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Volumn 63, Issue 1, 2014, Pages 1-16

Constructing phylogenies in the presence of intra-individual site Polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron

Author keywords

Intra individual site polymorphism; nuclear DNA; phylogenetic networks; phylogeny reconstruction

Indexed keywords

RIBOSOME DNA;

EID: 84891368704     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syt052     Document Type: Article
Times cited : (39)

References (78)
  • 1
    • 0344099458 scopus 로고    scopus 로고
    • Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae)
    • Aguilar J.F., Feliner G.N. 2003. Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae). Mol. Phylogenet. Evol. 28:430-447.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 430-447
    • Aguilar, J.F.1    Feliner, G.N.2
  • 2
    • 0043011373 scopus 로고    scopus 로고
    • Phylogeny and biogeography of Erythronium (Liliaceae) inferred fromchloroplastmatK and nuclear rDNA ITS sequences
    • Allen G.A., Soltis D.E., Soltis P.S. 2003. Phylogeny and biogeography of Erythronium (Liliaceae) inferred fromchloroplastmatK and nuclear rDNA ITS sequences. Syst. Bot. 28:512-523.
    • (2003) Syst. Bot. , vol.28 , pp. 512-523
    • Allen, G.A.1    Soltis, D.E.2    Soltis, P.S.3
  • 3
    • 0344613211 scopus 로고    scopus 로고
    • Ribosomal ITS sequences and plant phylogenetic inference
    • Álvarez I., Wendel J.F. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29:417-434.
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 417-434
    • Álvarez, I.1    Wendel, J.F.2
  • 4
    • 0019132475 scopus 로고
    • Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes
    • ArnheimN., Krystal M., Schmickel R.,Wilson G., Ryder O., Zimmer E. 1980. Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes. Proc. Natl Acad. Sci. USA. 77:7323-7327.
    • (1980) Proc. Natl Acad. Sci. USA. , vol.77 , pp. 7323-7327
    • Arnheim, N.1    Krystal, M.2    Schmickel, R.3    Wilson, G.4    Ryder, O.5    Zimmer, E.6
  • 5
    • 0345149784 scopus 로고    scopus 로고
    • Characterization of angiospermnrDNA polymorphism, paralogy, and pseudogenes
    • Bailey C.D., Carr T.G., Harris S.A., Hughes C.E. 2003. Characterization of angiospermnrDNA polymorphism, paralogy, and pseudogenes. Mol. Phylogenet. Evol. 29:435-455.
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 435-455
    • Bailey, C.D.1    Carr, T.G.2    Harris, S.A.3    Hughes, C.E.4
  • 7
    • 0028184174 scopus 로고
    • High resolution of human evolutionary trees with polymorphic microsatellites
    • Bowcock A.M. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455.
    • (1994) Nature , vol.368 , pp. 455
    • Bowcock, A.M.1
  • 8
    • 1542347067 scopus 로고    scopus 로고
    • Neighbor-net: An agglomerative method for the construction of phylogenetic networks
    • Bryant D., Moulton V. 2004. Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Mol. Biol. Evol. 21:255-265.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 255-265
    • Bryant, D.1    Moulton, V.2
  • 9
    • 0031029173 scopus 로고    scopus 로고
    • Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae)
    • Campbell C.S., Wojciechowski M.F., Baldwin B.G., Alice L.A., Donoghue M.J. 1997. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol. Biol. Evol. 14:81-90.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 81-90
    • Campbell, C.S.1    Wojciechowski, M.F.2    Baldwin, B.G.3    Alice, L.A.4    Donoghue, M.J.5
  • 10
    • 0030980947 scopus 로고    scopus 로고
    • Transcriptional analysis of nucleolar dominance in polyploid plants: Biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica
    • Chen Z.J., Pikaard C.S. 1997. Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica. Proc. Natl Acad. Sci., USA. 94:3442-3447.
    • (1997) Proc. Natl Acad. Sci., USA. , vol.94 , pp. 3442-3447
    • Chen, Z.J.1    Pikaard, C.S.2
  • 11
    • 0032797549 scopus 로고    scopus 로고
    • Phylogeography of North American populations of the moss species Hylocomium sylendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA
    • Chiang T.Y., Schaal B.A. 1999. Phylogeography of North American populations of the moss species Hylocomium sylendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA. Mol. Ecol. 8:1037-1042.
    • (1999) Mol. Ecol. , vol.8 , pp. 1037-1042
    • Chiang, T.Y.1    Schaal, B.A.2
  • 12
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of diploid populations
    • Clark A.G. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7:111-122.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 13
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer programto estimate gene genealogies
    • Clement M., Posada D., Crandall K. 2000. TCS: a computer programto estimate gene genealogies. Mol. Ecol. 9:1657-1660.
    • (2000) Mol. Ecol. , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 14
    • 0030087851 scopus 로고    scopus 로고
    • Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNAgene variants in Arabidopsis thaliana, suggesting local spreading of variants as themode for gene homogenization during concerted evolution
    • Copenhaver G.P., Pikaard C.S. 1996. Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNAgene variants in Arabidopsis thaliana, suggesting local spreading of variants as themode for gene homogenization during concerted evolution. Plant J. 9:273-282.
    • (1996) Plant J. , vol.9 , pp. 273-282
    • Copenhaver, G.P.1    Pikaard, C.S.2
  • 15
    • 79955120489 scopus 로고    scopus 로고
    • Evolution of the 5.8S nrDNA gene and internal transcribed spacers in Carapichea ipecacuanha (Rubiaceae) within a phylogeographic context
    • de Sousa Queiroz C., de Carvalho Batista F.R., de Oliveira L.O. 2011. Evolution of the 5.8S nrDNA gene and internal transcribed spacers in Carapichea ipecacuanha (Rubiaceae) within a phylogeographic context. Mol. Phylogenet. Evol. 59:293-302.
    • (2011) Mol. Phylogenet. Evol. , vol.59 , pp. 293-302
    • De Sousa Queiroz, C.1    De Carvalho, B.F.R.2    De Oliveira, L.O.3
  • 16
    • 77950955268 scopus 로고    scopus 로고
    • The oaks of western Eurasia: Traditional classifications and evidence from two nuclear markers
    • Denk T., Grimm G.W. 2010. The oaks of western Eurasia: traditional classifications and evidence from two nuclear markers. Taxon 59:351-366.
    • (2010) Taxon , vol.59 , pp. 351-366
    • Denk, T.1    Grimm, G.W.2
  • 17
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 18
    • 34548583355 scopus 로고    scopus 로고
    • Nuclear vs. Plastid data: Complex Pleistocene history of a circumpolar key species
    • Eidesen P.B., Alsos I.G., Popp M., Stensrud ∅., Suda J., Brochmann C. 2007. Nuclear vs. plastid data: complex Pleistocene history of a circumpolar key species. Mol. Ecol. 16:3902-3925.
    • (2007) Mol. Ecol. , vol.16 , pp. 3902-3925
    • Eidesen, P.B.1    Alsos, I.G.2    Popp, M.3    Stensrud4    Suda, J.5    Brochmann, C.6
  • 19
    • 0029360612 scopus 로고
    • Concerted evolution of repetitive DNA sequences in Eukaryotes
    • Elder J.F., Turner B.J. 1995. Concerted evolution of repetitive DNA sequences in Eukaryotes. Q. Rev. Biol. 70:297-320.
    • (1995) Q. Rev. Biol. , vol.70 , pp. 297-320
    • Elder, J.F.1    Turner, B.J.2
  • 20
    • 0031416139 scopus 로고    scopus 로고
    • Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data
    • Eriksson T., Donoghue M. 1997. Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data. Syst. Bot. 22:555-573.
    • (1997) Syst. Bot. , vol.22 , pp. 555-573
    • Eriksson, T.1    Donoghue, M.2
  • 21
    • 0034495458 scopus 로고    scopus 로고
    • High levels of intraand inter-individual polymorphism in the rDNA ITS1 of Caulerpa racemosa (Chlorophyta)
    • Fama P., Olsen J.L., StamW.T., Procaccini G. 2000. High levels of intraand inter-individual polymorphism in the rDNA ITS1 of Caulerpa racemosa (Chlorophyta). Eur. J. Phycol. 35:349-356.
    • (2000) Eur. J. Phycol. , vol.35 , pp. 349-356
    • Fama, P.1    Olsen, J.L.2    Stam, W.T.3    Procaccini, G.4
  • 22
    • 0005624902 scopus 로고
    • Inferring phylogenetic trees from chromosome inversion data
    • Farris J.S. 1978. Inferring phylogenetic trees from chromosome inversion data. Syst. Zool. 27:275-284.
    • (1978) Syst. Zool. , vol.27 , pp. 275-284
    • Farris, J.S.1
  • 23
    • 70350504603 scopus 로고    scopus 로고
    • Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): Disentangling phylogenetic signal, reticulation, and noise
    • Fehrer J., Krak K., Chrtek J. 2009. Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evol. Biol. 9:239.
    • (2009) BMC Evol. Biol. , vol.9 , pp. 239
    • Fehrer, J.1    Krak, K.2    Chrtek, J.3
  • 24
    • 2142815111 scopus 로고    scopus 로고
    • Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae)
    • Feliner G.N., Larena B.G., Aguilar J.F. 2004. Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Ann. Bot. 93:189-200.
    • (2004) Ann. Bot. , vol.93 , pp. 189-200
    • Feliner, G.N.1    Larena, B.G.2    Aguilar, J.F.3
  • 25
    • 34447254003 scopus 로고    scopus 로고
    • Better the devil you know? Guidelines for insightful utilization of nrDNAITS in species-level evolutionary studies in plants
    • Feliner G.N., Rosselló J.A. 2007. Better the devil you know? Guidelines for insightful utilization of nrDNAITS in species-level evolutionary studies in plants. Mol. Phylogenet. Evol. 44:911-919.
    • (2007) Mol. Phylogenet. Evol. , vol.44 , pp. 911-919
    • Feliner, G.N.1    Rosselló, J.A.2
  • 26
    • 0002975381 scopus 로고
    • Alternative methods of phylogenetic inference and their interrelationship
    • Felsenstein J. 1979. Alternative methods of phylogenetic inference and their interrelationship. Syst. Zool. 28:49-62.
    • (1979) Syst. Zool. , vol.28 , pp. 49-62
    • Felsenstein, J.1
  • 27
    • 85006520671 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 29
    • 41849085152 scopus 로고    scopus 로고
    • General functions to transformassociate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability
    • Göker M., GrimmG.W. 2008. General functions to transformassociate data to host data, and their use in phylogenetic inference from sequences with intra-individual variability. BMC Evol. Biol. 8:86.
    • (2008) BMC Evol. Biol. , vol.8 , pp. 86
    • Göker, M.1
  • 30
    • 77149169102 scopus 로고    scopus 로고
    • The reticulate origin of modern plane trees (Platanus, Platanaceae): A nuclear marker puzzle
    • Grimm G.W., Denk T. 2010. The reticulate origin of modern plane trees (Platanus, Platanaceae): A nuclear marker puzzle. Taxon 59:134-147.
    • (2010) Taxon , vol.59 , pp. 134-147
    • Grimm, G.W.1    Denk, T.2
  • 31
    • 34547399969 scopus 로고    scopus 로고
    • Coding of intraspecific nucleotide polymorphisms: A tool to resolve reticulate evolutionary relationships in the ITS of beech trees (Fagus L., Fagaceae)
    • Grimm G.W., Denk T., Hemleben V. 2007a. Coding of intraspecific nucleotide polymorphisms: a tool to resolve reticulate evolutionary relationships in the ITS of beech trees (Fagus L., Fagaceae). Syst. Biodiversity. 5:291-309.
    • (2007) Syst. Biodiversity. , vol.5 , pp. 291-309
    • Grimm, G.W.1    Denk, T.2    Hemleben, V.3
  • 32
    • 34548645614 scopus 로고    scopus 로고
    • Evolutionary history and systematics of Acer section Acer-a case study of low-level phylogenetics
    • Grimm G.W., Denk T., Hemleben V. 2007b. Evolutionary history and systematics of Acer section Acer-a case study of low-level phylogenetics. Plant Syst. Evol. 267:215-253.
    • (2007) Plant Syst. Evol. , vol.267 , pp. 215-253
    • Grimm, G.W.1    Denk, T.2    Hemleben, V.3
  • 33
    • 70449708285 scopus 로고    scopus 로고
    • A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences
    • Grimm G.W., Renner S.S., Stamatakis A., Hemleben V. 2006. A nuclear ribosomal DNA phylogeny of Acer inferred with maximum likelihood, splits graphs, and motif analysis of 606 sequences. Evol. Bioinforma. 2:7-22.
    • (2006) Evol. Bioinforma. , vol.2 , pp. 7-22
    • Grimm, G.W.1    Renner, S.S.2    Stamatakis, A.3    Hemleben, V.4
  • 35
    • 0003105171 scopus 로고
    • Organization and length heterogeneity of plant ribosomal RNA genes
    • G. Kahl, editor Weinheim: VCH Verlagsgesellschaft mbH
    • Hemleben V., Ganal M., Gerstner J., Schiebel K., Torres R.A. 1988. Organization and length heterogeneity of plant ribosomal RNA genes. In: G. Kahl, editor. Architecture of eukaryotic genes. Weinheim: VCH Verlagsgesellschaft mbH, p. 371-383.
    • (1988) Architecture of Eukaryotic Genes , pp. 371-383
    • Hemleben, V.1    Ganal, M.2    Gerstner, J.3    Schiebel, K.4    Torres, R.A.5
  • 36
    • 21144444309 scopus 로고    scopus 로고
    • Consensus networks: A method for visualising incompatibilities in collections of trees
    • G. Benson, R.D.M. Page, editors Berlin, Germany: Springer Verlag
    • Holland B., Moulton V. 2003. Consensus networks: a method for visualising incompatibilities in collections of trees. In: G. Benson, R.D.M. Page, editors. Algorithms in Bioinformatics, WABI 2003. Berlin, Germany: Springer Verlag, p. 165-176.
    • (2003) Algorithms in Bioinformatics, WABI 2003 , pp. 165-176
    • Holland, B.1    Moulton, V.2
  • 39
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • Huson D.H., Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23:254-267.
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1    Bryant, D.2
  • 40
    • 85006528782 scopus 로고
    • The development of a phylogeny for frogs
    • Inger R.F. 1967. The development of a phylogeny for frogs. Evolution 21:401-410.
    • (1967) Evolution , vol.21 , pp. 401-410
    • Inger, R.F.1
  • 41
    • 76349122243 scopus 로고    scopus 로고
    • Phylogenetics of Puya (Bromeliaceae): Placement, major lineages, and evolution of Chilean species
    • Jabaily R.S., Sytsma K.J. 2010. Phylogenetics of Puya (Bromeliaceae): placement, major lineages, and evolution of Chilean species. Am. J. Bot. 97:337-356.
    • (2010) Am. J. Bot. , vol.97 , pp. 337-356
    • Jabaily, R.S.1    Sytsma, K.J.2
  • 42
    • 34447297637 scopus 로고    scopus 로고
    • Incorporating allelic variation for reconstructing the evolutionary history of organisms frommultiple genes: An example from Rosa in North America
    • Joly S., Bruneau A. 2006. Incorporating allelic variation for reconstructing the evolutionary history of organisms frommultiple genes: an example from Rosa in North America. Syst. Biol. 55:623-636.
    • (2006) Syst. Biol. , vol.55 , pp. 623-636
    • Joly, S.1    Bruneau, A.2
  • 43
    • 70149100417 scopus 로고    scopus 로고
    • A statistical approach for distinguishing hybridization and incomplete lineage sorting
    • Joly S., McLenachan P.A., Lockhart P.J. 2009. A statistical approach for distinguishing hybridization and incomplete lineage sorting. Am. Natural. 174:E54-E70.
    • (2009) Am. Natural. , vol.174
    • Joly, S.1    McLenachan, P.A.2    Lockhart, P.J.3
  • 44
    • 0027977355 scopus 로고
    • Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA
    • Kim, K.-J., and Jansen R.K. 1994. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190:157-185.
    • (1994) Plant Syst. Evol. , vol.190 , pp. 157-185
    • Kim, K.-J.1    Jansen, R.K.2
  • 45
    • 51549102585 scopus 로고    scopus 로고
    • Exploring evolutionary dynamics of nrDNA in Carex subgenus Vignea (Cyperaceae)
    • King M.G., Roalson E.H. 2008. Exploring evolutionary dynamics of nrDNA in Carex subgenus Vignea (Cyperaceae). Syst. Bot. 33:514-524.
    • (2008) Syst. Bot. , vol.33 , pp. 514-524
    • King, M.G.1    Roalson, E.H.2
  • 46
    • 12444329869 scopus 로고    scopus 로고
    • Organization, differential expression and methylation of rDNA in artificial Solanum allopolyploids
    • KomarovaN.Y., Grabe T., Huigen D.J., Hemleben V., Volkov R.A. 2004. Organization, differential expression and methylation of rDNA in artificial Solanum allopolyploids. Plant Mol. Biol. 56:439-463.
    • (2004) Plant Mol. Biol. , vol.56 , pp. 439-463
    • Komarova, N.Y.1    Grabe, T.2    Huigen, D.J.3    Hemleben, V.4    Volkov, R.A.5
  • 47
    • 33746278627 scopus 로고    scopus 로고
    • Reconstructing reticulate evolutionary histories of plants
    • Lockhart K.M.P.J. 2006. Reconstructing reticulate evolutionary histories of plants. Trends Plant Sci. 11:398-404.
    • (2006) Trends Plant Sci. , vol.11 , pp. 398-404
    • Lockhart, K.M.P.J.1
  • 48
    • 23244463374 scopus 로고    scopus 로고
    • Phylogeographic inferences concerning evolution of Brazilian Passiflora actinia and P. Elegans (Passifloraceae) based on ITS (nrDNA) variation
    • Lorenz-Lemke A.P., Muschner V.C., Bonatto S.L., Cervi A.C., Salzano F.M., Freitas L.B. 2005. Phylogeographic inferences concerning evolution of Brazilian Passiflora actinia and P. elegans (Passifloraceae) based on ITS (nrDNA) variation. Ann. Bot. 95:799-806.
    • (2005) Ann. Bot. , vol.95 , pp. 799-806
    • Lorenz-Lemke, A.P.1    Muschner, V.C.2    Bonatto, S.L.3    Cervi, A.C.4    Salzano, F.M.5    Freitas, L.B.6
  • 49
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • MaddisonW.P. 1997. Gene trees in species trees. Syst. Biol. 46:523-536.
    • (1997) Syst. Biol. , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 51
    • 77952843033 scopus 로고    scopus 로고
    • Gene capture from across the grass gamily in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics
    • Mahelka V., Kopecký D. 2010. Gene capture from across the grass gamily in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics. Mol. Biol. Evol. 27:1370-1390.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 1370-1390
    • Mahelka, V.1    Kopecký, D.2
  • 52
    • 33645226786 scopus 로고    scopus 로고
    • Phylogenetic relationships and biogeography within the Eurasian clade of Amaryllidaceae based on plastid ndhF and nrDNA ITS sequences: Lineage sorting in a reticulate area?
    • Meerow A.W., Francisco-Ortega J., Kuhn D.N., Schnell R.J. 2006. Phylogenetic relationships and biogeography within the Eurasian clade of Amaryllidaceae based on plastid ndhF and nrDNA ITS sequences: lineage sorting in a reticulate area? Syst. Biol. 31:42-60.
    • (2006) Syst Biol. , vol.31 , pp. 42-60
    • Meerow, A.W.1    Francisco-Ortega, J.2    Kuhn, D.N.3    Schnell, R.J.4
  • 53
    • 33748359725 scopus 로고    scopus 로고
    • Patterns of long-distance dispersal in Tiquilia subg. Tiquilia (Boraginaceae): Implications for the origins of amphitropical disjuncts and Galapagos Islands endemics
    • MooreM.J.,TyeA., Jansen R.K. 2006.Patterns of long-distance dispersal in Tiquilia subg. Tiquilia (Boraginaceae): implications for the origins of amphitropical disjuncts and Galapagos Islands endemics. Am. J. Bot. 93:1163-1177.
    • (2006) Am. J. Bot. , vol.93 , pp. 1163-1177
    • Moore, M.J.1    Tye, A.2    Jansen, R.K.3
  • 54
    • 67549114986 scopus 로고    scopus 로고
    • Insights into reticulate evolution in Machaerantherinae (Asteraceae: Astereae): 5S ribosomal RNA spacer variation, estimating support for incongruence, and constructing reticulate phylogenies
    • Morgan D.R., Korn R.-L., Mugleston S.L. 2009. Insights into reticulate evolution in Machaerantherinae (Asteraceae: Astereae): 5S ribosomal RNA spacer variation, estimating support for incongruence, and constructing reticulate phylogenies. Am. J. Bot. 96:920-932.
    • (2009) Am. J. Bot. , vol.96 , pp. 920-932
    • Morgan, D.R.1    Korn, R.-L.2    Mugleston, S.L.3
  • 55
    • 27944477670 scopus 로고    scopus 로고
    • Concerted and birth-and-death evolution of multigene families
    • NeiM., Rooney A.P. 2005. Concerted and birth-and-death evolution of multigene families. Annu. Rev. Genet. 39:121-152.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 121-152
    • Nei, M.1    Rooney, A.P.2
  • 56
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phylogenetics and evolution in R language
    • Paradis E., Claude J., Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinforma. 20:289-290.
    • (2004) Bioinforma , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 57
    • 0035576432 scopus 로고    scopus 로고
    • Genomic change and gene silencing in polyploids
    • Pikaard C.S. 2001. Genomic change and gene silencing in polyploids. Trends Genet. 17:675-677.
    • (2001) Trends Genet. , vol.17 , pp. 675-677
    • Pikaard, C.S.1
  • 58
    • 84885382880 scopus 로고    scopus 로고
    • Testing largescale conservation corridors designed for patterns and processes: Comparative phylogeography of three tree species
    • doi: 10.1111/ddi.12113
    • Potts A.J., Hedderson T.A., Cowling R.M. 2013a. Testing largescale conservation corridors designed for patterns and processes: comparative phylogeography of three tree species. Diversity Distributions. doi: 10.1111/ddi.12113.
    • (2013) Diversity Distributions
    • Potts, A.J.1    Hedderson, T.A.2    Cowling, R.M.3
  • 59
    • 84872534348 scopus 로고    scopus 로고
    • The Last Glacial Maximum distribution of Albany subtropical thicket inferred from community distribution modelling
    • Potts, A.J., Hedderson T.A, Franklin J., Cowling R.M. 2013b. The Last Glacial Maximum distribution of Albany subtropical thicket inferred from community distribution modelling. J. Biogeography 40:310-322.
    • (2013) J. Biogeography , vol.40 , pp. 310-322
    • Potts, A.J.1    Hedderson, T.A.2    Franklin, J.3    Cowling, R.M.4
  • 60
    • 0001244368 scopus 로고
    • Ribosomal RNA genes in plants: Variability in copy number and in the intergenic spacer
    • Rogers S.O., Bendich A.J. 1987. Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer. Plant Mol. Biol. 9:509-520.
    • (1987) Plant Mol. Biol. , vol.9 , pp. 509-520
    • Rogers, S.O.1    Bendich, A.J.2
  • 61
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinforma. 19:1572-1574.
    • (2003) Bioinforma. , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 62
    • 33846442377 scopus 로고    scopus 로고
    • A phylogeographic split in Buxus balearica (Buxaceae) as evidenced by nuclear ribosomal markers: When ITS paralogues arewelcome
    • Rosselló J., Lázaro A., Cosín R., Molins A. 2007. A phylogeographic split in Buxus balearica (Buxaceae) as evidenced by nuclear ribosomal markers: when ITS paralogues arewelcome. J. Mol. Evol. 64:143-157.
    • (2007) J. Mol. Evol. , vol.64 , pp. 143-157
    • Rosselló, J.1    Lázaro, A.2    Cosín, R.3    Molins, A.4
  • 63
    • 84868035220 scopus 로고    scopus 로고
    • Gaps: An elusive source of phylogenetic information
    • Saurabh K., Holland B.R., Gibb G.C., Penny D. 2012. Gaps: an elusive source of phylogenetic information. Syst. Biol. 61:1075-1082.
    • (2012) Syst. Biol. , vol.61 , pp. 1075-1082
    • Saurabh, K.1    Holland, B.R.2    Gibb, G.C.3    Penny, D.4
  • 65
    • 48249099795 scopus 로고    scopus 로고
    • Phylogeny, biogeography, and rates of diversification ofNewWorld Astragalus (Leguminosae) with an emphasis on South American radiations
    • Scherson R.A.,Vidal R., Sanderson M.J. 2008.Phylogeny, biogeography, and rates of diversification ofNewWorld Astragalus (Leguminosae) with an emphasis on South American radiations. Am. J. Bot. 95:1030-1039.
    • (2008) Am. J. Bot. , vol.95 , pp. 1030-1039
    • Scherson, R.A.1    Vidal, R.2    Sanderson, M.J.3
  • 66
    • 79952846201 scopus 로고    scopus 로고
    • Genetic patterns in the Lathyrus pannonicus complex (Fabaceae) reflect ecological differentiation rather than biogeography and traditional subspecific division
    • Schlee M., Göker M., GrimmG.W., Hemleben V. 2011. Genetic patterns in the Lathyrus pannonicus complex (Fabaceae) reflect ecological differentiation rather than biogeography and traditional subspecific division. Bot. J. Linnean Soc. 165:402-421.
    • (2011) Bot. J. Linnean Soc. , vol.165 , pp. 402-421
    • Schlee, M.1    Göker, M.2    Grimm, G.W.3    Hemleben, V.4
  • 67
    • 79951548848 scopus 로고    scopus 로고
    • PHANGORN: Phylogenetic analysis
    • Schliep, K.P. 2011. PHANGORN: phylogenetic analysis in R. Bioinforma. 27:592-593.
    • (2011) R. Bioinforma , vol.27 , pp. 592-593
    • Schliep, K.P.1
  • 68
    • 0028500562 scopus 로고
    • Chromosomal homogeneity of Drosophila ribosomalDNAarrays suggests intrachromosomal exchanges drive concerted evolution
    • Schlötterer C., Tautz D. 1994. Chromosomal homogeneity of Drosophila ribosomalDNAarrays suggests intrachromosomal exchanges drive concerted evolution. Curr. Biol. 4:777-783.
    • (1994) Curr. Biol. , vol.4 , pp. 777-783
    • Schlötterer, C.1    Tautz, D.2
  • 69
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinforma. 22:2688-2690.
    • (2006) Bioinforma. , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 70
    • 73249118100 scopus 로고    scopus 로고
    • Molecular systematics of the neotropical genus Psiguria (Cucurbitaceae): Implications for phylogeny and species identification
    • Steele P.R., Friar L.M., Gilbert L.E., Jansen R.K. 2010. Molecular systematics of the neotropical genus Psiguria (Cucurbitaceae): Implications for phylogeny and species identification. Am. J. Bot. 97:156-173.
    • (2010) Am. J. Bot. , vol.97 , pp. 156-173
    • Steele, P.R.1    Friar, L.M.2    Gilbert, L.E.3    Jansen, R.K.4
  • 71
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M., Smith N., Donnelly P. 2001. A new statistical method for haplotype reconstruction from population data. Am. J. Human Genet. 68:978-989.
    • (2001) Am. J. Human Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.2    Donnelly, P.3
  • 73
    • 0033059265 scopus 로고    scopus 로고
    • Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum
    • Sunderland MA: Sinauer Associates
    • Sunderland, MA: Sinauer Associates. Volkov R.A., Borisjuk N.V., Panchuk I.I., Schweizer D., Hemleben V. 1999. Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum. Mol. Biol. Evol. 16: 311-320.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 311-320
    • Volkov, R.A.1    Borisjuk, N.V.2    Panchuk, I.I.3    Schweizer, D.4    Hemleben, V.5
  • 74
    • 34547416030 scopus 로고    scopus 로고
    • Ribosomal DNA and plant hybrids: Inheritance, rearrangement, expression
    • Volkov R.A., Komarova N.Y., Hemleben V. 2007. Ribosomal DNA and plant hybrids: inheritance, rearrangement, expression. Syst. Biodiv. 5:261-276.
    • (2007) Syst. Biodiv. , vol.5 , pp. 261-276
    • Volkov, R.A.1    Komarova, N.Y.2    Hemleben, V.3
  • 75
    • 27144542150 scopus 로고    scopus 로고
    • Reconstructing patterns of reticulate evolution in angiosperms: What can we do?
    • Vriesendorp B., Bakker F.T. 2005. Reconstructing patterns of reticulate evolution in angiosperms: what can we do? Taxon 54:593-604.
    • (2005) Taxon , vol.54 , pp. 593-604
    • Vriesendorp, B.1    Bakker, F.T.2
  • 76
    • 0034127972 scopus 로고    scopus 로고
    • Detecting nucleotide additivity fromdirect sequences is a SNAP: An example fromSidalcea (Malvaceae)
    • Whittall J., Liston A., Gisler S., Meinke R.J. 2000. Detecting nucleotide additivity fromdirect sequences is a SNAP: an example fromSidalcea (Malvaceae). Plant Biol. 2:211-217.
    • (2000) Plant Biol. , vol.2 , pp. 211-217
    • Whittall, J.1    Liston, A.2    Gisler, S.3    Meinke, R.J.4
  • 77
    • 0033382149 scopus 로고    scopus 로고
    • Polymorphism in systematics and comparative biology
    • Wiens J.J. 1999. Polymorphism in systematics and comparative biology. Annu. Rev. Ecol. Syst. 30:327-362.
    • (1999) Annu. Rev. Ecol. Syst. , vol.30 , pp. 327-362
    • Wiens, J.J.1


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