
Hall, D.R.2
Beglov, D.3
Brenke, R.4
Comeau, S.R.5
Shen, Y.6
Li, K.7
Zheng, J.8
Vakili, P.9
Paschalidis, I.10
Vajda, S.11
-
47
-
-
80054911951
-
LigPlot+: multiple ligand-protein interaction diagrams for drug discovery
-
Laskowski R.A., Swindells M.B. LigPlot+: multiple ligand-protein interaction diagrams for drug discovery. J. Chem. Inf. Model 2011, 51:2778-2786. 10.1021/ci200227u.
-
(2011)
J. Chem. Inf. Model
, vol.51
, pp. 2778-2786
-
-
Laskowski, R.A.1
Swindells, M.B.2
-
48
-
-
18744394070
-
Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites
-
Laurie A.T., Jackson R.M. Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites. Bioinformatics 2005, 21:1908-1916. 10.1093/bioinformatics/bti315.
-
(2005)
Bioinformatics
, vol.21
, pp. 1908-1916
-
-
Laurie, A.T.1
Jackson, R.M.2
-
49
-
-
33748076770
-
GRP78 as a novel predictor of responsiveness to chemotherapy in breast cancer
-
Lee E., Nichols P., Spicer D., Groshen S., Yu M., Lee A. GRP78 as a novel predictor of responsiveness to chemotherapy in breast cancer. Cancer Res. 2006, 66:7849-7853. 10.1158/0008-5472.can-06-1660.
-
(2006)
Cancer Res.
, vol.66
, pp. 7849-7853
-
-
Lee, E.1
Nichols, P.2
Spicer, D.3
Groshen, S.4
Yu, M.5
Lee, A.6
-
50
-
-
52749086261
-
Inhibitor design for human heat shock protein 70 ATPase domain by pharmacophore-based in silico screening
-
Lee J.-Y., Jung K.-W., Kim Y. Inhibitor design for human heat shock protein 70 ATPase domain by pharmacophore-based in silico screening. Bull. Korean Chem. Soc. 2008, 29:1717.
-
(2008)
Bull. Korean Chem. Soc.
, vol.29
, pp. 1717
-
-
Lee, J.-Y.1
Jung, K.-W.2
Kim, Y.3
-
51
-
-
0025266522
-
The v-rel oncogene product is complexed with cellular proteins including its proto-oncogene product and heat shock protein 70
-
Lim M.Y., Davis N., Zhang J.Y., Bose H.R. The v-rel oncogene product is complexed with cellular proteins including its proto-oncogene product and heat shock protein 70. Virology 1990, 175:149-160.
-
(1990)
Virology
, vol.175
, pp. 149-160
-
-
Lim, M.Y.1
Davis, N.2
Zhang, J.Y.3
Bose, H.R.4
-
52
-
-
84864484497
-
Endoplasmic reticulum stress stimulates p53 expression through NF-κB activation
-
Lin W.-C., Chuang Y.-C., Chang Y.-S., Lai M.-D., Teng Y.-N., Su I.-J., Wang C.C., Lee K.-H., Hung J.-H. Endoplasmic reticulum stress stimulates p53 expression through NF-κB activation. PloS One 2012, 7. 10.1371/journal.pone.0039120.
-
(2012)
PloS One
, vol.7
-
-
Lin, W.-C.1
Chuang, Y.-C.2
Chang, Y.-S.3
Lai, M.-D.4
Teng, Y.-N.5
Su, I.-J.6
Wang, C.C.7
Lee, K.-H.8
Hung, J.-H.9
-
53
-
-
77953223063
-
The endothelial cell receptor GRP78 is required for mucormycosis pathogenesis in diabetic mice
-
Liu M., Spellberg B., Phan Q.T., Fu Y., Lee A.S., Edwards J.E., Filler S.G., Ibrahim A.S. The endothelial cell receptor GRP78 is required for mucormycosis pathogenesis in diabetic mice. J. Clin. Invest. 2010, 120:1914-1924. 10.1172/JCI42164.
-
(2010)
J. Clin. Invest.
, vol.120
, pp. 1914-1924
-
-
Liu, M.1
Spellberg, B.2
Phan, Q.T.3
Fu, Y.4
Lee, A.S.5
Edwards, J.E.6
Filler, S.G.7
Ibrahim, A.S.8
-
54
-
-
79959476814
-
Adenosine-derived inhibitors of 78kDa glucose regulated protein (Grp78) ATPase: insights into isoform selectivity
-
Macias A.T., Williamson D.S., Allen N., Borgognoni J., Clay A., Daniels Z., Dokurno P., Drysdale M.J., Francis G.L., Graham C.J., Howes R., Matassova N., Murray J.B., Parsons R., Shaw T., Surgenor A.E., Terry L., Wang Y., Wood M., Massey A.J. Adenosine-derived inhibitors of 78kDa glucose regulated protein (Grp78) ATPase: insights into isoform selectivity. J. Med. Chem. 2011, 54:4034-4041. 10.1021/jm101625x.
-
(2011)
J. Med. Chem.
, vol.54
, pp. 4034-4041
-
-
Macias, A.T.1
Williamson, D.S.2
Allen, N.3
Borgognoni, J.4
Clay, A.5
Daniels, Z.6
Dokurno, P.7
Drysdale, M.J.8
Francis, G.L.9
Graham, C.J.10
Howes, R.11
Matassova, N.12
Murray, J.B.13
Parsons, R.14
Shaw, T.15
Surgenor, A.E.16
Terry, L.17
Wang, Y.18
Wood, M.19
Massey, A.J.20
more..
-
55
-
-
84875445608
-
CDD: conserved domains and protein three-dimensional structure
-
Marchler-Bauer A., Zheng C., Chitsaz F., Derbyshire M.K., Geer L.Y., Geer R.C., Gonzales N.R., Gwadz M., Hurwitz D.I., Lanczycki C.J., Lu F., Lu S., Marchler G.H., Song J.S., Thanki N., Yamashita R.A., Zhang D., Bryant S.H. CDD: conserved domains and protein three-dimensional structure. Nucl. Acids Res. 2013, 41:D348-D352. 10.1093/nar/gks1243.
-
(2013)
Nucl. Acids Res.
, vol.41
-
-
Marchler-Bauer, A.1
Zheng, C.2
Chitsaz, F.3
Derbyshire, M.K.4
Geer, L.Y.5
Geer, R.C.6
Gonzales, N.R.7
Gwadz, M.8
Hurwitz, D.I.9
Lanczycki, C.J.10
Lu, F.11
Lu, S.12
Marchler, G.H.13
Song, J.S.14
Thanki, N.15
Yamashita, R.A.16
Zhang, D.17
Bryant, S.H.18
-
56
-
-
0030048070
-
Protein-protein interactions in the rigor actomyosin complex
-
Milligan R.A. Protein-protein interactions in the rigor actomyosin complex. Proc. Natl. Acad. Sci. U.S.A. 1996, 93:21-26.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 21-26
-
-
Milligan, R.A.1
-
57
-
-
33744962234
-
Activation and cross-talk between Akt, NF-kappaB, and unfolded protein response signaling in 1-LN prostate cancer cells consequent to ligation of cell surface-associated GRP78
-
Misra U., Deedwania R., Pizzo S. Activation and cross-talk between Akt, NF-kappaB, and unfolded protein response signaling in 1-LN prostate cancer cells consequent to ligation of cell surface-associated GRP78. J. Biol. Chem. 2006, 281:13694-13707. 10.1074/jbc.M511694200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 13694-13707
-
-
Misra, U.1
Deedwania, R.2
Pizzo, S.3
-
58
-
-
85046915739
-
Ligation of cell surface GRP78 with antibody directed against the COOH-terminal domain of GRP78 suppresses Ras/MAPK and PI 3-kinase/AKT signaling while promoting caspase activation in human prostate cancer cells
-
Misra U.K., Pizzo S.V. Ligation of cell surface GRP78 with antibody directed against the COOH-terminal domain of GRP78 suppresses Ras/MAPK and PI 3-kinase/AKT signaling while promoting caspase activation in human prostate cancer cells. Cancer Biol. Ther. 2010, 9:142-152.
-
(2010)
Cancer Biol. Ther.
, vol.9
, pp. 142-152
-
-
Misra, U.K.1
Pizzo, S.V.2
-
59
-
-
78651388262
-
Ligation of prostate cancer cell surface GRP78 activates a proproliferative and antiapoptotic feedback loop: a role for secreted prostate-specific antigen
-
Misra U.K., Payne S., Pizzo S.V. Ligation of prostate cancer cell surface GRP78 activates a proproliferative and antiapoptotic feedback loop: a role for secreted prostate-specific antigen. J. Biol. Chem. 2011, 286:1248-1259. 10.1074/jbc.M110.129767.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 1248-1259
-
-
Misra, U.K.1
Payne, S.2
Pizzo, S.V.3
-
60
-
-
2442706456
-
The ankyrin repeat as molecular architecture for protein recognition
-
Mosavi L.K., Cammett T.J., Desrosiers D.C., Peng Z.Y. The ankyrin repeat as molecular architecture for protein recognition. Protein Sci. 2004, 13:1435-1448. 10.1110/ps.03554604.
-
(2004)
Protein Sci.
, vol.13
, pp. 1435-1448
-
-
Mosavi, L.K.1
Cammett, T.J.2
Desrosiers, D.C.3
Peng, Z.Y.4
-
61
-
-
79953146630
-
Selective abrogation of BiP/GRP78 blunts activation of NF-κB through the ATF6 branch of the UPR: involvement of C/EBPβ and mTOR-dependent dephosphorylation of Akt
-
Nakajima S., Hiramatsu N., Hayakawa K., Saito Y., Kato H., Huang T., Yao J., Paton A., Paton J., Kitamura M. Selective abrogation of BiP/GRP78 blunts activation of NF-κB through the ATF6 branch of the UPR: involvement of C/EBPβ and mTOR-dependent dephosphorylation of Akt. Mol. Cell. Biol. 2011, 31:1710-1718. 10.1128/mcb.00939-10.
-
(2011)
Mol. Cell. Biol.
, vol.31
, pp. 1710-1718
-
-
Nakajima, S.1
Hiramatsu, N.2
Hayakawa, K.3
Saito, Y.4
Kato, H.5
Huang, T.6
Yao, J.7
Paton, A.8
Paton, J.9
Kitamura, M.10
-
62
-
-
0030267033
-
Modulation of protein structure and function by asparagine-linked glycosylation
-
O'Connor S.E., Imperiali B. Modulation of protein structure and function by asparagine-linked glycosylation. Chem. Biol. 1996, 3:803-812.
-
(1996)
Chem. Biol.
, vol.3
, pp. 803-812
-
-
O'Connor, S.E.1
Imperiali, B.2
-
63
-
-
84858005054
-
MiR-181 targets multiple Bcl-2 family members and influences apoptosis and mitochondrial function in astrocytes
-
Ouyang Y.B., Lu Y., Yue S., Giffard R.G. miR-181 targets multiple Bcl-2 family members and influences apoptosis and mitochondrial function in astrocytes. Mitochondrion 2012, 12:213-219. 10.1016/j.mito.2011.09.001.
-
(2012)
Mitochondrion
, vol.12
, pp. 213-219
-
-
Ouyang, Y.B.1
Lu, Y.2
Yue, S.3
Giffard, R.G.4
-
64
-
-
81955161912
-
MiR-181 regulates GRP78 and influences outcome from cerebral ischemia in vitro and in vivo
-
Ouyang Y.B., Lu Y., Yue S., Xu L.J., Xiong X.X., White R.E., Sun X., Giffard R.G. miR-181 regulates GRP78 and influences outcome from cerebral ischemia in vitro and in vivo. Neurobiol. Dis. 2012, 45:555-563. 10.1016/j.nbd.2011.09.012.
-
(2012)
Neurobiol. Dis.
, vol.45
, pp. 555-563
-
-
Ouyang, Y.B.1
Lu, Y.2
Yue, S.3
Xu, L.J.4
Xiong, X.X.5
White, R.E.6
Sun, X.7
Giffard, R.G.8
-
65
-
-
0030603101
-
Activation of NF-kappa B by ER stress requires both Ca2+ and reactive oxygen intermediates as messengers
-
Pahl H.L., Baeuerle P.A. Activation of NF-kappa B by ER stress requires both Ca2+ and reactive oxygen intermediates as messengers. FEBS Lett. 1996, 392:129-136.
-
(1996)
FEBS Lett.
, vol.392
, pp. 129-136
-
-
Pahl, H.L.1
Baeuerle, P.A.2
-
66
-
-
0031081340
-
The ER-overload response: activation of NF-kappa B
-
Pahl H.L., Baeuerle P.A. The ER-overload response: activation of NF-kappa B. Trends Biochem. Sci. 1997, 22:63-67.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 63-67
-
-
Pahl, H.L.1
Baeuerle, P.A.2
-
67
-
-
3042737016
-
Stress cytokines: pivotal proteins in immune regulatory networks; opinion
-
Panayi G.S., Corrigall V.M., Henderson B. Stress cytokines: pivotal proteins in immune regulatory networks; opinion. Curr. Opin. Immunol. 2004, 16:531-534. 10.1016/j.coi.2004.05.017.
-
(2004)
Curr. Opin. Immunol.
, vol.16
, pp. 531-534
-
-
Panayi, G.S.1
Corrigall, V.M.2
Henderson, B.3
-
68
-
-
0041816199
-
Heat shock protein 27 association with the I kappa B kinase complex regulates tumor necrosis factor alpha-induced NF-kappa B activation
-
Park K.J., Gaynor R.B., Kwak Y.T. Heat shock protein 27 association with the I kappa B kinase complex regulates tumor necrosis factor alpha-induced NF-kappa B activation. J. Biol. Chem. 2003, 278:35272-35278. 10.1074/jbc.M305095200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 35272-35278
-
-
Park, K.J.1
Gaynor, R.B.2
Kwak, Y.T.3
-
69
-
-
84903445250
-
Crosstalk between endoplasmic reticulum stress and protein misfolding in neurodegenerative diseases
-
Pereira C. Crosstalk between endoplasmic reticulum stress and protein misfolding in neurodegenerative diseases. ISRN Cell Biol. 2013, 2013. 10.1155/2013/256404.
-
(2013)
ISRN Cell Biol.
, pp. 2013
-
-
Pereira, C.1
-
70
-
-
0035813203
-
Elevated calcium in preneoplastic cells activates NF-kappa B and confers resistance to apoptosis
-
Petranka J., Wright G., Forbes R.A., Murphy E. Elevated calcium in preneoplastic cells activates NF-kappa B and confers resistance to apoptosis. J. Biol. Chem. 2001, 276:37102-37108. 10.1074/jbc.M008448200.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 37102-37108
-
-
Petranka, J.1
Wright, G.2
Forbes, R.A.3
Murphy, E.4
-
71
-
-
58149109602
-
GRP78: a chaperone with diverse roles beyond the endoplasmic reticulum
-
Quinones Q., de Ridder G., Pizzo S. GRP78: a chaperone with diverse roles beyond the endoplasmic reticulum. Histol. Histopathol. 2008, 23:1409-1416.
-
(2008)
Histol. Histopathol.
, vol.23
, pp. 1409-1416
-
-
Quinones, Q.1
de Ridder, G.2
Pizzo, S.3
-
72
-
-
18344388462
-
Coupling endoplasmic reticulum stress to the cell death program: role of the ER chaperone GRP78
-
Rao R., Peel A., Logvinova A., del Rio G., Hermel E., Yokota T., Goldsmith P., Ellerby L., Ellerby H., Bredesen D. Coupling endoplasmic reticulum stress to the cell death program: role of the ER chaperone GRP78. FEBS Lett. 2002, 514:122-128.
-
(2002)
FEBS Lett.
, vol.514
, pp. 122-128
-
-
Rao, R.1
Peel, A.2
Logvinova, A.3
del Rio, G.4
Hermel, E.5
Yokota, T.6
Goldsmith, P.7
Ellerby, L.8
Ellerby, H.9
Bredesen, D.10
-
73
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual J.F., Venkatesan K., Hao T., Hirozane-Kishikawa T., Dricot A., Li N., Berriz G.F., Gibbons F.D., Dreze M., Ayivi-Guedehoussou N., Klitgord N., Simon C., Boxem M., Milstein S., Rosenberg J., Goldberg D.S., Zhang L.V., Wong S.L., Franklin G., Li S., Albala J.S., Lim J., Fraughton C., Llamosas E., Cevik S., Bex C., Lamesch P., Sikorski R.S., Vandenhaute J., Zoghbi H.Y., Smolyar A., Bosak S., Sequerra R., Doucette-Stamm L., Cusick M.E., Hill D.E., Roth F.P., Vidal M. Towards a proteome-scale map of the human protein-protein interaction network. Nature 2005, 437:1173-1178. 10.1038/nature04209.
-
(2005)
Nature
, vol.437
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
74
-
-
33746276951
-
ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces
-
Saha R.P., Bahadur R.P., Pal A., Mandal S., Chakrabarti P. ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces. BMC Struct. Biol. 2006, 6:11. 10.1186/1472-6807-6-11.
-
(2006)
BMC Struct. Biol.
, vol.6
, pp. 11
-
-
Saha, R.P.1
Bahadur, R.P.2
Pal, A.3
Mandal, S.4
Chakrabarti, P.5
-
75
-
-
55449101982
-
Protein docking by the underestimation of free energy funnels in the space of encounter complexes
-
Shen Y., Paschalidis I., Vakili P., Vajda S. Protein docking by the underestimation of free energy funnels in the space of encounter complexes. PLoS Comput. Biol. 2008, 4:e1000191. 10.1371/journal.pcbi.1000191.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Shen, Y.1
Paschalidis, I.2
Vakili, P.3
Vajda, S.4
-
76
-
-
79960990849
-
Resolution-associated molecular patterns (RAMP): RAMParts defending immunological homeostasis?
-
Shields A.M., Panayi G.S., Corrigall V.M. Resolution-associated molecular patterns (RAMP): RAMParts defending immunological homeostasis?. Clin. Exp. Immunol. 2011, 165:292-300. 10.1111/j.1365-2249.2011.04433.x.
-
(2011)
Clin. Exp. Immunol.
, vol.165
, pp. 292-300
-
-
Shields, A.M.1
Panayi, G.S.2
Corrigall, V.M.3
-
77
-
-
84872169075
-
A new-age for biologic therapies: long-term drug-free therapy with BiP?
-
Shields A.M., Panayi G.S., Corrigall V.M. A new-age for biologic therapies: long-term drug-free therapy with BiP?. Front. Immunol. 2012, 3:17. 10.3389/fimmu.2012.00017.
-
(2012)
Front. Immunol.
, vol.3
, pp. 17
-
-
Shields, A.M.1
Panayi, G.S.2
Corrigall, V.M.3
-
78
-
-
77958451843
-
Interaction of arginine with proteins and the mechanism by which it inhibits aggregation
-
Shukla D., Trout B.L. Interaction of arginine with proteins and the mechanism by which it inhibits aggregation. J. Phys. Chem. B 2010, 114:13426-13438. 10.1021/jp108399g.
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 13426-13438
-
-
Shukla, D.1
Trout, B.L.2
-
79
-
-
84876588470
-
New and continuing developments at PROSITE
-
Sigrist C.J., de Castro E., Cerutti L., Cuche B.A., Hulo N., Bridge A., Bougueleret L., Xenarios I. New and continuing developments at PROSITE. Nucl. Acids Res. 2013, 41:D344-D347. 10.1093/nar/gks1067.
-
(2013)
Nucl. Acids Res.
, vol.41
-
-
Sigrist, C.J.1
de Castro, E.2
Cerutti, L.3
Cuche, B.A.4
Hulo, N.5
Bridge, A.6
Bougueleret, L.7
Xenarios, I.8
-
80
-
-
84863610879
-
A study on the effect of surface lysine to arginine mutagenesis on protein stability and structure using green fluorescent protein
-
Sokalingam S., Raghunathan G., Soundrarajan N., Lee S.G. A study on the effect of surface lysine to arginine mutagenesis on protein stability and structure using green fluorescent protein. PLoS One 2012, 7:e40410. 10.1371/journal.pone.0040410.
-
(2012)
PLoS One
, vol.7
-
-
Sokalingam, S.1
Raghunathan, G.2
Soundrarajan, N.3
Lee, S.G.4
-
81
-
-
0031587297
-
Hydrogen bonding interactions between glutamine and asparagine in alpha-helical peptides
-
Stapley B.J., Doig A.J. Hydrogen bonding interactions between glutamine and asparagine in alpha-helical peptides. J. Mol. Biol. 1997, 272:465-473. 10.1006/jmbi.1997.1262.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 465-473
-
-
Stapley, B.J.1
Doig, A.J.2
-
82
-
-
77955199612
-
Heat shock proteins: cellular and molecular mechanisms in the central nervous system
-
Stetler R.A., Gan Y., Zhang W., Liou A.K., Gao Y., Cao G., Chen J. Heat shock proteins: cellular and molecular mechanisms in the central nervous system. Prog. Neurobiol. 2010, 92:184-211. 10.1016/j.pneurobio.2010.05.002.
-
(2010)
Prog. Neurobiol.
, vol.92
, pp. 184-211
-
-
Stetler, R.A.1
Gan, Y.2
Zhang, W.3
Liou, A.K.4
Gao, Y.5
Cao, G.6
Chen, J.7
-
83
-
-
0037189502
-
A small molecule ubiquitination inhibitor blocks NF-kappa B-dependent cytokine expression in cells and rats
-
Swinney D.C., Xu Y.Z., Scarafia L.E., Lee I., Mak A.Y., Gan Q.F., Ramesha C.S., Mulkins M.A., Dunn J., So O.Y., Biegel T., Dinh M., Volkel P., Barnett J., Dalrymple S.A., Lee S., Huber M. A small molecule ubiquitination inhibitor blocks NF-kappa B-dependent cytokine expression in cells and rats. J. Biol. Chem. 2002, 277:23573-23581. 10.1074/jbc.M200842200.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 23573-23581
-
-
Swinney, D.C.1
Xu, Y.Z.2
Scarafia, L.E.3
Lee, I.4
Mak, A.Y.5
Gan, Q.F.6
Ramesha, C.S.7
Mulkins, M.A.8
Dunn, J.9
So, O.Y.10
Biegel, T.11
Dinh, M.12
Volkel, P.13
Barnett, J.14
Dalrymple, S.A.15
Lee, S.16
Huber, M.17
-
84
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk D., Franceschini A., Kuhn M., Simonovic M., Roth A., Minguez P., Doerks T., Stark M., Muller J., Bork P., Jensen L.J., Mering C.v. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucl. Acids Res. 2011, 39:D561-D568. 10.1093/nar/gkq973.
-
(2011)
Nucl. Acids Res.
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
Jensen, L.J.11
Mering, C.12
-
85
-
-
84868130018
-
ER stress activates NF-κB by integrating functions of basal IKK activity, IRE1 and PERK
-
Tam A., Mercado E., Hoffmann A., Niwa M. ER stress activates NF-κB by integrating functions of basal IKK activity, IRE1 and PERK. PloS One 2012, 7. 10.1371/journal.pone.0045078.
-
(2012)
PloS One
, vol.7
-
-
Tam, A.1
Mercado, E.2
Hoffmann, A.3
Niwa, M.4
-
86
-
-
0028879305
-
Analysis of the loop-helix interaction in bundle motif protein structures
-
Thompson T.B., Chou K.C., Zheng C. Analysis of the loop-helix interaction in bundle motif protein structures. J. Protein Chem. 1995, 14:559-566.
-
(1995)
J. Protein Chem.
, vol.14
, pp. 559-566
-
-
Thompson, T.B.1
Chou, K.C.2
Zheng, C.3
-
87
-
-
84857706271
-
Charting the NF-κB pathway interactome map
-
Tieri P., Termanini A., Bellavista E., Salvioli S., Capri M., Franceschi C. Charting the NF-κB pathway interactome map. PloS One 2012, 7. 10.1371/journal.pone.0032678.
-
(2012)
PloS One
, vol.7
-
-
Tieri, P.1
Termanini, A.2
Bellavista, E.3
Salvioli, S.4
Capri, M.5
Franceschi, C.6
-
88
-
-
68949202516
-
Role of the unfolded protein response regulator GRP78/BiP in development, cancer, and neurological disorders
-
Wang M., Wey S., Zhang Y., Ye R., Lee A.S. Role of the unfolded protein response regulator GRP78/BiP in development, cancer, and neurological disorders. Antioxid. Redox Signal 2009, 11:2307-2316. 10.1089/ARS.2009.2485.
-
(2009)
Antioxid. Redox Signal
, vol.11
, pp. 2307-2316
-
-
Wang, M.1
Wey, S.2
Zhang, Y.3
Ye, R.4
Lee, A.S.5
-
89
-
-
76749151327
-
Essential role of the unfolded protein response regulator GRP78/BiP in protection from neuronal apoptosis
-
Wang M., Ye R., Barron E., Baumeister P., Mao C., Luo S., Fu Y., Luo B., Dubeau L., Hinton D.R., Lee A.S. Essential role of the unfolded protein response regulator GRP78/BiP in protection from neuronal apoptosis. Cell Death Differ. 2010, 17:488-498. 10.1038/cdd.2009.144.
-
(2010)
Cell Death Differ.
, vol.17
, pp. 488-498
-
-
Wang, M.1
Ye, R.2
Barron, E.3
Baumeister, P.4
Mao, C.5
Luo, S.6
Fu, Y.7
Luo, B.8
Dubeau, L.9
Hinton, D.R.10
Lee, A.S.11
-
90
-
-
0036884573
-
Prostaglandin A1 inhibits rotenone-induced apoptosis in SH-SY5Y cells
-
Xiaoxia W., Zheng-Hong Q., Yan L., Yumei W., Xiannu J., Thomas N.C., Bennett M.C. Prostaglandin A1 inhibits rotenone-induced apoptosis in SH-SY5Y cells. J. Neurochem. 2002, 83. 10.1046/j.1471-4159.2002.01224.x.
-
(2002)
J. Neurochem.
, pp. 83
-
-
Xiaoxia, W.1
Zheng-Hong, Q.2
Yan, L.3
Yumei, W.4
Xiannu, J.5
Thomas, N.C.6
Bennett, M.C.7
-
91
-
-
84863527275
-
Hydrogen sulfide protects SH-SY5Y cells against 6-hydroxydopamine-induced endoplasmic reticulum stress
-
Xie L., Tiong C.X., Bian J.S. Hydrogen sulfide protects SH-SY5Y cells against 6-hydroxydopamine-induced endoplasmic reticulum stress. Am. J. Physiol. Cell. Physiol. 2012, 303:C81-C91. 10.1152/ajpcell.00281.2011.
-
(2012)
Am. J. Physiol. Cell. Physiol.
, vol.303
-
-
Xie, L.1
Tiong, C.X.2
Bian, J.S.3
-
92
-
-
69849109361
-
Activation of the Akt-NF-kappaB pathway by subtilase cytotoxin through the ATF6 branch of the unfolded protein response
-
(Baltimore, Md.: 1950)
-
Yamazaki H., Hiramatsu N., Hayakawa K., Tagawa Y., Okamura M., Ogata R., Huang T., Nakajima S., Yao J., Paton A., Paton J., Kitamura M. Activation of the Akt-NF-kappaB pathway by subtilase cytotoxin through the ATF6 branch of the unfolded protein response. J. Immunol. 2009, 183:1480-1487. (Baltimore, Md.: 1950). 10.4049/jimmunol.0900017.
-
(2009)
J. Immunol.
, vol.183
, pp. 1480-1487
-
-
Yamazaki, H.1
Hiramatsu, N.2
Hayakawa, K.3
Tagawa, Y.4
Okamura, M.5
Ogata, R.6
Huang, T.7
Nakajima, S.8
Yao, J.9
Paton, A.10
Paton, J.11
Kitamura, M.12
-
93
-
-
80052177927
-
Structural analysis of the Sil1-Bip complex reveals the mechanism for Sil1 to function as a nucleotide-exchange factor
-
Yan M., Li J., Sha B. Structural analysis of the Sil1-Bip complex reveals the mechanism for Sil1 to function as a nucleotide-exchange factor. Biochem. J. 2011, 438:447-455. 10.1042/bj20110500.
-
(2011)
Biochem. J.
, vol.438
, pp. 447-455
-
-
Yan, M.1
Li, J.2
Sha, B.3
-
94
-
-
79958142867
-
Homology model and potential virus-capsid binding site of a putative HEV receptor Grp78
-
Yu H., Li S., Yang C., Wei M., Song C., Zheng Z., Gu Y., Du H., Zhang J., Xia N. Homology model and potential virus-capsid binding site of a putative HEV receptor Grp78. J. Mol. Model. 2011, 17:987-995. 10.1007/s00894-010-0794-5.
-
(2011)
J. Mol. Model.
, vol.17
, pp. 987-995
-
-
Yu, H.1
Li, S.2
Yang, C.3
Wei, M.4
Song, C.5
Zheng, Z.6
Gu, Y.7
Du, H.8
Zhang, J.9
Xia, N.10
-
95
-
-
77649196117
-
Integration of ER stress, oxidative stress and the inflammatory response in health and disease
-
Zhang K. Integration of ER stress, oxidative stress and the inflammatory response in health and disease. Int. J. Clin. Exp. Med. 2010, 3:33-40.
-
(2010)
Int. J. Clin. Exp. Med.
, vol.3
, pp. 33-40
-
-
Zhang, K.1
-
96
-
-
47949099916
-
From endoplasmic-reticulum stress to the inflammatory response
-
Zhang K., Kaufman R. From endoplasmic-reticulum stress to the inflammatory response. Nature 2008, 454:455-462. 10.1038/nature07203.
-
(2008)
Nature
, vol.454
, pp. 455-462
-
-
Zhang, K.1
Kaufman, R.2
-
97
-
-
77955474897
-
Roles of GRP78 in physiology and cancer
-
Zhang L.H., Zhang X. Roles of GRP78 in physiology and cancer. J. Cell Biochem. 2010, 110:1299-1305. 10.1002/jcb.22679.
-
(2010)
J. Cell Biochem.
, vol.110
, pp. 1299-1305
-
-
Zhang, L.H.1
Zhang, X.2
-
98
-
-
80051576392
-
KFC2: a knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features
-
Zhu X., Mitchell J.C. KFC2: a knowledge-based hot spot prediction method based on interface solvation, atomic density, and plasticity features. Proteins 2011, 79:2671-2683. 10.1002/prot.23094.
-
(2011)
Proteins
, vol.79
, pp. 2671-2683
-
-
Zhu, X.1
Mitchell, J.C.2
|