Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae)

Annals of Botany

Volumn 93, Issue 2, 2004, Pages 189-200

  Nieto Feliner, Gonzalo ^a   Gutiérrez Larena, Belén ^a   Fuertes Aguilar, Javier ^a  

^a CSIC   (Spain)

Author keywords

Armeria; Biased concerted evolution; Gene flow; Geographical structure; Intragenomic polymorphism; Nuclear ribosomal ITS; Recombination

Indexed keywords

GENE FLOW; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION;

ARMERIA;

PLANT DNA; SPACER DNA;

ARTICLE; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC TRANSCRIPTION; GENETICS; GEOGRAPHY; INTRON; MOLECULAR CLONING; NUCLEOTIDE SEQUENCE; PLUMBAGINACEAE; POLYMERASE CHAIN REACTION; SPAIN;

BASE SEQUENCE; CLONING, MOLECULAR; DNA, INTERGENIC; DNA, PLANT; GEOGRAPHY; INTRONS; PLUMBAGINACEAE; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; SPAIN; TRANSCRIPTION, GENETIC;

EID: 2142815111     PISSN: 03057364     EISSN: None     Source Type: Journal    
DOI: 10.1093/aob/mch027     Document Type: Article

References (49)

1. Álvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 29: 417-434.
2. Anderson E. 1949. Introgressive hybridisation. New York: John Wiley.
3. Arnold ML. 1997. Natural hybridization and evolution. New York: Oxford University Press.
4. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence of angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
5. Bradley RD, Hillis DM. 1997. Recombinant DNA sequences generated by PCR amplification. Molecular Biology and Evolution 14: 592-593.
6. Brasier CM, Cooke DEL, Duncan JM. 1999. Origin of a new Phytophtora pathogen through interspecific hybridization. Proceedings of the National Academy of Sciences of the USA 96: 5878-5883.
7. Buckler ES, Ippolito A, Holtsford TP. 1997. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145: 821-832.
8. Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ. 1997. Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Molecular Biology and Evolution 14: 81-90.
9. Chiang T-Y, Hong K-H, Peng C-I. 2001. Experimental hybridization reveals biased inheritance of the internal transcribed spacer of the nuclear ribosomal DNA in Begonia x taipeiensis. Journal of Plant Research 114: 343-351.
10. Cronn R, Cedroni M, Haselkorn T, Grover C, Wendel JF. 2002. PCR-mediated recombination in amplification products derived from polypoloid cotton. Theoretical and Applied Genetics 104: 482-489.
11. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19: 11-15.
12. Dumolin-Lapègue S, Kremer A, Petit RJ. 1999. Are chloroplast and mitochondrial DNA variation species independent in oaks? Evolution 53: 1406-1413.
13. Eyre-Walker A, Gaut RL, Hilton H, Feldman DL, Gaut BS. 1998. Investigation of the bottleneck leading to domestication of maize. Proceedings of the National Academy of Sciences of the USA 95: 4441-446.
14. Fuertes Aguilar J, Nieto Feliner G. 2003. Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae). Molecular Phylogenetics and Evolution 28: 430-447.
15. Fuertes Aguilar J, Rosselló JA, Nieto Feliner G. 1999a. Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artificial hybrids of Armeria (Plumbaginaceae). Molecular Ecology 8: 1341-1346.
16. Fuertes Aguilar J, Rosselló JA, Nieto Feliner G. 1999b. Molecular evidence for the compilospecies model of reticulate evolution in Armeria (Plumbaginaceae). Systematic Biology 48: 735-754.
17. Gandolfi A, Bonilauri P, Rossi V, Menozzi P. 2001. Intraindividual and intraspecies variability of ITS1 sequences in the ancient asexual Darwinula stevensoni (Crustacea: Ostracoda). Heredity 87: 449-455.
18. Gernandt DS, Liston A, Piñero D. 2001. Variation in the nrDNA ITS of Pinus subsection Cembroides: implications for molecular systematic studies of Pine species complexes. Molecular Phylogenetics and Evolution 21: 449-467.
19. Gutiérrez Larena B, Fuertes Aguilar J, Nieto Feliner G. 2002. Glacial-induced altitudinal migrations in Armeria (Plumbaginaceae) inferred from patterns of cpDNA haplotype sharing. Molecular Ecology 11: 1965-1974.
20. Harris DJ, Crandall KA. 2000. Intragenomic variation within ITS1 and ITS2 of crayfish (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies. Molecular Biology and Evolution 17: 284-291.
21. Hershkovitz MA, Zimmer EA, Hahn WJ. 1999. Ribosomal DNA sequences and angiosperm systematics. In: Hollingsworth P, Bateman RM, Gornall RJ, eds. Molecular Systematics and Plant Evolution. London: Talylor & Francis, 268-326.
22. Hughes CE, Bailey CD, Harris SA. 2002. Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and nrDNA polymorphism. American Journal of Botany 89: 1057-1073.
23. Jackson HD, Steane DA, Potts BM, Vaillancourt RE. 1999. Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae). Molecular Ecology 8: 739-751.
24. Kim S-C, Rieseberg LH. 1999. Genetic architecture of species differences in annual sunflowers: implications for adaptive trait introgression. Genetics 153: 965-977.
25. Lexer C, Welch ME, Raymond O, Rieseberg LH. 2003. The origin of ecological divergence in Helianthus paradoxus (Asteraceae): selection on transgressive characters in a novel hybrid habitat. Evolution 57: 1989-2000.
26. McKinnon GE, Vaillancourt RE, Jackson HD, Potts BM. 2001. Chloroplast sharing in the Tasmanian Eucalyptus. Evolution 55: 703-711.
27. Masterson J. 1994. Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 264: 421-424.
28. Matos JA, Schaal BA. 2000. Chloroplast evolution in the Pinus montezumae complex: a coalescent approach to hybridization. Evolution 54: 1218-1233.
29. Nieto Feliner G, Fuertes Aguilar J, Rosselló JA. 2001. Can extensive reticulation and concerted evolution result in a cladistically structured molecular data set? Cladistics 17: 301-312.
30. Nieto Feliner G, Izuzquiza A, Lansac AR. 1996. Natural and experimental hybridization in Armeria (Plumbaginaceae): A. villosa ssp. carratracensis. Plant Systematics and Evolution 201: 163-177.
31. O'Kane SL, Schaal BA, Al-Shehbaz IA. 1996. The origins of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Systematic Botany 21: 559-566.
32. Posada D, Crandall KA. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proceedings of the National Academy of Sciences of the USA 98: 13757-13762.
33. Quijada A, Liston A, Robinson W, Alvarez Buylla E. 1997. The ribosomal ITS region as a marker to detect hybridization in pines. Molecular Ecology 6: 995-996.
34. Rauscher JT, Doyle JJ, Brown HD. 2002. Internal transcribed spacer repeat-specific primers and the analysis of hybridization in the Glycine tomentella (Leguminosae) polyploid complex. Molecular Ecology 11: 2691-2702.
35. Rieseberg LH. 1997. Hybrid origins of plant species. Annual Review of Ecology and Systematics 28: 359-389.
36. Rieseberg LH, Sinervo B, Linder CR, Ungerer C, Arias DM. 1996. Role of gene interactions in hybrid speciation: evidence from ancient and experimental hybrids. Science 272: 741-745.
37. Roelofs D, Van Velzen J, Kuperus P, Bachmann K. 1997. Molecular evidence for an extinct parent of the tetraploid species Microseris acuminata and M. campestris (Asteraceae, Lactuceae). Molecular Ecology 6: 641-649.
38. Sang T, Crawford DJ, Stuessy TF. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proceedings of the National Academy of Sciences of the USA 92: 6813-6817.
39. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA. 1998. Phylogeographic studies in plants: problems and prospects. Molecular Ecology 7: 465-474.
40. Smith DB, McAllister J, Casino C, Simmonds P. 1997. Virus 'quasispecies': making a mountain out of a molehill? Journal of General Virology 78: 1511-1519.
41. Vargas P, McAllister HA, Morton C, Jury SL, Wilkinson MA. 1999. Polyploid speciation in Hedera (Araliaceae): phylogenetic and biogeographic insights based on chromosome counts and ITS sequences. Plant Systematics and Evolution 219: 165-179.
42. Wendel JF. 2000. Genome evolution in polyploids. Plant Molecular Biology 42: 225-249.
43. Wendel JF, Schnabel A, Seelanan T. 1995. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proceedings of the National Academy of Sciences of the USA 92: 280-284.
44. Wichman SR, Wright SD, Cameron EK, Keeling DJ, Gardner RC. 2002. Elevated genetic heterogeneity and Pleistocene climatic instability: inferences from nrDNA in New Zealand Coprosma (Rubiaceae). Journal of Biogeography 29: 943-954.
45. Whittall J, Liston A, Gisler S, Meinke RJ. 2000. Detecting nucleotide additivity from direct sequences is a SNAP: an example from Sidalcea (Malvaceae). Plant Biology 2: 211-217.
46. Whittemore AT, Schaal BA. 1991. Interspecific gene flow in sympatric oaks. Proceedings of the National Academy of Sciences of the USA 88: 2540-2544.
47. Wolf PG, Murray RA, Sipes SD. 1997. Species-independent geographical structuring of chloroplast DNA haplotypes in a montane herb Ipomopsis (Polemoniaceae). Molecular Ecology 6: 283-291.
48. Woodell SRJ, Dale A. 1993. Biological flora of the British Isles: Armeria maritima (Mill.) Willd. (Statice armeria L.; S. maritima Mill.). Journal of Ecology 81: 573-588.
49. Zhang D, Sang T. 1999. Physical mapping of ribosomal RNA genes in Peonies (Paeonia, Paeoniaceae) by fluorescent in situ hybridization: implications for phylogeny and concerted evolution. American Journal of Botany 86: 735-740.