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Volumn 288, Issue 50, 2013, Pages 36141-36148

Structural insights into the role of the cyclic backbone in a squash trypsin inhibitor

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL TARGETS; CYCLIC PEPTIDES; DIRECT BINDINGS; HOMOLOGOUS PEPTIDE; PROTEOLYTIC STABILITY; STRUCTURAL INSIGHTS; TRYPSIN INHIBITOR; TRYPSIN INHIBITORY ACTIVITY;

EID: 84890416997     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M113.528240     Document Type: Article
Times cited : (33)

References (42)
  • 3
    • 0035933743 scopus 로고    scopus 로고
    • Circular proteins in plants: Solution structure of a novel macrocyclic trypsin inhibitor from Momordica cochinchinensis
    • Felizmenio-Quimio, M. E., Daly, N. L., and Craik, D. J. (2001) Circular proteins in plants: Solution structure of a novel macrocyclic trypsin inhibitor from Momordica cochinchinensis. J. Biol. Chem. 276, 22875-22882
    • (2001) J. Biol. Chem. , vol.276 , pp. 22875-22882
    • Felizmenio-Quimio, M.E.1    Daly, N.L.2    Craik, D.J.3
  • 4
    • 0033579483 scopus 로고    scopus 로고
    • Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif
    • Craik, D. J., Daly, N. L., Bond, T., and Waine, C. (1999) Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif. J. Mol. Biol. 294, 1327-1336
    • (1999) J. Mol. Biol. , vol.294 , pp. 1327-1336
    • Craik, D.J.1    Daly, N.L.2    Bond, T.3    Waine, C.4
  • 5
    • 0035845584 scopus 로고    scopus 로고
    • Biosynthesis and insecticidal properties of plant cyclotides: The cyclic knotted proteins from Oldenlandia affinis
    • Jennings, C., West, J., Waine, C., Craik, D., and Anderson, M. (2001) Biosynthesis and insecticidal properties of plant cyclotides: the cyclic knotted proteins from Oldenlandia affinis. Proc. Natl. Acad. Sci. U.S.A. 98, 10614-10619
    • (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 10614-10619
    • Jennings, C.1    West, J.2    Waine, C.3    Craik, D.4    Anderson, M.5
  • 6
    • 79959965754 scopus 로고    scopus 로고
    • From the Cover: Discovery of an unusual biosynthetic origin for circular proteins in legumes
    • Poth, A. G., Colgrave, M. L., Lyons, R. E., Daly, N. L., and Craik, D. J. (2011) From the Cover: Discovery of an unusual biosynthetic origin for circular proteins in legumes. Proc. Natl. Acad. Sci. U.S.A. 108, 10127-10132
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 10127-10132
    • Poth, A.G.1    Colgrave, M.L.2    Lyons, R.E.3    Daly, N.L.4    Craik, D.J.5
  • 8
    • 79959864353 scopus 로고    scopus 로고
    • Discovery and characterization of novel cyclotides originated from chimeric precursors consisting of albumin-1 chain a and cyclotide domains in the fabaceae family
    • Nguyen, G. K., Zhang, S., Nguyen, N. T., Nguyen, P. Q., Chiu, M. S., Hardjojo, A., and Tam, J. P. (2011) Discovery and characterization of novel cyclotides originated from chimeric precursors consisting of albumin-1 chain a and cyclotide domains in the fabaceae family. J. Biol. Chem. 286, 24275-24287
    • (2011) J. Biol. Chem. , vol.286 , pp. 24275-24287
    • Nguyen, G.K.1    Zhang, S.2    Nguyen, N.T.3    Nguyen, P.Q.4    Chiu, M.S.5    Hardjojo, A.6    Tam, J.P.7
  • 9
    • 79954580823 scopus 로고    scopus 로고
    • Analysis and classification of circular proteins in CyBase
    • Kaas, Q., and Craik, D. J. (2010) Analysis and classification of circular proteins in CyBase. Biopolymers 94, 584-591
    • (2010) Biopolymers , vol.94 , pp. 584-591
    • Kaas, Q.1    Craik, D.J.2
  • 12
    • 33645028340 scopus 로고    scopus 로고
    • The cyclotides and related macrocyclic peptides as scaffolds in drug design
    • Craik, D. J., Cemazar, M., and Daly, N. L. (2006) The cyclotides and related macrocyclic peptides as scaffolds in drug design. Curr. Opin. Drug Discov. Devel. 9, 251-260
    • (2006) Curr. Opin. Drug Discov. Devel. , vol.9 , pp. 251-260
    • Craik, D.J.1    Cemazar, M.2    Daly, N.L.3
  • 13
    • 58149089532 scopus 로고    scopus 로고
    • Engineering stabilized vascular endothelial growth factor-A antagonists: Synthesis, structural characterization, and bioactivity of grafted analogues of cyclotides
    • Gunasekera, S., Foley, F. M., Clark, R. J., Sando, L., Fabri, L. J., Craik, D. J., and Daly, N. L. (2008) Engineering stabilized vascular endothelial growth factor-A antagonists: synthesis, structural characterization, and bioactivity of grafted analogues of cyclotides. J. Med. Chem. 51, 7697-7704
    • (2008) J. Med. Chem. , vol.51 , pp. 7697-7704
    • Gunasekera, S.1    Foley, F.M.2    Clark, R.J.3    Sando, L.4    Fabri, L.J.5    Craik, D.J.6    Daly, N.L.7
  • 14
    • 70350059832 scopus 로고    scopus 로고
    • Potent inhibitors of β-tryptase and human leukocyte elastase based on the MCoTI-II scaffold
    • Thongyoo, P., Bonomelli, C., Leatherbarrow, R. J., and Tate, E. W. (2009) Potent inhibitors of β-tryptase and human leukocyte elastase based on the MCoTI-II scaffold. J. Med. Chem. 52, 6197-6200
    • (2009) J. Med. Chem. , vol.52 , pp. 6197-6200
    • Thongyoo, P.1    Bonomelli, C.2    Leatherbarrow, R.J.3    Tate, E.W.4
  • 16
    • 84871019068 scopus 로고    scopus 로고
    • Design of a novel cyclotide-based CXCR4 antagonist with anti-human immunodeficiency virus (HIV)-1 activity
    • Aboye, T. L., Ha, H., Majumder, S., Christ, F., Debyser, Z., Shekhtman, A., Neamati, N., and Camarero, J. A. (2012) Design of a novel cyclotide-based CXCR4 antagonist with anti-human immunodeficiency virus (HIV)-1 activity. J. Med. Chem. 55, 10729-10734
    • (2012) J. Med. Chem. , vol.55 , pp. 10729-10734
    • Aboye, T.L.1    Ha, H.2    Majumder, S.3    Christ, F.4    Debyser, Z.5    Shekhtman, A.6    Neamati, N.7    Camarero, J.A.8
  • 17
    • 34748922922 scopus 로고    scopus 로고
    • The cyclic cystine knot miniprotein MCoTI-II is internalized into cells by macropinocytosis
    • Greenwood, K. P., Daly, N. L., Brown, D. L., Stow, J. L., and Craik, D. J. (2007) The cyclic cystine knot miniprotein MCoTI-II is internalized into cells by macropinocytosis. Int. J. Biochem. Cell Biol. 39, 2252-2264
    • (2007) Int. J. Biochem. Cell Biol. , vol.39 , pp. 2252-2264
    • Greenwood, K.P.1    Daly, N.L.2    Brown, D.L.3    Stow, J.L.4    Craik, D.J.5
  • 18
    • 33947359890 scopus 로고    scopus 로고
    • NMR as a tool for elucidating the structures of circular and knotted proteins
    • Craik, D. J., and Daly, N. L. (2007) NMR as a tool for elucidating the structures of circular and knotted proteins. Mol. Biosyst. 3, 257-265
    • (2007) Mol. Biosyst. , vol.3 , pp. 257-265
    • Craik, D.J.1    Daly, N.L.2
  • 23
    • 0037470616 scopus 로고    scopus 로고
    • Increased backbone mobility in β-barrel enhances entropy gain driving binding of N-TIMP-1 to MMP-3
    • Arumugam, S., Gao, G., Patton, B. L., Semenchenko, V., Brew, K., and Van Doren, S. R. (2003) Increased backbone mobility in β-barrel enhances entropy gain driving binding of N-TIMP-1 to MMP-3. J. Mol. Biol. 327, 719-734
    • (2003) J. Mol. Biol. , vol.327 , pp. 719-734
    • Arumugam, S.1    Gao, G.2    Patton, B.L.3    Semenchenko, V.4    Brew, K.5    Van Doren, S.R.6
  • 24
    • 0033549108 scopus 로고    scopus 로고
    • Thia zip reaction for synthesis of large cyclic peptides: Mechanisms and applications
    • Tam, J. P., Lu, Y.-A., and Yu, Q. (1999) Thia zip reaction for synthesis of large cyclic peptides: Mechanisms and applications. J. Am. Chem. Soc. 121, 4316-4324
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 4316-4324
    • Tam, J.P.1    Lu, Y.-A.2    Yu, Q.3
  • 25
    • 0033529942 scopus 로고    scopus 로고
    • An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides
    • Tam, J. P., Lu, Y. A., Yang, J. L., and Chiu, K. W. (1999) An unusual structural motif of antimicrobial peptides containing end-to-end macrocycle and cystine-knot disulfides. Proc. Natl. Acad. Sci. U.S.A. 96, 8913-8918
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 8913-8918
    • Tam, J.P.1    Lu, Y.A.2    Yang, J.L.3    Chiu, K.W.4
  • 26
    • 0037458652 scopus 로고    scopus 로고
    • Disulfide folding pathways of cystine knot proteins. Tying the knot within the circular backbone of the cyclotides
    • Daly, N. L., Clark, R. J., and Craik, D. J. (2003) Disulfide folding pathways of cystine knot proteins. Tying the knot within the circular backbone of the cyclotides. J. Biol. Chem. 278, 6314-6322
    • (2003) J. Biol. Chem. , vol.278 , pp. 6314-6322
    • Daly, N.L.1    Clark, R.J.2    Craik, D.J.3
  • 28
    • 0019879388 scopus 로고
    • Nuclear magnetic resonance relaxation in nucleic acid fragments: Models for internal motion
    • Lipari, G., and Szabo, A. (1981) Nuclear magnetic resonance relaxation in nucleic acid fragments: models for internal motion. Biochemistry 20, 6250-6256
    • (1981) Biochemistry , vol.20 , pp. 6250-6256
    • Lipari, G.1    Szabo, A.2
  • 29
    • 0027296226 scopus 로고
    • X-ray diffraction studies of fibrils formed from peptide fragments of transthyretin
    • Jarvis, J. A., Craik, D. J., and Wilce, M. C. (1993) X-ray diffraction studies of fibrils formed from peptide fragments of transthyretin. Biochem. Biophys. Res. Commun. 192, 991-998
    • (1993) Biochem. Biophys. Res. Commun. , vol.192 , pp. 991-998
    • Jarvis, J.A.1    Craik, D.J.2    Wilce, M.C.3
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in osccillation mode
    • Otwinowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in osccillation mode. Methods Enzymol. 276, 307-326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 35
  • 36
    • 0027944205 scopus 로고
    • Synthesis of proteins by native chemical ligation
    • Dawson, P. E., Muir, T. W., Clark-Lewis, I., and Kent, S. B. (1994) Synthesis of proteins by native chemical ligation. Science 266, 776-779
    • (1994) Science , vol.266 , pp. 776-779
    • Dawson, P.E.1    Muir, T.W.2    Clark-Lewis, I.3    Kent, S.B.4
  • 37
    • 33646719091 scopus 로고
    • Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity
    • Lipari, G., and Szabo, A. (1982) Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity. J. Am. Chem. Soc. 104, 4546-4559
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 4546-4559
    • Lipari, G.1    Szabo, A.2
  • 38
    • 0024959382 scopus 로고
    • The refined 2.0 A X-ray crystal structure of the complex formed between bovine β-trypsin and CMTI-I, a trypsin inhibitor from squash seeds (Cucurbita maxima). Topological similarity of the squash seed inhibitors with the carboxypeptidase A inhibitor from potatoes
    • Bode, W., Greyling, H. J., Huber, R., Otlewski, J., and Wilusz, T. (1989) The refined 2.0 A X-ray crystal structure of the complex formed between bovine β-trypsin and CMTI-I, a trypsin inhibitor from squash seeds (Cucurbita maxima). Topological similarity of the squash seed inhibitors with the carboxypeptidase A inhibitor from potatoes. FEBS Lett. 242, 285-292
    • (1989) FEBS Lett. , vol.242 , pp. 285-292
    • Bode, W.1    Greyling, H.J.2    Huber, R.3    Otlewski, J.4    Wilusz, T.5
  • 42
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wüthrich, K. (1996) MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14, 51-55
    • (1996) J. Mol. Graph. , vol.14 , pp. 51-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3


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