메뉴 건너뛰기




Volumn , Issue , 2007, Pages 319-355

Clustering Methods in a Protein-Protein Interaction Network

Author keywords

Clustering approaches for PPI networks; Clustering methods in protein protein interaction network; Molecular Complex Detection (MCODE)

Indexed keywords


EID: 84889619993     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470124642.ch16     Document Type: Chapter
Times cited : (25)

References (96)
  • 1
    • 84889622602 scopus 로고    scopus 로고
    • http://www.plbio.kvl.dk/dacoj3/resource/yeast_2H.htm.
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • R. Aebersold and M. Mann. Mass spectrometry-based proteomics. Nature, 422:198-207, 2003.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • R. Albert and A. Barabasi. Statistical mechanics of complex networks. Rev. Mod. Phys., 74:47-97, 2002.
    • (2002) Rev. Mod. Phys. , vol.74 , pp. 47-97
    • Albert, R.1    Barabasi, A.2
  • 4
    • 0141484562 scopus 로고    scopus 로고
    • Biological networks: the tinkerer as an engineer Science
    • U. Alon. Biological networks: the tinkerer as an engineer Science, 301:1866-1867, 2003.
    • (2003) , vol.301 , pp. 1866-1867
    • Alon, U.1
  • 6
    • 13844264514 scopus 로고    scopus 로고
    • Iterative cluster analysis of protein interaction data Bioinformatics
    • V. Arnau, S. Mars, and I. Marin. Iterative cluster analysis of protein interaction data Bioinformatics, 21:364-378, 2005.
    • (2005) , vol.21 , pp. 364-378
    • Arnau, V.1    Mars, S.2    Marin, I.3
  • 7
    • 0035987407 scopus 로고    scopus 로고
    • Post-yeast-two hybrid era of interactive proteomics: facts and perspectives Proteomics
    • D. Auerbach, S. Thaminy, M. O. Hottiger, and I. Stagljar. Post-yeast-two hybrid era of interactive proteomics: facts and perspectives Proteomics, 2:611-623, 2002.
    • (2002) , vol.2 , pp. 611-623
    • Auerbach, D.1    Thaminy, S.2    Hottiger, M.O.3    Stagljar, I.4
  • 8
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks
    • G. D. Bader and C. W. Hogue. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinf., 4:2, 2003.
    • (2003) BMC Bioinf , vol.4 , pp. 2
    • Bader, G.D.1    Hogue, C.W.2
  • 9
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • A. L. Barabasi and Z. N. Oltvai. Network biology: understanding the cell's functional organization. Nat. Rev., 5:101-113, 2004.
    • (2004) Nat. Rev. , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 11
    • 0000521616 scopus 로고    scopus 로고
    • Superparamagnetic clustering of data
    • M. Blatt, S. Wiseman, and E. Domany. Superparamagnetic clustering of data. Phys. Rev. Lett., 76:3251-3254, 1996.
    • (1996) Phys. Rev. Lett. , vol.76 , pp. 3251-3254
    • Blatt, M.1    Wiseman, S.2    Domany, E.3
  • 13
    • 0038074373 scopus 로고    scopus 로고
    • Topological structure analysis of the protein-protein interaction network in budding yeast
    • D. Bu, Y. Zhao, L. Cai, H. Xue, X. Zhu, et al. Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res., 31:2443-2450, 2003.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2443-2450
    • Bu, D.1    Zhao, Y.2    Cai, L.3    Xue, H.4    Zhu, X.5
  • 14
    • 0037058980 scopus 로고    scopus 로고
    • The average distances in random graphs with given expected degrees
    • F. Chung and L. Lu. The average distances in random graphs with given expected degrees. Proc. Natl. Acad. Sci., 99:15879-15882, 2002.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 15879-15882
    • Chung, F.1    Lu, L.2
  • 15
    • 0037423295 scopus 로고    scopus 로고
    • Scale-free networks are ultra small
    • R. Cohen and S. Havlin. Scale-free networks are ultra small. Phys. Rev. Lett., 90:058701, 2003.
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 058701
    • Cohen, R.1    Havlin, S.2
  • 17
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: a fingerprint of proteins that physically interact
    • T. Dandekar. et al. Conservation of gene order: a fingerprint of proteins that physically interact. Trends Biochem. Sci., 23:324-328, 1998.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 324-328
    • Dandekar, T.1
  • 18
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction
    • M. Deng, F. Sun, and T. Chen. Assessment of the reliability of protein-protein interactions and protein function prediction. Pac. Symp. Biocomput., pp. 140-151, 2003.
    • (2003) Pac. Symp. Biocomput. , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3
  • 19
    • 0032983270 scopus 로고    scopus 로고
    • Progress and variations in two-hybrid and three-hybrid technologies
    • B. L. Drees. Progress and variations in two-hybrid and three-hybrid technologies. Curr. Opin. Chem. Biol., 3:64-70, 1999.
    • (1999) Curr. Opin. Chem. Biol. , vol.3 , pp. 64-70
    • Drees, B.L.1
  • 20
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • M. B. Eisen, P. T. Spellman, P. O. Brown, and D. Botstein. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci., 95:14863-14868, 1998.
    • (1998) Proc. Natl. Acad. Sci. , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 21
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • A. J. Enright, S. van Dongen, and C. A. Ouzounis. An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res., 30:1575-1584, 2002.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 22
    • 0033764169 scopus 로고    scopus 로고
    • The small world of metabolism
    • D. A. Fell and A. Wagner. The small world of metabolism. Nat. Biotechnol., 18: 1121-1122, 2000.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 1121-1122
    • Fell, D.A.1    Wagner, A.2
  • 23
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • S. Fields and O. Song. A novel genetic system to detect protein-protein interactions. Nature, 340(6230):245-246, 1989.
    • (1989) Nature , vol.340 , Issue.6230 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 25
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • A. C. Gavin, et al. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature, 415:141-147, 2002.
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1
  • 27
    • 0034710876 scopus 로고    scopus 로고
    • Coupled two-way clustering analysis of gene microarray data
    • G. Getz, E. Levine, and E. Domany. Coupled two-way clustering analysis of gene microarray data. Proc. Natl. Acad. Sci., 97:12079-12084, 2000.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 12079-12084
    • Getz, G.1    Levine, E.2    Domany, E.3
  • 28
    • 0036499870 scopus 로고    scopus 로고
    • Automated assignment of SCOP and CATH protein structure classifications from FSSP scores
    • G. Getz, M. Vendruscolo, D. Sachs, and E. Domany. Automated assignment of SCOP and CATH protein structure classifications from FSSP scores. Proteins, 46:405-415, 2002.
    • (2002) Proteins , vol.46 , pp. 405-415
    • Getz, G.1    Vendruscolo, M.2    Sachs, D.3    Domany, E.4
  • 29
    • 0345600247 scopus 로고    scopus 로고
    • A protein interaction map of Drosophila melanogaster
    • L. Giot, et al. A protein interaction map of Drosophila melanogaster. Science, 302: 1727-1736, 2003.
    • (2003) Science , vol.302 , pp. 1727-1736
    • Giot, L.1
  • 30
    • 84889629679 scopus 로고    scopus 로고
    • The choice of optimal distance measure in genome-wide data sets
    • G. Glazko, A. Gordon, and A. Mushegian. The choice of optimal distance measure in genome-wide data sets. 2005.
    • (2005)
    • Glazko, G.1    Gordon, A.2    Mushegian, A.3
  • 31
    • 0000411214 scopus 로고
    • Tabu search
    • F. Glover. Tabu search. ORSA J. Comput., 1:190-206, 1989.
    • (1989) ORSA J. Comput. , vol.1 , pp. 190-206
    • Glover, F.1
  • 32
    • 0037447257 scopus 로고    scopus 로고
    • Assessing experimentally derived interactions in a small world
    • D. S. Goldberg and F. P. Roth. Assessing experimentally derived interactions in a small world. Proc. Natl. Acad. Sci., 100:4372-4376, 2003.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 4372-4376
    • Goldberg, D.S.1    Roth, F.P.2
  • 33
    • 0034515528 scopus 로고    scopus 로고
    • Clustering algorithm based graph connectivity
    • E. Hartuv and R. A. Shamir. Clustering algorithm based graph connectivity. Inf. Process. Lett., 76:175-181, 2000.
    • (2000) Inf. Process. Lett. , vol.76 , pp. 175-181
    • Hartuv, E.1    Shamir, R.A.2
  • 35
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Y. Ho et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature, 415:180-183, 2002.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1
  • 36
    • 0035836765 scopus 로고    scopus 로고
    • A comprehensive two-hybrid analysis to explore the yeast protein interactome
    • T. Ito, T. Chiba, R. Ozawa, M. Yoshida, et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci., 98:4569-4574, 2001.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 4569-4574
    • Ito, T.1    Chiba, T.2    Ozawa, R.3    Yoshida, M.4
  • 39
    • 0142052944 scopus 로고    scopus 로고
    • A Bayesian networks approach for predicting protein-protein interactions from genomic data
    • R. A. Jansen et al. A Bayesian networks approach for predicting protein-protein interactions from genomic data. Science, 302:449-453, 2003.
    • (2003) Science , vol.302 , pp. 449-453
    • Jansen, R.A.1
  • 40
    • 0036141992 scopus 로고    scopus 로고
    • Relating whole-genome expression data with protein-protein interactions
    • R. Jansen et al. Relating whole-genome expression data with protein-protein interactions. Genome Res., 12:37-46, 2002.
    • (2002) Genome Res. , vol.12 , pp. 37-46
    • Jansen, R.1
  • 41
  • 42
    • 13844276694 scopus 로고    scopus 로고
    • Cluster analysis for gene expression data: a survey
    • D. Jiang, C. Tang, and A. Zhang. Cluster analysis for gene expression data: a survey. IEEE Trans. Knowledge Data Eng., 16:1370-1386, 2004.
    • (2004) IEEE Trans. Knowledge Data Eng. , vol.16 , pp. 1370-1386
    • Jiang, D.1    Tang, C.2    Zhang, A.3
  • 43
    • 0028080090 scopus 로고
    • Split ubiquitin as a sensor of protein interactions in vivo
    • N. Johnsson and A. Varshavsky. Split ubiquitin as a sensor of protein interactions in vivo. Proc. Natl. Acad. Sci., 91:10340-10344, 1994.
    • (1994) Proc. Natl. Acad. Sci. , vol.91 , pp. 10340-10344
    • Johnsson, N.1    Varshavsky, A.2
  • 44
    • 0030028728 scopus 로고    scopus 로고
    • Principles of protein-protein interactions
    • S. Jones and J. M. Thornton. Principles of protein-protein interactions. Proc. Natl. Acad. Sci., 93:13-20, 1996.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 13-20
    • Jones, S.1    Thornton, J.M.2
  • 45
    • 10244264813 scopus 로고    scopus 로고
    • Protein complex prediction via cost-based clustering
    • A. D. King, N. Przulj, and I. Jurisica. Protein complex prediction via cost-based clustering. Bioinformatics, 20:3013-3020, 2004.
    • (2004) Bioinformatics , vol.20 , pp. 3013-3020
    • King, A.D.1    Przulj, N.2    Jurisica, I.3
  • 46
    • 0037079014 scopus 로고    scopus 로고
    • The structure of the protein universe and genome evolution
    • E. V. Koonin, Y. I.Wolf, and G. P. Karev. The structure of the protein universe and genome evolution. Nature, 420:218-223, 2002.
    • (2002) Nature , vol.420 , pp. 218-223
    • Koonin, E.V.1    Wolf, Y.I.2    Karev, G.P.3
  • 47
    • 0036499057 scopus 로고    scopus 로고
    • SHOT: aWeb server for the construction of genome phylogenies
    • J. O. Korbel, B. Snel, M. A. Huynen, and P. Bork. SHOT: aWeb server for the construction of genome phylogenies. Trends Genet., 18:159-162, 2002.
    • (2002) Trends Genet. , vol.18 , pp. 159-162
    • Korbel, J.O.1    Snel, B.2    Huynen, M.A.3    Bork, P.4
  • 48
    • 0142148210 scopus 로고    scopus 로고
    • A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens
    • R. Krause, C. von Mering, and P. Bork. A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens. Bioinformatics, 19:1901-1908, 2003.
    • (2003) Bioinformatics , vol.19 , pp. 1901-1908
    • Krause, R.1    Von Mering, C.2    Bork, P.3
  • 49
    • 0037050020 scopus 로고    scopus 로고
    • Protein complexes take the bait
    • A. Kumar and M. Snyder. Protein complexes take the bait. Nature, 415:123-124, 2002.
    • (2002) Nature , vol.415 , pp. 123-124
    • Kumar, A.1    Snyder, M.2
  • 50
    • 0035350894 scopus 로고    scopus 로고
    • Mass spectrometry allows direct identification of proteins in large genomes
    • B. Kuster, P. Mortensen, J. S. Andersen, and M. Mann. Mass spectrometry allows direct identification of proteins in large genomes. Protemics, 1:641-650, 2001.
    • (2001) Protemics , vol.1 , pp. 641-650
    • Kuster, B.1    Mortensen, P.2    Andersen, J.S.3    Mann, M.4
  • 51
    • 0037015610 scopus 로고    scopus 로고
    • Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry
    • E. Lasonder et al. Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry. Nature, 419:537-542, 2002.
    • (2002) Nature , vol.419 , pp. 537-542
    • Lasonder, E.1
  • 52
    • 0036707991 scopus 로고    scopus 로고
    • Modern analytical ultracentrifugation in protein science: a tutorial review
    • J. Lebowitz, M. S. Lewis, and P. Schuck. Modern analytical ultracentrifugation in protein science: a tutorial review. Protein Sci., 11:2067-2079, 2002.
    • (2002) Protein Sci. , vol.11 , pp. 2067-2079
    • Lebowitz, J.1    Lewis, M.S.2    Schuck, P.3
  • 53
    • 9144264169 scopus 로고    scopus 로고
    • A map of the interactome network of the metazoan
    • S. Li et al. A map of the interactome network of the metazoan. Science, 303:540-543, 2004.
    • (2004) Science , vol.303 , pp. 540-543
    • Li, S.1
  • 54
    • 0034622925 scopus 로고    scopus 로고
    • Printing proteins as microarrays for high-throughput function determination
    • G. MacBeath and S. L. Schreiber. Printing proteins as microarrays for high-throughput function determination. Science, 289:1760-1763, 2000.
    • (2000) Science , vol.289 , pp. 1760-1763
    • MacBeath, G.1    Schreiber, S.L.2
  • 55
    • 0036605185 scopus 로고    scopus 로고
    • Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome
    • M. Mann et al. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends Biotechnol., 20:261-268, 2002.
    • (2002) Trends Biotechnol. , vol.20 , pp. 261-268
    • Mann, M.1
  • 56
    • 0037338365 scopus 로고    scopus 로고
    • Proteomic analysis of post-translational modifications
    • M. Mann and O. N. Jensen. Proteomic analysis of post-translational modifications. Nat. Biotechnol., 21:255-261, 2003.
    • (2003) Nat. Biotechnol. , vol.21 , pp. 255-261
    • Mann, M.1    Jensen, O.N.2
  • 57
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • E. M. Marcotte et al. Detecting protein function and protein-protein interactions from genome sequences. Science, 285:751-753, 1999.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1
  • 58
    • 0033523854 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • E. M. Marcotte et al. Detecting protein function and protein-protein interactions from genome sequences. Nature, 402:83-86, 1999.
    • (1999) Nature , vol.402 , pp. 83-86
    • Marcotte, E.M.1
  • 59
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • S. Maslov and K. Sneppen. Specificity and stability in topology of protein networks. Science, 296:910-913, 2002.
    • (2002) Science , vol.296 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 60
    • 9144242935 scopus 로고    scopus 로고
    • MIPS: analysis and annotation of proteins from whole genomes
    • H. W. Mewes et al. MIPS: analysis and annotation of proteins from whole genomes. Nucleic Acids Res., 32:D41-D44, 2004.
    • (2004) Nucleic Acids Res , vol.32
    • Mewes, H.W.1
  • 61
    • 0002687371 scopus 로고
    • The small world problem
    • S. Milgram. The small world problem. Psychol. Today, 2:60, 1967.
    • (1967) Psychol. Today , vol.2 , pp. 60
    • Milgram, S.1
  • 62
    • 28944451662 scopus 로고    scopus 로고
    • A top-down method for building genome classification trees with linear binary hierarchies
    • B. Mirkin and E. V. Koonin. A top-down method for building genome classification trees with linear binary hierarchies. Bioconsensus, 61:97-112, 2003.
    • (2003) Bioconsensus , vol.61 , pp. 97-112
    • Mirkin, B.1    Koonin, E.V.2
  • 63
    • 0035895239 scopus 로고    scopus 로고
    • Network construction and fundamental results
    • M. E. Newman. Network construction and fundamental results. Proc. Natl. Acad. Sci., 98:404-409, 2001.
    • (2001) Proc. Natl. Acad. Sci. , vol.98 , pp. 404-409
    • Newman, M.E.1
  • 64
    • 0041312697 scopus 로고    scopus 로고
    • Diversity of protein-protein interactions
    • I. M. A. Nooren and J. M. Thornton. Diversity of protein-protein interactions. EMBO J., 22:3486-3492, 2003.
    • (2003) EMBO J. , vol.22 , pp. 3486-3492
    • Nooren, I.M.A.1    Thornton, J.M.2
  • 65
    • 0037229456 scopus 로고    scopus 로고
    • Analyzing six types of protein-protein interfaces
    • Y. Ofran and B. Rost. Analyzing six types of protein-protein interfaces. J. Mol. Biol., 325:377-387, 2003.
    • (2003) J. Mol. Biol. , vol.325 , pp. 377-387
    • Ofran, Y.1    Rost, B.2
  • 66
    • 0033009569 scopus 로고    scopus 로고
    • Analysis of protein-protein interactions by mutagenesis: direct versus indirect effects
    • D. E. Otzen and A. R. Fersht. Analysis of protein-protein interactions by mutagenesis: direct versus indirect effects. Protein Eng., 12:41-45, 1999.
    • (1999) Protein Eng. , vol.12 , pp. 41-45
    • Otzen, D.E.1    Fersht, A.R.2
  • 67
    • 0036083294 scopus 로고    scopus 로고
    • Extraction of knowledge on protein-protein interaction by association rule discovery
    • T. Oyama et al. Extraction of knowledge on protein-protein interaction by association rule discovery. Bioinformatics, 18:705-714, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 705-714
    • Oyama, T.1
  • 68
    • 0037370373 scopus 로고    scopus 로고
    • Proteomics: the first decade and beyond
    • S. D. Patterson and R. H. Aebersold. Proteomics: the first decade and beyond. Nat. Genet., 33:311-323, 2003.
    • (2003) Nat. Genet. , vol.33 , pp. 311-323
    • Patterson, S.D.1    Aebersold, R.H.2
  • 71
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
    • M. Pellegrini et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl. Acad. Sci., 96:4285-4288, 1999.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 4285-4288
    • Pellegrini, M.1
  • 72
    • 0012732777 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome
    • J. Peng, J. E. Elias, C. C. Thoreen, L. J. Licklider, and S. P. Gygi. Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res., 10:1021, 2002.
    • (2002) J. Proteome Res. , vol.10 , pp. 1021
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 74
    • 0028926048 scopus 로고
    • Protein-protein interactions: methods for detection and analysis
    • E. M. Phizicky and S. Fields. Protein-protein interactions: methods for detection and analysis. Microbiol. Rev., 59:94-123, 1995
    • (1995) Microbiol. Rev. , vol.59 , pp. 94-123
    • Phizicky, E.M.1    Fields, S.2
  • 75
    • 0037417817 scopus 로고    scopus 로고
    • Modular organization of cellular networks
    • A.W. Rives and T. Galitski. Modular organization of cellular networks. Proc. Natl. Acad. Sci., 100(3):1128-33, 2003.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , Issue.3 , pp. 1128-1133
    • Rives, A.W.1    Galitski, T.2
  • 76
    • 0242268461 scopus 로고    scopus 로고
    • Redundancies in large-scale protein interaction networks
    • M. P. Samanta and S. Liang. Redundancies in large-scale protein interaction networks. Proc. Natl. Acad. Sci., 100:12579-12583, 2003.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 12579-12583
    • Samanta, M.P.1    Liang, S.2
  • 77
    • 0037022306 scopus 로고    scopus 로고
    • Global organization of the WordNet lexicon
    • M. Sigman and G. A. Cecchi. Global organization of the WordNet lexicon. Proc. Natl. Acad. Sci., 99:1742-1747, 2002.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 1742-1747
    • Sigman, M.1    Cecchi, G.A.2
  • 79
    • 0036213334 scopus 로고    scopus 로고
    • Interaction of proteins in solution from small angle scattering: a perturbative approach
    • F. Spinozzi, D. Gazzillo. A. Giacometti, P. Mariani, and F. Carsughi. Interaction of proteins in solution from small angle scattering: a perturbative approach. J. Biophys., 82:2165-2175, 2002.
    • (2002) J. Biophys. , vol.82 , pp. 2165-2175
    • Spinozzi, F.1    Giacometti, D.2    Gazzillo, A.3    Mariani, P.4    Carsughi, F.5
  • 80
    • 0142059836 scopus 로고    scopus 로고
    • Protein complexes and functional modules in molecular networks
    • V. Spirin and L. A. Mirny. Protein complexes and functional modules in molecular networks. Proc. Natl. Acad. Sci., 100:12123-12128, 2003.
    • (2003) Proc. Natl. Acad. Sci. , vol.100 , pp. 12123-12128
    • Spirin, V.1    Mirny, L.A.2
  • 82
    • 23744454242 scopus 로고    scopus 로고
    • A new cluster algorithm for graphs
    • Technical Report INS-R0010. Center for Mathematics and Computer Science (CWI), Amsterdam, Netherlands
    • S. Van Dongen. A new cluster algorithm for graphs. Technical Report INS-R0010. Center for Mathematics and Computer Science (CWI), Amsterdam, Netherlands, 2000.
    • (2000)
    • Van Dongen, S.1
  • 83
    • 2142794241 scopus 로고    scopus 로고
    • Performance criteria for graph clustering and markov cluster experiments
    • Technical Report INS-R0012. Center for Mathematics and Computer Science (CWI). Amsterdam, Netherlands
    • S. Van Dongen. Performance criteria for graph clustering and markov cluster experiments. Technical Report INS-R0012. Center for Mathematics and Computer Science (CWI). Amsterdam, Netherlands, 2000.
    • (2000)
    • Van Dongen, S.1
  • 84
    • 0036872411 scopus 로고    scopus 로고
    • Protein-protein interactions: mechanisms and modification by drugs
    • A. V. Veselovsky, Y. D. Ivanov, A. S. Ivanov, and A. I. J. Archakov. Protein-protein interactions: mechanisms and modification by drugs. Mol. Recognit., 15:405-422, 2002.
    • (2002) Mol. Recognit. , vol.15 , pp. 405-422
    • Veselovsky, A.V.1    Ivanov, Y.D.2    Ivanov, A.S.3    Archakov, A.I.J.4
  • 85
    • 12644281415 scopus 로고    scopus 로고
    • The Two-Hybrid System
    • Oxford University Press, New York
    • M. Vidal. The Two-Hybrid System, p. 109. Oxford University Press, New York, 1997.
    • (1997) , pp. 109
    • Vidal, M.1
  • 86
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • C. von Mering, R. Krause, B. Snel, M. Cornell, and S. G. Oliver. Comparative assessment of large-scale data sets of protein-protein interactions. Nature, 417:399-403, 2002.
    • (2002) Nature , vol.417 , pp. 399-403
    • Von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5
  • 87
    • 0034943378 scopus 로고    scopus 로고
    • The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes
    • A. Wagner. The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. Mol. Biol. Evol., 18:1283-1292, 2001.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1283-1292
    • Wagner, A.1
  • 88
    • 0037423828 scopus 로고    scopus 로고
    • How the global structure of protein interaction networks evolves
    • A. Wagner. How the global structure of protein interaction networks evolves. Proc. R. Soc. London, 270:457-466, 2003.
    • (2003) Proc. R. Soc. London , vol.270 , pp. 457-466
    • Wagner, A.1
  • 89
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • M. P.Washburn, D. Wolters, and J. R. Yates. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol., 19:242-247, 2001.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 90
    • 0004081447 scopus 로고    scopus 로고
    • Small Worlds
    • p. Princeton University Press, Princeton, NJ
    • D. J. Watts. Small Worlds, p. Princeton University Press, Princeton, NJ, 1999.
    • (1999)
    • Watts, D.J.1
  • 91
    • 0037023854 scopus 로고    scopus 로고
    • Functional proteomics: current achievements
    • M. Yanagida. Functional proteomics: current achievements. J. Chromatogr. B, 771: 89-106, 2002.
    • (2002) J. Chromatogr. B , vol.771 , pp. 89-106
    • Yanagida, M.1
  • 92
    • 0032768938 scopus 로고    scopus 로고
    • Yeast three-hybrid system to detect and analyze interactions between RNA and protein
    • B. Zhang, B. Kraemer, S. SenGupta, S. Fields, and M.Wickens. Yeast three-hybrid system to detect and analyze interactions between RNA and protein. Methods Enzymol., 306: 93-113, 1999.
    • (1999) Methods Enzymol. , vol.306 , pp. 93-113
    • Zhang, B.1    Kraemer, B.2    SenGupta, S.3    Fields, S.4    Wickens, M.5
  • 93
    • 37649029805 scopus 로고    scopus 로고
    • Distance, dissimilarity index, and network community structure
    • H. Zhou. Distance, dissimilarity index, and network community structure. Phys. Rev., E67:061901, 2003.
    • (2003) Phys. Rev. , vol.67 E , pp. 061901
    • Zhou, H.1
  • 94
    • 0042777233 scopus 로고    scopus 로고
    • Network landscape from a Brownian particle's perspective
    • H. Zhou. Network landscape from a Brownian particle's perspective. Phys. Rev., E67:041908, 2003.
    • (2003) Phys. Rev. , vol.67 E , pp. 041908
    • Zhou, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.