Disulfide folding pathways of cystine knot proteins: Tying the knot within the circular backbone of the cyclotides

Journal of Biological Chemistry

Volumn 278, Issue 8, 2003, Pages 6314-6322

  Daly, Norelle L ^a   Clark, Richard J ^a   Craik, David J ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; OXIDATION; PROTEINS;

CYSTINE KNOT PROTEINS;

BIOCHEMISTRY;

CYCLOTIDE DERIVATIVE; CYSTINE; DISULFIDE; KALATA B1; MACROCYCLIC COMPOUND; UNCLASSIFIED DRUG; CYCLOPEPTIDE; CYCLOTIDE; VEGETABLE PROTEIN;

ARTICLE; MASS SPECTROMETRY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; OXIDATION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN STRUCTURE; REDUCTION; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; OLDENLANDIA; OXIDATION REDUCTION REACTION; PROTEIN CONFORMATION; PROTEIN DENATURATION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; THERMODYNAMICS;

AMINO ACID SEQUENCE; CYCLOTIDES; DISULFIDES; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OLDENLANDIA; OXIDATION-REDUCTION; PEPTIDES, CYCLIC; PLANT PROTEINS; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; THERMODYNAMICS;

EID: 0037458652     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M210492200     Document Type: Article

References (52)

1. Craik, D. J., Daly, N. L., Bond, T., and Waine, C. (1999) J. Mol. Biol. 294, 1327-1336
2. Craik, D. J. (2001) Toxicon 39, 1809-1813
3. Trabi, M., and Craik, D. J. (2002) Trends Biochem. Sci. 27, 132-138
4. Gran, L. (1973) Acta Pharmacol. Toxicol. 33, 400-408
5. Witherup, K. M., Bogusky, M. J., Anderson, P. S., Ramjit, H., Ransom, R. W., Wood, T., and Sardana, M. (1994) J. Nat. Prod. 57, 1619-1625
6. Daly, N. L., Love, S., Alewood, P. F., and Craik, D. J. (1999) Biochemistry 38, 10606-10614
7. Tam, J. P., Lu, Y. A., Yang, J. L., and Chiu, K. W. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 8913-8918
8. Gustafson, K. R., Sowder II, R. C., Henderson, L. E., Parsons, I. C., Kashman, Y., Cardellina II, J. H., McMahon, J. B., Buckheit Jr., R. W., Pannell, L. K., and Boyd, M. R. (1994) J. Am. Chem. Soc. 116, 9337-9338
9. Jennings, C., West, J., Waine, C., Craik, D., and Anderson, M. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 10614-10619
10. Hernandez, J. F., Gagnon, J., Chiche, L., Nguyen, T. M., Andrieu, J. P., Heitz, A., Trinh Hong, T., Pham, T. T., and Le Nguyen, D. (2000) Biochemistry 39, 5722-5730
11. Saether, O., Craik, D. J., Campbell, I. D., Sletten, K., Juul, J., and Norman, D. G. (1995) Biochemistry 34, 4147-4158
12. Daly, N. L., Koltay, A., Gustafson, K. R., Boyd, M. R., Casas-Finet, J. R., and Craik, D. J. (1999) J. Mol. Biol. 285, 333-345
13. Felizmenio-Quimio, M. E., Daly, N. L., and Craik, D. J. (2001) J. Biol. Chem. 276, 22875-22882
14. Heitz, A., Hernandez, J. F., Gagnon, J., Hong, T. T., Pham, T. T., Nguyen, T. M., Le-Nguyen, D., and Chiche, L. (2001) Biochemistry 40, 7973-7983
15. Tam, J. P., Lu, Y. A., Yang, J. L., and Yu, Q. (2001) Development of Novel Antimicrobial Agents: Emerging Strategies, pp. 215-240, Horizon Scientific Press, Wymondham, UK
16. Skjeldal, L., Gran, L., Sletten, K., and Volkman, B. F. (2002) Arch. Biochem. Biophys. 399, 142-148
17. Favel, A., Mattras, H., Coletti-Previero, M. A., Zwilling, R., Robinson, E. A., and Castro, B. (1989) Int. J. Pept. Protein Res. 33, 202-208
18. Wieczorek, M., Otlewski, J., Cook, J., Parks, K., Leluk, J., Wilimowska-Pelc, A., Polanowski, A., Wilusz, T., and Laskowski, M., Jr. (1985) Biochem. Biophys. Res. Commun. 126, 646-652
19. Heitz, A., Chiche, L., Le-Nguyen, D., and Castro, B. (1989) Biochemistry 28, 2392-2398
20. Bode, W., Greyling, H. J., Huber, R., Otlewski, J., and Wilusz, T. (1989) FEBS Lett. 242, 285-292
21. Daly, N. L., and Craik, D. J. (2000) J. Biol. Chem. 275, 19068-19075
22. Le-Nguyen, D., Heitz, A., Chiche, L., El Hajji, M., and Castro, B. (1993) Protein Sci. 2, 165-174
23. Marion, D., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 113, 967-974
24. Braunschweiler, L., and Ernst, R. R. (1983) J. Magn. Reson. 53, 521-528
25. Bax, A., and Davis, D. G. (1985) J. Magn. Reson. 65, 355-360
26. Rance, M., Sørensen, O. W., Bodenhausen, G., Wagner, G., Ernst, R. R., and Wüthrich, K. (1983) Biochem. Biophys. Res. Commun. 117, 479-485
27. Griesinger, C., Sørensen, O. W., and Ernst, R. R. (1987) J. Magn. Reson. 75, 474-492
28. Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) J. Chem. Phys. 71, 4546-4553
29. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-665
30. Guntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298
31. Brünger, A. T., Adams, P. D., and Rice, L. M. (1997) Structure 5, 325-336
32. Rice, L. M., and Brünger, A. T. (1994) Proteins 19, 277-290
33. Stein, E. G., Rice, L. M., and Brünger, A. T. (1997) J. Magn. Reson. 124, 154-164
34. Linge, J. P., and Nilges, M. (1999) J. Biomol. NMR 13, 51-59
35. Hutchinson, E. G., and Thornton, J. M. (1996) Protein Sci. 5, 212-220
36. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
37. Weissman, J. S., and Kim, P. S. (1991) Science 253, 1386-1393
38. van den Berg, B., Chung, E. W., Robinson, C. V., Mateo, P. L., and Dobson, C. M. (1999) EMBO J. 18, 4794-4803
39. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley-Interscience, New York
40. Craik, D. J., Simonsen, S., and Daly, N. L. (2002) Curr. Opin. Drug Discov. Devel. 5, 251-260
41. Craik, D. J., Anderson, M. A., Barry, D. G., Clark, R. J., Daly, N. L., Jennings, C. V., and Mulvenna, J. (2002) Let. Pep. Sci. 8, 119-128
42. Derua, R., Gustafson, K. R., and Pannell, L. K. (1996) Biochem. Biophys. Res. Commun. 228, 632-638
43. Rosengren, K. J., Daly, N. L., Plan, M. R., Waine, C., and Craik, D. J. (December 12, 2002) J. Biol. Chem. 10.1074/jbcm211147200
44. Chang, J.-Y., Li, L., and Lai, P.-H. (2001) J. Biol. Chem. 276, 4845-4852
45. English, B. P., Welker, E., Narayan, M., and Scheraga, H. A. (2002) J. Am. Chem. Soc. 124, 4995-4999
46. Li, Y. J., Rothwarf, D. M., and Scheraga, H. A. (1995) Nat. Struct. Biol. 2, 489-494
47. Chang, J. Y., Li, L., and Bulychev, A. (2000) J. Biol. Chem. 275, 8287-8289
48. Darling, R. J., Wilken, J. A., Ruddon, R. W., and Bedows, E. (2001) Biochemistry 40, 577-585
49. Pallaghy, P. K., Nielsen, K. J., Craik, D. J., and Norton, R. S. (1994) Protein Sci. 3, 1833-1839
50. Craik, D. J., Daly, N. L., and Waine, C. (2001) Toxicon 39, 43-60
51. Wishart, D. S., Bigam, C. G., Holm, A., Hodges, R. S., and Sykes, B. D. (1995) J. Biomol. NMR 5, 67-81
52. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graph. 14, 51-55, 29-32