메뉴 건너뛰기




Volumn 23, Issue 12, 2013, Pages 2003-2012

The shared genomic architecture of human nucleolar organizer regions

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED RNA POLYMERASE; RIBOSOME DNA; RNA 18S;

EID: 84890510066     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.157941.113     Document Type: Article
Times cited : (104)

References (60)
  • 3
    • 33745373606 scopus 로고    scopus 로고
    • Primate segmental duplications: Crucibles of evolution, diversity and disease
    • Bailey JA, Eichler EE. 2006. Primate segmental duplications: Crucibles of evolution, diversity and disease. Nat Rev Genet 7: 552-564
    • (2006) Nat Rev Genet , vol.7 , pp. 552-564
    • Bailey, J.A.1    Eichler, E.E.2
  • 4
    • 0034831138 scopus 로고    scopus 로고
    • Segmental duplications: Organization and impact within the current human genome project assembly
    • Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE. 2001. Segmental duplications: Organization and impact within the current human genome project assembly. Genome Res 11: 1005-1017
    • (2001) Genome Res , vol.11 , pp. 1005-1017
    • Bailey, J.A.1    Yavor, A.M.2    Massa, H.F.3    Trask, B.J.4    Eichler, E.E.5
  • 7
    • 0033611568 scopus 로고    scopus 로고
    • P53 represses ribosomal gene transcription
    • Budde A, Grummt I. 1999. p53 represses ribosomal gene transcription. Oncogene 18: 1119-1124
    • (1999) Oncogene , vol.18 , pp. 1119-1124
    • Budde, A.1    Grummt, I.2
  • 10
    • 65349143672 scopus 로고    scopus 로고
    • What the nucleolus says to a tumour pathologist
    • Derenzini M, Montanaro L, Trere D. 2009. What the nucleolus says to a tumour pathologist. Histopathology 54: 753-762
    • (2009) Histopathology , vol.54 , pp. 753-762
    • Derenzini, M.1    Montanaro, L.2    Trere, D.3
  • 12
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • The ENCODE Project Consortium
    • The ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489: 57-74
    • (2012) Nature , vol.489 , pp. 57-74
  • 13
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: Automating chromatin-state discovery and characterization
    • Ernst J, KellisM. 2012.ChromHMM: Automating chromatin-state discovery and characterization. Nat Methods 9: 215-216
    • (2012) Nat Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 16
    • 69749092718 scopus 로고    scopus 로고
    • The effect of replication initiation on gene amplification in the rDNA and its relationship to aging
    • Ganley AR, Ide S, Saka K, Kobayashi T. 2009. The effect of replication initiation on gene amplification in the rDNA and its relationship to aging. Mol Cell 35: 683-693
    • (2009) Mol Cell , vol.35 , pp. 683-693
    • Ganley, A.R.1    Ide, S.2    Saka, K.3    Kobayashi, T.4
  • 17
    • 34250369627 scopus 로고    scopus 로고
    • FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin
    • Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD. 2007. FAIRE (formaldehyde-assisted isolation of regulatory elements) isolates active regulatory elements from human chromatin. Genome Res 17: 877-885
    • (2007) Genome Res , vol.17 , pp. 877-885
    • Giresi, P.G.1    Kim, J.2    McDaniell, R.M.3    Iyer, V.R.4    Lieb, J.D.5
  • 18
    • 0030795564 scopus 로고    scopus 로고
    • Beyond ribosomal DNA: On towards the telomere
    • Gonzalez IL, Sylvester JE. 1997. Beyond ribosomal DNA: On towards the telomere. Chromosoma 105: 431-437
    • (1997) Chromosoma , vol.105 , pp. 431-437
    • Gonzalez, I.L.1    Sylvester, J.E.2
  • 20
    • 0038506040 scopus 로고    scopus 로고
    • Life on a planet of its own: Regulation of RNA polymerase 1 transcription in the nucleolus
    • Grummt I. 2003. Life on a planet of its own: Regulation of RNA polymerase 1 transcription in the nucleolus. Genes Dev 17: 1691-1702
    • (2003) Genes Dev , vol.17 , pp. 1691-1702
    • Grummt, I.1
  • 22
    • 0034641878 scopus 로고    scopus 로고
    • Rb and p130 regulate RNA polymerase I transcription: Rb disrupts the interaction between UBF and SL-1
    • Hannan KM, Hannan RD, Smith SD, Jefferson LS, Lun M, Rothblum LI. 2000. Rb and p130 regulate RNA polymerase I transcription: Rb disrupts the interaction between UBF and SL-1. Oncogene 19: 4988-4999
    • (2000) Oncogene , vol.19 , pp. 4988-4999
    • Hannan, K.M.1    Hannan, R.D.2    Smith, S.D.3    Jefferson, L.S.4    Lun, M.5    Rothblum, L.I.6
  • 23
    • 0015422530 scopus 로고
    • Location of ribosomal DNA in the human chromosome complement
    • Henderson AS,Warburton D, Atwood KC. 1972. Location of ribosomal DNA in the human chromosome complement. Proc Natl Acad Sci 69: 3394-3398
    • (1972) Proc Natl Acad Sci , vol.69 , pp. 3394-3398
    • Henderson, A.S.1    Warburton, D.2    Atwood, K.C.3
  • 25
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium. 2004. Finishing the euchromatic sequence of the human genome. Nature 431: 931-945
    • (2004) Nature , vol.431 , pp. 931-945
  • 27
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: The BLAST-like alignment tool
    • Kent WJ. 2002. BLAT: The BLAST-like alignment tool. Genome Res 12: 656-664
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 31
    • 11844291918 scopus 로고    scopus 로고
    • UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase 1 transcription machinery
    • Mais C, Wright JE, Prieto JL, Raggett SL, McStay B. 2005. UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase 1 transcription machinery. Genes Dev 19: 50-64
    • (2005) Genes Dev , vol.19 , pp. 50-64
    • Mais, C.1    Wright, J.E.2    Prieto, J.L.3    Raggett, S.L.4    McStay, B.5
  • 32
    • 0000394947 scopus 로고
    • The relationship of a particular chromosomal element to the development of the nucleoli in Zea Mays
    • McClintock B. 1934. The relationship of a particular chromosomal element to the development of the nucleoli in Zea Mays. Zeit Zellforsch Mik Anat 21: 294-328
    • (1934) Zeit Zellforsch Mik Anat , vol.21 , pp. 294-328
    • McClintock, B.1
  • 33
    • 55849109584 scopus 로고    scopus 로고
    • The epigenetics of rRNA genes: From molecular to chromosome biology
    • McStay B, Grummt I. 2008. The epigenetics of rRNA genes: From molecular to chromosome biology. Annu Rev Cell Dev Biol 24: 131-157
    • (2008) Annu Rev Cell Dev Biol , vol.24 , pp. 131-157
    • McStay, B.1    Grummt, I.2
  • 34
    • 0023731143 scopus 로고
    • A novel centromeric repetitive DNA from human chromosome 22
    • Metzdorf R, Gottert E, Blin N. 1988. A novel centromeric repetitive DNA from human chromosome 22. Chromosoma 97: 154-158
    • (1988) Chromosoma , vol.97 , pp. 154-158
    • Metzdorf, R.1    Gottert, E.2    Blin, N.3
  • 35
    • 79953065005 scopus 로고    scopus 로고
    • Genome organization in and around the nucleolus
    • Nemeth A, Langst G. 2011. Genome organization in and around the nucleolus. Trends Genet 27: 149-156
    • (2011) Trends Genet , vol.27 , pp. 149-156
    • Nemeth, A.1    Langst, G.2
  • 38
    • 67549119096 scopus 로고    scopus 로고
    • CTCF: Master weaver of the genome
    • Phillips JE, Corces VG. 2009. CTCF: Master weaver of the genome. Cell 137: 1194-1211
    • (2009) Cell , vol.137 , pp. 1194-1211
    • Phillips, J.E.1    Corces, V.G.2
  • 39
    • 0003288676 scopus 로고
    • Beitrag zur histologie und aetiologie der carcinoma Histologische und experimentelle untersuchungen
    • Pianese G. 1896. Beitrag zur histologie und aetiologie der carcinoma. Histologische und experimentelle untersuchungen. Beitr Pathol Anat Allgem Pathol 142: 1-193
    • (1896) Beitr Pathol Anat Allgem Pathol , vol.142 , pp. 1-193
    • Pianese, G.1
  • 40
    • 0034916292 scopus 로고    scopus 로고
    • The structure of duplications on human acrocentric chromosome short arms derived by the analysis of 15p
    • Piccini I, Ballarati L, Bassi C, Rocchi M, Marozzi A, Ginelli E, Meneveri R. 2001. The structure of duplications on human acrocentric chromosome short arms derived by the analysis of 15p. Hum Genet 108: 467-477
    • (2001) Hum Genet , vol.108 , pp. 467-477
    • Piccini, I.1    Ballarati, L.2    Bassi, C.3    Rocchi, M.4    Marozzi, A.5    Ginelli, E.6    Meneveri, R.7
  • 41
    • 34547936557 scopus 로고    scopus 로고
    • Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells
    • Prieto JL, McStay B. 2007. Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells. Genes Dev 21: 2041-2054
    • (2007) Genes Dev , vol.21 , pp. 2041-2054
    • Prieto, J.L.1    McStay, B.2
  • 42
    • 0029053229 scopus 로고
    • Human ribosomal RNA gene cluster: Identification of the proximal end containing a novel tandem repeat sequence
    • Sakai K, Ohta T, Minoshima S, Kudoh J, Wang Y, de Jong PJ, Shimizu N. 1995. Human ribosomal RNA gene cluster: Identification of the proximal end containing a novel tandem repeat sequence. Genomics 26: 521-526
    • (1995) Genomics , vol.26 , pp. 521-526
    • Sakai, K.1    Ohta, T.2    Minoshima, S.3    Kudoh, J.4    Wang, Y.5    De Jong, P.J.6    Shimizu, N.7
  • 44
    • 0015541221 scopus 로고
    • Quantitation of human ribosomal DNA: Hybridization of human DNA with ribosomal RNA for quantitation and fractionation
    • Schmickel RD. 1973. Quantitation of human ribosomal DNA: Hybridization of human DNA with ribosomal RNA for quantitation and fractionation. Pediatr Res 7: 5-12
    • (1973) Pediatr Res , vol.7 , pp. 5-12
    • Schmickel, R.D.1
  • 48
    • 84890527229 scopus 로고    scopus 로고
    • Smit A.F.A.,Hubley R.,Green P., 2010
    • Smit AFA, Hubley R,Green P. 2010. RepeatMasker.http://www.repeatmasker. org
  • 50
    • 38049082048 scopus 로고    scopus 로고
    • Genomic architecture and inheritance of human ribosomal RNA gene clusters
    • Stults DM, KillenMW, Pierce HH, Pierce AJ. 2008. Genomic architecture and inheritance of human ribosomal RNA gene clusters. Genome Res 18: 13-18
    • (2008) Genome Res , vol.18 , pp. 13-18
    • Stults, D.M.1    Killen, M.W.2    Pierce, H.H.3    Pierce, A.J.4
  • 51
    • 0035355351 scopus 로고    scopus 로고
    • Human acrocentric chromosomes with transcriptionally silent nucleolar organizer regions associate with nucleoli
    • Sullivan GJ, Bridger JM, Cuthbert AP, Newbold RF, BickmoreWA, McStay B. 2001. Human acrocentric chromosomes with transcriptionally silent nucleolar organizer regions associate with nucleoli. EMBO J 20: 2867- 2874
    • (2001) EMBO J , vol.20 , pp. 2867-2874
    • Sullivan, G.J.1    Bridger, J.M.2    Cuthbert, A.P.3    Newbold, R.F.4    Bickmore, W.A.5    McStay, B.6
  • 52
    • 0024591981 scopus 로고
    • The nonrandom participation of human acrocentric chromosomes in Robertsonian translocations
    • Therman E, Susman B, Denniston C. 1989. The nonrandom participation of human acrocentric chromosomes in Robertsonian translocations. Ann Hum Genet 53: 49-65
    • (1989) Ann Hum Genet , vol.53 , pp. 49-65
    • Therman, E.1    Susman, B.2    Denniston, C.3
  • 53
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25: 1105-1111
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 57
    • 0033614303 scopus 로고    scopus 로고
    • Cfi1 prevents premature exit from mitosis by anchoring Cdc14 phosphatase in the nucleolus
    • Visintin R, Hwang ES, Amon A. 1999. Cfi1 prevents premature exit from mitosis by anchoring Cdc14 phosphatase in the nucleolus. Nature 398: 818-823
    • (1999) Nature , vol.398 , pp. 818-823
    • Visintin, R.1    Hwang, E.S.2    Amon, A.3
  • 59
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 60
    • 34249006523 scopus 로고    scopus 로고
    • Perinucleolar targeting of the inactive X during S phase: Evidence for a role in the maintenance of silencing
    • Zhang LF, Huynh KD, Lee JT. 2007. Perinucleolar targeting of the inactive X during S phase: Evidence for a role in the maintenance of silencing. Cell 129: 693-706
    • (2007) Cell , vol.129 , pp. 693-706
    • Zhang, L.F.1    Huynh, K.D.2    Lee, J.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.