-
1
-
-
0033214628
-
Heuristic approach to deriving models for gene finding
-
Besemer,J. and Borodovsky,M. (1999) Heuristic approach to deriving models for gene finding. Nucleic Acids Res., 27, 3911-3920.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3911-3920
-
-
Besemer, J.1
Borodovsky, M.2
-
3
-
-
78449310681
-
SmashCell: a software framework for the analysis of microbial genomes
-
Harrington,E. et al. (2010) SmashCell: a software framework for the analysis of microbial genomes. Bioinformatics.
-
(2010)
Bioinformatics
-
-
Harrington, E.1
-
4
-
-
65549160988
-
Identification of ribosomal RNA genes in metagenomic fragments
-
Huang,Y. et al. (2009) Identification of ribosomal RNA genes in metagenomic fragments. Bioinformatics, 25, 1338-1340.
-
(2009)
Bioinformatics
, vol.25
, pp. 1338-1340
-
-
Huang, Y.1
-
5
-
-
0037267048
-
Whole-genome sequence assembly for mammalian genomes: Arachne 2
-
Jaffe,D.B. et al. (2003) Whole-genome sequence assembly for mammalian genomes: Arachne 2. Genome Res., 13, 91-96.
-
(2003)
Genome Res.
, vol.13
, pp. 91-96
-
-
Jaffe, D.B.1
-
6
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa,M. et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res., 36, D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
-
7
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
Letunic,I. and Bork,P. (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics, 23, 127-128.
-
(2007)
Bioinformatics
, vol.23
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
8
-
-
38549139537
-
IMG/M: a data management and analysis system for metagenomes
-
Markowitz,V.M. et al. (2008) IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res., 36, D534-D538.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Markowitz, V.M.1
-
9
-
-
53549118607
-
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer,F. et al. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics, 9, 386.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
-
10
-
-
67650763443
-
Visual and statistical comparison of metagenomes
-
Mitra,S. et al. (2009)Visual and statistical comparison of metagenomes. Bioinformatics, 25, 1849-1855.
-
(2009)
Bioinformatics
, vol.25
, pp. 1849-1855
-
-
Mitra, S.1
-
11
-
-
75549085495
-
Egg nog v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
-
Muller,J. et al. (2010) eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. Nucleic Acids Res., 38, D190-D195.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Muller, J.1
-
12
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers,E.W. et al. (2000) A whole-genome assembly of Drosophila. Science, 287, 2196-2204.
-
(2000)
Science
, vol.287
, pp. 2196-2204
-
-
Myers, E.W.1
-
13
-
-
59149090570
-
MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes
-
Noguchi,H. et al. (2008) MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes. DNA Res., 15, 387-396.
-
(2008)
DNA Res.
, vol.15
, pp. 387-396
-
-
Noguchi, H.1
-
14
-
-
70449713952
-
The NIH Human Microbiome Project
-
Peterson,J. et al. (2009) The NIH Human Microbiome Project. Genome Res., 19, 2317-2323.
-
(2009)
Genome Res.
, vol.19
, pp. 2317-2323
-
-
Peterson, J.1
-
15
-
-
35748976529
-
Get the most out of your metagenome: computational analysis of environmental sequence data
-
Raes,J. et al. (2007) Get the most out of your metagenome: computational analysis of environmental sequence data. Curr. Opin. Microbiol., 10, 490-498.
-
(2007)
Curr. Opin. Microbiol.
, vol.10
, pp. 490-498
-
-
Raes, J.1
-
16
-
-
33947215475
-
CAMERA: a community resource for metagenomics
-
Seshadri,R. et al. (2007) CAMERA: a community resource for metagenomics. PLoS Biol., 5, e75.
-
(2007)
PLoS Biol.
, vol.5
-
-
Seshadri, R.1
-
17
-
-
58149505604
-
Discovering functional novelty in metagenomes: examples from light-mediated processes
-
Singh,A.H. et al. (2009) Discovering functional novelty in metagenomes: examples from light-mediated processes. J. Bacteriol., 191, 32-41.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 32-41
-
-
Singh, A.H.1
-
18
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang,Q. et al. (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol., 73, 5261-5267.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
|