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Volumn 21, Issue 16, 2007, Pages 2041-2054

Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells

Author keywords

Nucleolar organizer region (NOR); Nucleolus; pre rRNA processing; rDNA transcription; t UTPs; UBF

Indexed keywords

DNA DIRECTED RNA POLYMERASE; PHOSPHOPROTEIN; PROTEIN NOPP140; PROTEIN TCOF1 TREACLE; PROTEIN UBF; RIBOSOME DNA; RNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 34547936557     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.436707     Document Type: Article
Times cited : (131)

References (42)
  • 2
    • 33744959048 scopus 로고    scopus 로고
    • Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system
    • Azuma, M., Toyama, R., Laver, E., and Dawid, I.B. 2006. Perturbation of rRNA synthesis in the bap28 mutation leads to apoptosis mediated by p53 in the zebrafish central nervous system. J. Biol. Chem. 281: 13309-13316.
    • (2006) J. Biol. Chem , vol.281 , pp. 13309-13316
    • Azuma, M.1    Toyama, R.2    Laver, E.3    Dawid, I.B.4
  • 4
    • 0033499709 scopus 로고    scopus 로고
    • Human Nopp140, which interacts with RNA polymerase I: Implications for rRNA gene transcription and nucleolar structural organization
    • Chen, H.K., Pai, C.Y., Huang, J.Y., and Yeh, N.H. 1999. Human Nopp140, which interacts with RNA polymerase I: Implications for rRNA gene transcription and nucleolar structural organization. Mol. Cell. Biol. 19: 8536-8546.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 8536-8546
    • Chen, H.K.1    Pai, C.Y.2    Huang, J.Y.3    Yeh, N.H.4
  • 5
    • 0037428520 scopus 로고    scopus 로고
    • RNA-guided nucleotide modification of ribosomal and other RNAs
    • Decatur, W.A. and Fournier, M.J. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278: 695-698.
    • (2003) J. Biol. Chem , vol.278 , pp. 695-698
    • Decatur, W.A.1    Fournier, M.J.2
  • 8
    • 16544382021 scopus 로고    scopus 로고
    • RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components
    • Gallagher, J.E., Dunbar, D.A., Granneman, S., Mitchell, B.M., Osheim, Y., Beyer, A.L., and Baserga, S.J. 2004. RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components. Genes & Dev. 18: 2506-2517.
    • (2004) Genes & Dev , vol.18 , pp. 2506-2517
    • Gallagher, J.E.1    Dunbar, D.A.2    Granneman, S.3    Mitchell, B.M.4    Osheim, Y.5    Beyer, A.L.6    Baserga, S.J.7
  • 9
    • 26444526314 scopus 로고    scopus 로고
    • The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation
    • Gonzales, B., Henning, D., So, R.B., Dixon, J., Dixon, M.J., and Valdez, B.C. 2005. The Treacher Collins syndrome (TCOF1) gene product is involved in pre-rRNA methylation. Hum. Mol. Genet. 14: 2035-2043.
    • (2005) Hum. Mol. Genet , vol.14 , pp. 2035-2043
    • Gonzales, B.1    Henning, D.2    So, R.B.3    Dixon, J.4    Dixon, M.J.5    Valdez, B.C.6
  • 10
    • 18544371820 scopus 로고    scopus 로고
    • 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
    • Grandi, P., Rybin, V., Bassler, J., Petfalski, E., Strauss, D., Marzioch, M., Schafer, T., Kuster, B., Tschochner, H., Tollervey, D., et al. 2002. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol. Cell 10: 105-115.
    • (2002) Mol. Cell , vol.10 , pp. 105-115
    • Grandi, P.1    Rybin, V.2    Bassler, J.3    Petfalski, E.4    Strauss, D.5    Marzioch, M.6    Schafer, T.7    Kuster, B.8    Tschochner, H.9    Tollervey, D.10
  • 11
    • 0037386438 scopus 로고    scopus 로고
    • The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes
    • Granneman, S., Gallagher, J.E., Vogelzangs, J., Horstman, W., van Venrooij, W.J., Baserga, S.J., and Pruijn, G.J. 2003. The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60-80S ribonucleoprotein complexes. Nucleic Acids Res. 31: 1877-1887.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1877-1887
    • Granneman, S.1    Gallagher, J.E.2    Vogelzangs, J.3    Horstman, W.4    van Venrooij, W.J.5    Baserga, S.J.6    Pruijn, G.J.7
  • 12
    • 0027466092 scopus 로고
    • Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis
    • Hadjiolova, K.V., Nicoloso, M., Mazan, S., Hadjiolov, A.A., and Bachellerie, J.P. 1993. Alternative pre-rRNA processing pathways in human cells and their alteration by cycloheximide inhibition of protein synthesis. Eur. J. Biochem. 212: 211-215.
    • (1993) Eur. J. Biochem , vol.212 , pp. 211-215
    • Hadjiolova, K.V.1    Nicoloso, M.2    Mazan, S.3    Hadjiolov, A.A.4    Bachellerie, J.P.5
  • 13
    • 0141668954 scopus 로고    scopus 로고
    • Proteomic analysis of human Nop56p-associated pre-ribosomal ribonucleoprotein complexes. Possible link between Nop56p and the nucleolar protein treacle responsible for Treacher Collins syndrome
    • Hayano, T., Yanagida, M., Yamauchi, Y., Shinkawa, T., Isobe, T., and Takahashi, N. 2003. Proteomic analysis of human Nop56p-associated pre-ribosomal ribonucleoprotein complexes. Possible link between Nop56p and the nucleolar protein treacle responsible for Treacher Collins syndrome. J. Biol. Chem. 278: 34309-34319.
    • (2003) J. Biol. Chem , vol.278 , pp. 34309-34319
    • Hayano, T.1    Yanagida, M.2    Yamauchi, Y.3    Shinkawa, T.4    Isobe, T.5    Takahashi, N.6
  • 14
    • 0029914626 scopus 로고    scopus 로고
    • In vivo evidence that TATA-binding protein/SL1 colocalizes with UBF and RNA polymerase I when rRNA synthesis is either active or inactive
    • Jordan, P., Mannervik, M., Tora, L., and Carmo-Fonseca, M. 1996. In vivo evidence that TATA-binding protein/SL1 colocalizes with UBF and RNA polymerase I when rRNA synthesis is either active or inactive. J. Cell Biol. 133: 225-234.
    • (1996) J. Cell Biol , vol.133 , pp. 225-234
    • Jordan, P.1    Mannervik, M.2    Tora, L.3    Carmo-Fonseca, M.4
  • 15
    • 0023387825 scopus 로고
    • Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific
    • Kass, S., Craig, N., and Sollner, W.B. 1987. Primary processing of mammalian rRNA involves two adjacent cleavages and is not species specific. Mol. Cell. Biol. 7: 2891-2898.
    • (1987) Mol. Cell. Biol , vol.7 , pp. 2891-2898
    • Kass, S.1    Craig, N.2    Sollner, W.B.3
  • 16
    • 0025276512 scopus 로고
    • The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing
    • Kass, S., Tyc, K., Steitz, J.A., and Sollner, W.B. 1990. The U3 small nucleolar ribonucleoprotein functions in the first step of preribosomal RNA processing. Cell 60: 897-908.
    • (1990) Cell , vol.60 , pp. 897-908
    • Kass, S.1    Tyc, K.2    Steitz, J.A.3    Sollner, W.B.4
  • 20
    • 0027500884 scopus 로고
    • Isolation of U3 snoRNP from CHO cells: A novel 55 kDa protein binds to the central part of U3 snoRNA
    • Lubben, B., Marshallsay, C., Rottmann, N., and Luhrmann, R. 1993. Isolation of U3 snoRNP from CHO cells: A novel 55 kDa protein binds to the central part of U3 snoRNA. Nucleic Acids Res. 21: 5377-5385.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5377-5385
    • Lubben, B.1    Marshallsay, C.2    Rottmann, N.3    Luhrmann, R.4
  • 21
    • 11844291918 scopus 로고    scopus 로고
    • UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase I transcription machinery
    • Mais, C., Wright, J.E., Prieto, J.L., Raggett, S.L., and McStay, B. 2005. UBF-binding site arrays form pseudo-NORs and sequester the RNA polymerase I transcription machinery. Genes & Dev. 19: 50-64.
    • (2005) Genes & Dev , vol.19 , pp. 50-64
    • Mais, C.1    Wright, J.E.2    Prieto, J.L.3    Raggett, S.L.4    McStay, B.5
  • 22
    • 19444374397 scopus 로고    scopus 로고
    • The many facets of H/ACA ribonucleoproteins
    • Meier, U.T. 2005. The many facets of H/ACA ribonucleoproteins. Chromosoma 114: 1-14.
    • (2005) Chromosoma , vol.114 , pp. 1-14
    • Meier, U.T.1
  • 23
    • 0028117705 scopus 로고
    • NAP57, a mammalian nucleolar protein with a putative homolog in yeast and bacteria
    • Meier, U.T. and Blobel, G. 1994. NAP57, a mammalian nucleolar protein with a putative homolog in yeast and bacteria. J. Cell Biol. 127: 1505-1514.
    • (1994) J. Cell Biol , vol.127 , pp. 1505-1514
    • Meier, U.T.1    Blobel, G.2
  • 24
    • 0014688424 scopus 로고
    • Visualization of nucleolar genes
    • Miller Jr., O.L. and Beatty, B.R. 1969. Visualization of nucleolar genes. Science 164: 955-957.
    • (1969) Science , vol.164 , pp. 955-957
    • Miller Jr., O.L.1    Beatty, B.R.2
  • 25
    • 0027259044 scopus 로고
    • The terminal balls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes
    • Mougey, E.B., O'Reilly, M., Osheim, Y., Miller, O.J., Beyer, A., and Sollner, W.B. 1993. The terminal balls characteristic of eukaryotic rRNA transcription units in chromatin spreads are rRNA processing complexes. Genes & Dev. 7: 1609-1619.
    • (1993) Genes & Dev , vol.7 , pp. 1609-1619
    • Mougey, E.B.1    O'Reilly, M.2    Osheim, Y.3    Miller, O.J.4    Beyer, A.5    Sollner, W.B.6
  • 26
    • 84965818573 scopus 로고
    • Quantitative aspects of isolation of nucleoli of the Walker carcinosarcoma and liver of the rat
    • Muramatsu, M., Smetana, K., and Busch, H. 1963. Quantitative aspects of isolation of nucleoli of the Walker carcinosarcoma and liver of the rat. Cancer Res. 23: 510-522.
    • (1963) Cancer Res , vol.23 , pp. 510-522
    • Muramatsu, M.1    Smetana, K.2    Busch, H.3
  • 27
    • 31544463601 scopus 로고    scopus 로고
    • Fast chromatin immunoprecipitation assay
    • doi: 10.1093/nar/gnj004
    • Nelson, J.D., Denisenko, O., Sova, P., and Bomsztyk, K. 2006. Fast chromatin immunoprecipitation assay. Nucleic Acids Res. 34: e2. doi: 10.1093/nar/gnj004.
    • (2006) Nucleic Acids Res , vol.34
    • Nelson, J.D.1    Denisenko, O.2    Sova, P.3    Bomsztyk, K.4
  • 28
    • 12144288857 scopus 로고    scopus 로고
    • Sensing cellular stress: Another new function for the nucleolus? Sci. STKE
    • pe10. doi: 10.1126/stke.2242004pe10
    • Olson, M.O. 2004. Sensing cellular stress: Another new function for the nucleolus? Sci. STKE 2004: pe10. doi: 10.1126/stke.2242004pe10.
    • (2004)
    • Olson, M.O.1
  • 29
    • 0036135638 scopus 로고    scopus 로고
    • UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat
    • O'Sullivan, A.C., Sullivan, G.J., and McStay, B. 2002. UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat. Mol. Cell. Biol. 22: 657-668.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 657-668
    • O'Sullivan, A.C.1    Sullivan, G.J.2    McStay, B.3
  • 30
    • 28844477891 scopus 로고    scopus 로고
    • Nucleolar biogenesis: The first small steps
    • Prieto, J.L. and McStay, B. 2005. Nucleolar biogenesis: The first small steps. Biochem. Soc. Trans. 33: 1441-1443.
    • (2005) Biochem. Soc. Trans , vol.33 , pp. 1441-1443
    • Prieto, J.L.1    McStay, B.2
  • 31
    • 33746277552 scopus 로고    scopus 로고
    • Structure and function of the nucleolus in the spotlight
    • Raska, I., Shaw, P.J., and Cmarko, D. 2006. Structure and function of the nucleolus in the spotlight. Curr. Opin. Cell Biol. 18: 325-334.
    • (2006) Curr. Opin. Cell Biol , vol.18 , pp. 325-334
    • Raska, I.1    Shaw, P.J.2    Cmarko, D.3
  • 32
    • 0030006048 scopus 로고    scopus 로고
    • The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs
    • Roussel, P., Andre, C., Comai, L., and Hernandez-Verdun, D. 1996. The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs. J. Cell Biol. 133: 235-246.
    • (1996) J. Cell Biol , vol.133 , pp. 235-246
    • Roussel, P.1    Andre, C.2    Comai, L.3    Hernandez-Verdun, D.4
  • 33
    • 13244264948 scopus 로고    scopus 로고
    • RNA-polymerase-I-directed rDNA transcription, life and works
    • Russell, J. and Zomerdijk, J.C. 2005. RNA-polymerase-I-directed rDNA transcription, life and works. Trends Biochem. Sci. 30: 87-96.
    • (2005) Trends Biochem. Sci , vol.30 , pp. 87-96
    • Russell, J.1    Zomerdijk, J.C.2
  • 35
    • 33344474082 scopus 로고    scopus 로고
    • Growth factor signaling regulates elongation of RNA polymerase I transcription in mammals via UBF phosphorylation and r-chromatin remodeling
    • Stefanovsky, V., Langlois, F., Gagnon-Kugler, T., Rothblum, L.I., and Moss, T. 2006. Growth factor signaling regulates elongation of RNA polymerase I transcription in mammals via UBF phosphorylation and r-chromatin remodeling. Mol. Cell 21: 629-639.
    • (2006) Mol. Cell , vol.21 , pp. 629-639
    • Stefanovsky, V.1    Langlois, F.2    Gagnon-Kugler, T.3    Rothblum, L.I.4    Moss, T.5
  • 37
    • 3242671307 scopus 로고    scopus 로고
    • The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor
    • Valdez, B.C., Henning, D., So, R.B., Dixon, J., and Dixon, M.J. 2004. The Treacher Collins syndrome (TCOF1) gene product is involved in ribosomal DNA gene transcription by interacting with upstream binding factor. Proc. Natl. Acad. Sci. 101: 10709-10714.
    • (2004) Proc. Natl. Acad. Sci , vol.101 , pp. 10709-10714
    • Valdez, B.C.1    Henning, D.2    So, R.B.3    Dixon, J.4    Dixon, M.J.5
  • 38
    • 18744363324 scopus 로고    scopus 로고
    • Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140
    • Wang, C., Query, C.C., and Meier, U.T. 2002. Immunopurified small nucleolar ribonucleoprotein particles pseudouridylate rRNA independently of their association with phosphorylated Nopp140. Mol. Cell. Biol. 22: 8457-8466.
    • (2002) Mol. Cell. Biol , vol.22 , pp. 8457-8466
    • Wang, C.1    Query, C.C.2    Meier, U.T.3
  • 39
    • 0033229970 scopus 로고    scopus 로고
    • The economics of ribosome biosynthesis in yeast
    • Warner, J.R. 1999. The economics of ribosome biosynthesis in yeast. Trends Biochem. Sci. 24: 437-440.
    • (1999) Trends Biochem. Sci , vol.24 , pp. 437-440
    • Warner, J.R.1
  • 40
    • 0035913915 scopus 로고    scopus 로고
    • Nascent ribosomes
    • Warner, J.R. 2001. Nascent ribosomes. Cell 107: 133-136.
    • (2001) Cell , vol.107 , pp. 133-136
    • Warner, J.R.1
  • 41
    • 0034001337 scopus 로고    scopus 로고
    • Conserved composition of mammalian box H/ACA and box C/D small nucleolar ribonucleoprotein particles and their interaction with the common factor Nopp140
    • Yang, Y., Isaac, C., Wang, C., Dragon, F., Pogacic, V., and Meier, U.T. 2000. Conserved composition of mammalian box H/ACA and box C/D small nucleolar ribonucleoprotein particles and their interaction with the common factor Nopp140. Mol. Biol. Cell 11: 567-577.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 567-577
    • Yang, Y.1    Isaac, C.2    Wang, C.3    Dragon, F.4    Pogacic, V.5    Meier, U.T.6
  • 42
    • 27744436483 scopus 로고    scopus 로고
    • Nucleolar localization of cirhin, the protein mutated in North American Indian childhood cirrhosis
    • Yu, B., Mitchell, G.A., and Richter, A. 2005. Nucleolar localization of cirhin, the protein mutated in North American Indian childhood cirrhosis. Exp. Cell Res. 311: 218-228.
    • (2005) Exp. Cell Res , vol.311 , pp. 218-228
    • Yu, B.1    Mitchell, G.A.2    Richter, A.3


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