Phylogeography of North American populations of the moss species Hylocomium splendens based on the nucleotide sequence of internal transcribed spacer 2 of nuclear ribosomal DNA

Molecular Ecology

Volumn 8, Issue 6, 1999, Pages 1037-1042

  Chiang, T Y ^a   Schaal, B A ^b  

^a NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

^b WASHINGTON UNIVERSITY   (United States)

Author keywords

Hylocomium splendens; Internal transcribed spacer; Minimum spanning network monophyly; Phylogeography; Populations; Ribosomal DNA

Indexed keywords

POPULATION DISTRIBUTION; POPULATION GENETICS; RIBOSOMAL DNA; SEQUENCE ANALYSIS; SYSTEMATICS; TAXONOMY;

HYLOCOMIUM SPLENDENS;

EID: 0032797549     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.1999.00668.x     Document Type: Article

References (33)

1. Avise JC (1994) Molecular Markers, Natural History and Evolution. Chapman & Hall, New York.
2. Baldwin BG (1992) Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the Compositae. Molecular Phylogenetics and Evolution, 1, 3-16.
3. Baldwin BG (1993) Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined. American Journal of Botany, 80, 222-238.
4. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phytogeny. Annals of Missouri Botanical Garden, 82, 247-277.
5. Castelloe J, Templeton AR (1994) Root probability for intra-specific gene trees under neutral coalescent theory. Molecular Phylogenetics and Evolution, 3, 102-113.
6. Chiang TY (1994) Phylogenetics and evolution of the moss family Hylocomiaceae. PhD Thesis, Division of Biology and Biomedical Sciences, Washington University, St. Louis, USA.
7. Cronberg N, Molau U, Sonesson M (1997) Genetic variation in the clonal bryophyte Hylocomium splendens: a hierarchical geographical scale in Scandinavia. Heredity, 78,293-301.
8. Delcourt HR, Delcourt PA (1991) Quaternary Ecology. A Paleoecological Perspective. Chapman & Hall, London.
9. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19, 11-15.
10. Emshwiller E, Doyle JJ (1998) Origins of domestication and polyploidy in oca (Oxalis tuberosa: Oxalidaceae): nrDNA ITS data. American Journal of Botany, 85, 975-985.
11. Excoffier L, Smouse PE (1994) Using allele frequencies and geographic subdivision to reconstruct gene trees within a species: molecular variance parsimony. Genetics, 136, 343-359.
12. Fritz GN, Conn J, Cockburn A, Seawright J (1994) Sequence analysis of the ribosomal DNA internal transcribed spacer 2 from populations of Anopheles nuneztovari (Diptera: Culicidae). Molecular Biology and Evolution, 11, 406-416.
13. Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. CABIOS, 8, 189-191.
14. Hillis DM, Bull JJ (1993) An empirical test of bootstrapping as a method assessing confidence in phylogenetic analysis. Systematic Biology, 42, 182-192.
15. Hillis DM, Huelsenbeck JP (1992) Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity, 83, 189-195.
16. Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from DNA sequence data. Genetics, 132, 583-589.
17. Kim HN, Harada K, Yamazaki T (1996) Isozyme polymorphism and genetic structure of a liverwort Conocephalum conicum. Genes and Genetic Systematics, 71, 225-235.
18. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
19. Klassen GJ, Mooi RD, Locke A (1991) Consistency indices and random data. Systematic Zoology, 40, 446-457.
20. Kooistra WHCF, Stam WT, Olson JL, van den Hoek C (1992) Biogeography of Cladophoropsis membranacea based on comparisons of nuclear rDNA ITS sequences. Journal of Phycology, 28, 660-668.
21. Kumar S, Tamura K, Nei M (1993) MEGA: Molecular Evolutionary Genetics Analysis, Version 1.01. The Pennsylvania State University, University Park, PA 16802, USA.
22. Miller NG (1984) Tertiary and Quaternary fossils. In: New Manual of Bryology (ed. Schuster RM), pp. 1194-1232, The Hattori Botanical Laboratory, Nichinan, Japan.
23. Noguchi A (1972) On the delimitation of the genera of Hylocomiaceae and Rhytidiaceae. Journal of the Hattori Botanical Laboratory, 35, 155-168.
24. O'Donnell K (1992) Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum (Gibberella pulicares). Current Genetics, 22, 213-220.
25. O'Kane SL (1993) Molecular systematics of Lopezia (Onagraceae). PhD Thesis, Division of Biology and Biomedical Sciences, Washington University, St Louis, MO, USA.
26. Rohrer JR (1985) A phenetic and phylogenetic analysis of the Hylocomiaceae and Rhytidiaceae. Journal of Hattori Botanical Laboratory, 59, 185-240.
27. Rozas J, Rozas R (1997) DnaSP, Version 2.0: a novel software package for extensive molecular population genetics analysis. Computer Application Biosciences, 13, 307-311.
28. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciencesof the USA, 74, 5463-5467.
29. Suh Y, Thien LB, Reeve HE, Zimmer EA (1993) Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American Journal of Botany, 80, 1042-1055.
30. Swofford DL (1993) PAUP: Phylogenetic Analysis Using Parsimony, Version 3.1.1. Computer program distributed by the Illinois Natural History Survey, Champaign, Illinois.
31. Vogler AP, DeSalle R (1994) Evolution and phylogenetic information content of the ITS-1 region in the tiger beetle Cicindela dorsalis. Molecular Biology and Evolution, 11, 393-405.
32. Wang B, Fang Q, Williams WV, Weuber DB (1992) Double-stranded DNA sequencing by linear amplification with Taq DNA polymerase. Biotechniques, 13, 527-529.
33. Wu CI, Li WH (1985) Evidence for higher rates of nucleotide substitution in rodents than in man. Proceedings of the National Academy of Sciences of the USA, 82, 1741-1745.