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Volumn 117, Issue 46, 2013, Pages 14238-14246

Reaction mechanism of monoamine oxidase from QM/MM calculations

Author keywords

[No Author keywords available]

Indexed keywords

ENZYMATIC DECOMPOSITION; EXPERIMENTAL VALUES; MONOAMINE OXIDASE; NUCLEOPHILIC MECHANISMS; QM/MM CALCULATIONS; RADICAL MECHANISM; RATE-LIMITING STEPS; REACTION MECHANISM;

EID: 84888580112     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp4061522     Document Type: Article
Times cited : (65)

References (74)
  • 2
    • 0018596756 scopus 로고
    • Monoamine Oxidase Inhibitors. A Review of Antidepressant Effectiveness
    • Quitkin, F.; Rifkin, A.; Klein, D. F. Monoamine Oxidase Inhibitors. A Review of Antidepressant Effectiveness Arch. Gen. Psychiat. 1979, 36, 749-760
    • (1979) Arch. Gen. Psychiat. , vol.36 , pp. 749-760
    • Quitkin, F.1    Rifkin, A.2    Klein, D.F.3
  • 3
    • 0344443765 scopus 로고    scopus 로고
    • Oxidative α -Ketoglutarate Dehydrogenase Inhibition Via Subtle Elevations in Monoamine Oxidase B Levels Results in Loss of Spare Respiratory Capacity: Implications for Parkinson's Disease
    • Kumar, M. J.; Nicholls, D. G.; Andersen, J. K. Oxidative α -Ketoglutarate Dehydrogenase Inhibition Via Subtle Elevations In Monoamine Oxidase B Levels Results In Loss Of Spare Respiratory Capacity: Implications For Parkinson's Disease J. Biol. Chem. 2003, 278, 46432-9
    • (2003) J. Biol. Chem. , vol.278 , pp. 46432-46439
    • Kumar, M.J.1    Nicholls, D.G.2    Andersen, J.K.3
  • 4
    • 34547698945 scopus 로고    scopus 로고
    • Structural Insights into the Mechanism of Amine Oxidation by Monoamine Oxidases A and B
    • Edmondson, D. E.; Binda, C.; Mattevi, A. Structural Insights Into The Mechanism Of Amine Oxidation By Monoamine Oxidases A And B Arch. Biochem. Biophys. 2007, 464, 269-76
    • (2007) Arch. Biochem. Biophys. , vol.464 , pp. 269-276
    • Edmondson, D.E.1    Binda, C.2    Mattevi, A.3
  • 5
    • 33645947962 scopus 로고    scopus 로고
    • Functional Role of the "aromatic Cage" in Human Monoamine Oxidase B: Structures and Catalytic Properties of Tyr435 Mutant Proteins
    • Li, M.; Binda, C.; Mattevi, A.; Edmondson, D. E. Functional Role Of The "Aromatic Cage" In Human Monoamine Oxidase B: Structures And Catalytic Properties Of Tyr435 Mutant Proteins Biochemistry 2006, 45, 4775-84
    • (2006) Biochemistry , vol.45 , pp. 4775-4784
    • Li, M.1    Binda, C.2    Mattevi, A.3    Edmondson, D.E.4
  • 6
    • 0038700287 scopus 로고
    • The Absolute Optical Specificity of Monoamine Oxidase
    • Belleau, B.; Fang, M.; Burba, J.; Moran, J. The Absolute Optical Specificity Of Monoamine Oxidase J. Am. Chem. Soc. 1960, 82, 5752-5754
    • (1960) J. Am. Chem. Soc. , vol.82 , pp. 5752-5754
    • Belleau, B.1    Fang, M.2    Burba, J.3    Moran, J.4
  • 7
    • 0022445726 scopus 로고
    • Stereospecific Deuterium Substitution at the α -Carbon Position of Dopamine and Its Effect on Oxidative Deamination Catalyzed by MAO-A and MAO-B from Different Tissues
    • Yu, P. H.; Bailey, B. A.; Durden, D. A.; Boulton, A. A. Stereospecific Deuterium Substitution At The α -Carbon Position Of Dopamine And Its Effect On Oxidative Deamination Catalyzed By MAO-A And MAO-B From Different Tissues Biochem. Pharmacol. 1986, 35, 1027-1036
    • (1986) Biochem. Pharmacol. , vol.35 , pp. 1027-1036
    • Yu, P.H.1    Bailey, B.A.2    Durden, D.A.3    Boulton, A.A.4
  • 8
    • 0033550070 scopus 로고    scopus 로고
    • Structure-Activity Relationships in the Oxidation of Para-Substituted Benzylamine Analogues by Recombinant Human Liver Monoamine Oxidase A
    • Miller, J. R.; Edmondson, D. E. Structure-Activity Relationships In The Oxidation Of Para-Substituted Benzylamine Analogues By Recombinant Human Liver Monoamine Oxidase A Biochemistry 1999, 38, 13670-83
    • (1999) Biochemistry , vol.38 , pp. 13670-13683
    • Miller, J.R.1    Edmondson, D.E.2
  • 9
    • 32544432876 scopus 로고    scopus 로고
    • A Computational Study on the Amine-Oxidation Mechanism of Monoamine Oxidase: Insight into the Polar Nucleophilic Mechanism
    • Erdem, S. S.; Karahan, O.; Yildiz, I.; Yelekçi, K. A Computational Study On The Amine-Oxidation Mechanism Of Monoamine Oxidase: Insight Into The Polar Nucleophilic Mechanism Org. Biomol. Chem. 2006, 4, 646-58
    • (2006) Org. Biomol. Chem. , vol.4 , pp. 646-658
    • Erdem, S.S.1    Karahan, O.2    Yildiz, I.3    Yelekçi, K.4
  • 10
    • 80051596304 scopus 로고    scopus 로고
    • 2)Benzylamine: Nitrogen Rehybridization and CH Bond Cleavage Are Not Concerted
    • 2)Benzylamine: Nitrogen Rehybridization And CH Bond Cleavage Are Not Concerted J. Am. Chem. Soc. 2011, 133, 12319-21
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 12319-12321
    • Macmillar, S.1    Edmondson, D.E.2    Matsson, O.3
  • 11
    • 0001319451 scopus 로고
    • Radical Ideas about Monoamine Oxidase
    • Silverman, R. B. Radical Ideas about Monoamine Oxidase Acc. Chem. Res. 1995, 28, 335-342
    • (1995) Acc. Chem. Res. , vol.28 , pp. 335-342
    • Silverman, R.B.1
  • 12
    • 0346943567 scopus 로고    scopus 로고
    • In; Chapman, S. Perham, R. Scrutton, N. Rudolf Weber Agency for Scientific Publications: Berlin
    • Lu, X.; Ji, H.; Silverman, R. B. In Flavins and Flavoproteins; Chapman, S.; Perham, R.; Scrutton, N., Eds.; Rudolf Weber Agency for Scientific Publications: Berlin, 2002; pp 817-830.
    • (2002) Flavins and Flavoproteins , pp. 817-830
    • Lu, X.1    Ji, H.2    Silverman, R.B.3
  • 13
    • 84878728510 scopus 로고    scopus 로고
    • Computational Modeling of the Direct Hydride Transfer Mechanism for the MAO Catalyzed Oxidation of Phenethylamine and Benzylamine: ONIOM (QM/QM) Calculations
    • Akyüz, M. A.; Erdem, S. S. Computational Modeling Of The Direct Hydride Transfer Mechanism For The MAO Catalyzed Oxidation Of Phenethylamine And Benzylamine: ONIOM (QM/QM) Calculations J. Neural Transm. 2013, 120, 937-945
    • (2013) J. Neural Transm. , vol.120 , pp. 937-945
    • Akyüz, M.A.1    Erdem, S.S.2
  • 14
    • 0034722962 scopus 로고    scopus 로고
    • Nitrogen Isotope Effects As Probes of the Mechanism of D-Amino Acid Oxidase
    • Kurtz, K. A.; Rishavy, M. A.; Cleland, W. W.; Fitzpatrick, P. F. Nitrogen Isotope Effects As Probes of the Mechanism of D-Amino Acid Oxidase J. Am. Chem. Soc. 2000, 122, 12896-12897
    • (2000) J. Am. Chem. Soc. , vol.122 , pp. 12896-12897
    • Kurtz, K.A.1    Rishavy, M.A.2    Cleland, W.W.3    Fitzpatrick, P.F.4
  • 15
    • 72049099611 scopus 로고    scopus 로고
    • Oxidation of Amines by Flavoproteins
    • Fitzpatrick, P. F. Oxidation of Amines by Flavoproteins Arch. Biochem. Biophys. 2010, 493, 13-25
    • (2010) Arch. Biochem. Biophys. , vol.493 , pp. 13-25
    • Fitzpatrick, P.F.1
  • 16
    • 84870616612 scopus 로고    scopus 로고
    • How are Biogenic Amines Metabolized by Monoamine Oxidases?
    • Vianello, R.; Repič, M.; Mavri, J. How are Biogenic Amines Metabolized by Monoamine Oxidases? Eur. J. Org. Chem. 2012, 2012, 7057-7065
    • (2012) Eur. J. Org. Chem. , vol.2012 , pp. 7057-7065
    • Vianello, R.1    Repič, M.2    Mavri, J.3
  • 18
    • 80051667006 scopus 로고    scopus 로고
    • Computational Investigation on the Structure-Activity Relationship of the Biradical Mechanism for Monoamine Oxidase
    • Erdem, S. S.; Büyükmenekse, B. Computational Investigation On The Structure-Activity Relationship Of The Biradical Mechanism For Monoamine Oxidase J. Neural Transm. 2011, 118, 1021-9
    • (2011) J. Neural Transm. , vol.118 , pp. 1021-1029
    • Erdem, S.S.1    Büyükmenekse, B.2
  • 19
    • 24644437716 scopus 로고    scopus 로고
    • Three-Dimensional Structure of Human Monoamine Oxidase A (MAO A): Relation to the Structures of Rat MAO A and Human MAO B
    • De Colibus, L.; Li, M.; Binda, C.; Lustig, A.; Edmondson, D. E.; Mattevi, A. Three-Dimensional Structure Of Human Monoamine Oxidase A (MAO A): Relation To The Structures Of Rat MAO A and Human MAO B Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 12684-9
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 12684-12689
    • De Colibus, L.1    Li, M.2    Binda, C.3    Lustig, A.4    Edmondson, D.E.5    Mattevi, A.6
  • 20
    • 0036140732 scopus 로고    scopus 로고
    • Structure of Human Monoamine Oxidase B, A Drug Target for the Treatment of Neurological Disorders
    • Binda, C.; Newton-Vinson, P.; Hubálek, F.; Edmondson, D. E.; Mattevi, A. Structure Of Human Monoamine Oxidase B, A Drug Target For The Treatment Of Neurological Disorders Nat. Struct. Biol. 2002, 9, 22-6
    • (2002) Nat. Struct. Biol. , vol.9 , pp. 22-26
    • Binda, C.1    Newton-Vinson, P.2    Hubálek, F.3    Edmondson, D.E.4    Mattevi, A.5
  • 21
    • 0042693016 scopus 로고    scopus 로고
    • Insights into the Mode of Inhibition of Human Mitochondrial Monoamine Oxidase B from High-Resolution Crystal Structures
    • Binda, C.; Li, M.; Hubalek, F.; Restelli, N.; Edmondson, D. E.; Mattevi, A. Insights Into The Mode Of Inhibition Of Human Mitochondrial Monoamine Oxidase B From High-Resolution Crystal Structures Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9750-5
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 9750-9755
    • Binda, C.1    Li, M.2    Hubalek, F.3    Restelli, N.4    Edmondson, D.E.5    Mattevi, A.6
  • 22
    • 0014930530 scopus 로고
    • Model Reactions and A General Mechanism for Flavoenzyme-Catalyzed Dehydrogenations
    • Hamilton, G. A.; Brown, L. E. Model Reactions And A General Mechanism For Flavoenzyme-Catalyzed Dehydrogenations J. Am. Chem. Soc. 1970, 92, 7225-7227
    • (1970) J. Am. Chem. Soc. , vol.92 , pp. 7225-7227
    • Hamilton, G.A.1    Brown, L.E.2
  • 23
    • 0001532593 scopus 로고
    • Mechanistic Analysis of the 3-Methyllumiflavin-Promoted Oxidative Deamination of Benzylamine. A Potential Model for Monoamine Oxidase Catalysis
    • Kim, J. M.; Bogdan, M. A.; Mariano, P. S. Mechanistic Analysis Of The 3-Methyllumiflavin-Promoted Oxidative Deamination Of Benzylamine. A Potential Model For Monoamine Oxidase Catalysis J. Am. Chem. Soc. 1993, 115, 10591-10595
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 10591-10595
    • Kim, J.M.1    Bogdan, M.A.2    Mariano, P.S.3
  • 24
    • 0033773601 scopus 로고    scopus 로고
    • The Aromatic Cage in the Active Site of Monoamine Oxidase B: Effect on the Structural and Electronic Properties of Bound Benzylamine and p -Nitrobenzylamine
    • Newton-Vinson, P.; Hubalek, F.; Edmondson, D. E. The Aromatic Cage In The Active Site Of Monoamine Oxidase B: Effect On The Structural And Electronic Properties Of Bound Benzylamine And p -Nitrobenzylamine Protein Express. Purif. 2000, 20, 334-45
    • (2000) Protein Express. Purif. , vol.20 , pp. 334-345
    • Newton-Vinson, P.1    Hubalek, F.2    Edmondson, D.E.3
  • 25
    • 34250862303 scopus 로고    scopus 로고
    • The Aromatic Cage in the Active Site of Monoamine Oxidase B: Effect on the Structural and Electronic Properties of Bound Benzylamine and p-Nitrobenzylamine
    • Akyüz, M. A.; Erdem, S. S.; Edmondson, D. E. The Aromatic Cage In The Active Site Of Monoamine Oxidase B: Effect On The Structural And Electronic Properties Of Bound Benzylamine And p-Nitrobenzylamine J. Neural Transm. 2007, 114, 693-8
    • (2007) J. Neural Transm. , vol.114 , pp. 693-698
    • Akyüz, M.A.1    Erdem, S.S.2    Edmondson, D.E.3
  • 26
    • 0001360918 scopus 로고
    • In Vivo Inhibition of Liver and Brain Monoamine Oxidase by 1-Isonicotinyl-2-Isopropyl Hydrazine
    • Zeller, E.; Barsky, J. In Vivo Inhibition Of Liver And Brain Monoamine Oxidase By 1-Isonicotinyl-2-Isopropyl Hydrazine Proc. Soc. Exp. Biol. Med. 1952, 459
    • (1952) Proc. Soc. Exp. Biol. Med. , pp. 459
    • Zeller, E.1    Barsky, J.2
  • 28
    • 80155214160 scopus 로고    scopus 로고
    • Irreversible Inhibition of Monoamine Oxidase B by the Antiparkinsonian Medicines Rasagiline and Selegiline: A Computational Study
    • Borštnar, R.; Repič, M.; Kržan, M.; Mavri, J.; Vianello, R. Irreversible Inhibition of Monoamine Oxidase B by the Antiparkinsonian Medicines Rasagiline and Selegiline: A Computational Study Eur. J. Org. Chem. 2011, 2011, 6419-6433
    • (2011) Eur. J. Org. Chem. , vol.2011 , pp. 6419-6433
    • Borštnar, R.1    Repič, M.2    Kržan, M.3    Mavri, J.4    Vianello, R.5
  • 29
    • 84878698643 scopus 로고    scopus 로고
    • Quantum-Chemical Approach to Determining the High Potency of Clorgyline As An Irreversible Acetylenic Monoamine Oxidase Inhibitor
    • Pavlin, M.; Mavri, J.; Repič, M.; Vianello, R. Quantum-Chemical Approach To Determining The High Potency Of Clorgyline As An Irreversible Acetylenic Monoamine Oxidase Inhibitor J. Neural Transm. 2013, 120, 875-882
    • (2013) J. Neural Transm. , vol.120 , pp. 875-882
    • Pavlin, M.1    Mavri, J.2    Repič, M.3    Vianello, R.4
  • 30
    • 84878677014 scopus 로고    scopus 로고
    • Insights into the Binding Mode of New N-Substituted Pyrazoline Derivatives to MAO-A: Docking and Quantum Chemical Calculations
    • Erdem, S. S.; Türkkan, S.; Yelekçi, K.; Gökhan- Kelekçi, N. Insights Into The Binding Mode Of New N-Substituted Pyrazoline Derivatives To MAO-A: Docking And Quantum Chemical Calculations J. Neural Transm. 2013, 120, 859-862
    • (2013) J. Neural Transm. , vol.120 , pp. 859-862
    • Erdem, S.S.1    Türkkan, S.2    Yelekçi, K.3    Gökhan-Kelekçi, N.4
  • 31
    • 84878714279 scopus 로고    scopus 로고
    • Quantum Chemical Modeling of the Inhibition Mechanism of Monoamine Oxidase by Oxazolidinone and Analogous Heterocyclic Compounds
    • 10.3109/14756366.2012.753882
    • Erdem, S. S.; Özpnar, G. A.; Boz, U. Quantum Chemical Modeling Of The Inhibition Mechanism Of Monoamine Oxidase By Oxazolidinone And Analogous Heterocyclic Compounds J. Enzyme Inhib. Med. Chem. 2013, 10.3109/14756366.2012. 753882
    • (2013) J. Enzyme Inhib. Med. Chem.
    • Erdem, S.S.1    Özpnar, G.A.2    Boz, U.3
  • 32
    • 0033614004 scopus 로고    scopus 로고
    • Asparagine and Glutamine: Using Hydrogen Atom Contacts in the Choice of Side-Chain Amide Orientation
    • Word, J. M.; Lovell, S. C.; Richardson, J. S.; Richardson, D. C. Asparagine And Glutamine: Using Hydrogen Atom Contacts In The Choice Of Side-Chain Amide Orientation J. Mol. Biol. 1999, 285, 1735-47
    • (1999) J. Mol. Biol. , vol.285 , pp. 1735-1747
    • Word, J.M.1    Lovell, S.C.2    Richardson, J.S.3    Richardson, D.C.4
  • 35
    • 3142714765 scopus 로고    scopus 로고
    • Extending the Treatment of Backbone Energetics in Protein Force Fields: Limitations of Gas-Phase Quantum Mechanics in Reproducing Protein Conformational Distributions in Molecular Dynamics Simulations
    • Mackerell, A. D.; Feig, M.; Brooks, C. L. Extending The Treatment Of Backbone Energetics In Protein Force Fields: Limitations Of Gas-Phase Quantum Mechanics In Reproducing Protein Conformational Distributions In Molecular Dynamics Simulations J. Comput. Chem. 2004, 25, 1400-15
    • (2004) J. Comput. Chem. , vol.25 , pp. 1400-1415
    • Mackerell, A.D.1    Feig, M.2    Brooks, C.L.3
  • 37
    • 0037116518 scopus 로고    scopus 로고
    • Polyunsaturated Fatty Acids in Lipid Bilayers: Intrinsic and Environmental Contributions to Their Unique Physical Properties
    • Feller, S. E.; Gawrisch, K.; MacKerell, A. D., Jr. Polyunsaturated Fatty Acids In Lipid Bilayers: Intrinsic And Environmental Contributions To Their Unique Physical Properties J. Am. Chem. Soc. 2002, 124, 318-26
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 318-326
    • Feller, S.E.1    Gawrisch, K.2    Mackerell Jr., A.D.3
  • 38
    • 0034250744 scopus 로고    scopus 로고
    • An Improved Empirical Potential Energy Function for Molecular Simulations of Phospholipids
    • Feller, S. E.; MacKerell, A. D., Jr. An Improved Empirical Potential Energy Function for Molecular Simulations of Phospholipids J. Phys. Chem. B 2000, 104, 7510-7515
    • (2000) J. Phys. Chem. B , vol.104 , pp. 7510-7515
    • Feller, S.E.1    Mackerell Jr., A.D.2
  • 40
    • 0348244547 scopus 로고    scopus 로고
    • All-Atom Empirical Force Field for Nucleic Acids: I. Parameter Optimization Based on Small Molecule and Condensed Phase Macromolecular Target Data
    • Foloppe, N.; MacKerell, A. D., Jr. All-Atom Empirical Force Field For Nucleic Acids: I. Parameter Optimization Based On Small Molecule And Condensed Phase Macromolecular Target Data J. Comput. Chem. 2000, 21, 86-104
    • (2000) J. Comput. Chem. , vol.21 , pp. 86-104
    • Foloppe, N.1    Mackerell Jr., A.D.2
  • 41
    • 0000214231 scopus 로고    scopus 로고
    • All-Atom Empirical Force Field for Nucleic Acids: II. Application to Molecular Dynamics Simulations of DNA and RNA in Solution
    • MacKerell, A. D.; Banavali, N. K. All-Atom Empirical Force Field For Nucleic Acids: II. Application To Molecular Dynamics Simulations Of DNA And RNA In Solution J. Comput. Chem. 2000, 21, 105-120
    • (2000) J. Comput. Chem. , vol.21 , pp. 105-120
    • Mackerell, A.D.1    Banavali, N.K.2
  • 43
    • 70350660770 scopus 로고    scopus 로고
    • Finite-temperature effects in enzymatic reactions - Insights from QM/MM free-energy simulations
    • Senn, H. M.; Kästner, J.; Breidung, J.; Thiel, W. Finite-temperature effects in enzymatic reactions-Insights from QM/MM free-energy simulations Can. J. Chem. 2009, 87, 1322-1337
    • (2009) Can. J. Chem. , vol.87 , pp. 1322-1337
    • Senn, H.M.1    Kästner, J.2    Breidung, J.3    Thiel, W.4
  • 44
    • 84888622544 scopus 로고    scopus 로고
    • ChemShell, a Computational Chemistry Shell; see www.chemshell.org.
  • 47
    • 0001563650 scopus 로고
    • Ab Initio Multicenter Tight-Binding Model for Molecular-Dynamics Simulations and Other Applications in Covalent Systems
    • Sankey, O.; Niklewski, D. Ab Initio Multicenter Tight-Binding Model For Molecular-Dynamics Simulations And Other Applications In Covalent Systems Phys. Rev. B 1989, 40, 3979-3995
    • (1989) Phys. Rev. B , vol.40 , pp. 3979-3995
    • Sankey, O.1    Niklewski, D.2
  • 48
    • 0001107465 scopus 로고
    • Electronic Structure Approach for Complex Silicas
    • Demkov, A.; Ortega, J.; Sankey, O.; Grumbach, M. Electronic Structure Approach For Complex Silicas Phys. Rev. B 1995, 52, 1618-1630
    • (1995) Phys. Rev. B , vol.52 , pp. 1618-1630
    • Demkov, A.1    Ortega, J.2    Sankey, O.3    Grumbach, M.4
  • 49
    • 0035891422 scopus 로고    scopus 로고
    • Further Developments in the Local-Orbital Density-Functional-Theory Tight-Binding Method
    • Lewis, J.; Glaesemann, K.; Voth, G.; Fritsch, J.; Demkov, A.; Ortega, J.; Sankey, O. Further Developments In The Local-Orbital Density-Functional-Theory Tight-Binding Method Phys. Rev. B 2001, 64, 195103
    • (2001) Phys. Rev. B , vol.64 , pp. 195103
    • Lewis, J.1    Glaesemann, K.2    Voth, G.3    Fritsch, J.4    Demkov, A.5    Ortega, J.6    Sankey, O.7
  • 50
    • 28344440838 scopus 로고    scopus 로고
    • Multicenter Approach to the Exchange-Correlation Interactions in Ab Initio Tight-Binding Methods
    • Jelínek, P.; Wang, H.; Lewis, J.; Sankey, O.; Ortega, J. Multicenter Approach To The Exchange-Correlation Interactions In Ab Initio Tight-Binding Methods Phys. Rev. B 2005, 71, 235101
    • (2005) Phys. Rev. B , vol.71 , pp. 235101
    • Jelínek, P.1    Wang, H.2    Lewis, J.3    Sankey, O.4    Ortega, J.5
  • 52
    • 34248396316 scopus 로고    scopus 로고
    • Optimized Atomic-Like Orbitals for First-Principles Tight-Binding Molecular Dynamics
    • Basanta, M. A.; Dappe, Y. J.; Jelínek, P.; Ortega, J. Optimized Atomic-Like Orbitals For First-Principles Tight-Binding Molecular Dynamics Comput. Mater. Sci. 2007, 39, 759-766
    • (2007) Comput. Mater. Sci. , vol.39 , pp. 759-766
    • Basanta, M.A.1    Dappe, Y.J.2    Jelínek, P.3    Ortega, J.4
  • 53
    • 4243553426 scopus 로고
    • Density-Functional Exchange-Energy Approximation with Correct Asymptotic Behavior
    • Becke, A. D. Density-Functional Exchange-Energy Approximation With Correct Asymptotic Behavior Phys. Rev. A 1988, 38, 3098-3100
    • (1988) Phys. Rev. A , vol.38 , pp. 3098-3100
    • Becke, A.D.1
  • 54
    • 0345491105 scopus 로고
    • Development of the Colle-Salvetti Correlation-Energy Formula into A Functional of the Electron Density
    • Lee, C.; Yang, W.; Parr, R. G. Development Of The Colle-Salvetti Correlation-Energy Formula Into A Functional Of The Electron Density Phys. Rev. B 1988, 37, 785-789
    • (1988) Phys. Rev. B , vol.37 , pp. 785-789
    • Lee, C.1    Yang, W.2    Parr, R.G.3
  • 55
    • 5944261746 scopus 로고
    • Density-Functional Approximation for the Correlation Energy of the Inhomogeneous Electron Gas
    • Perdew, J. Density-Functional Approximation For The Correlation Energy Of The Inhomogeneous Electron Gas Phys. Rev. B 1986, 33, 8822-8824
    • (1986) Phys. Rev. B , vol.33 , pp. 8822-8824
    • Perdew, J.1
  • 56
    • 84888582499 scopus 로고    scopus 로고
    • TURBOMOLE v 6.0.3 2009, a development of University of Karlsruhe and Forschungszentrum Karlsruhe GmbH, 1989-2007, TURBOMOLE GmbH, since; available from.
    • TURBOMOLE v 6.0.3 2009, a development of University of Karlsruhe and Forschungszentrum Karlsruhe GmbH, 1989-2007, TURBOMOLE GmbH, since 2007; available from http://www.turbomole.com.
    • (2007)
  • 57
    • 26344435738 scopus 로고
    • Fully Optimized Contracted Gaussian Basis Sets for Atoms Li to Kr
    • Schäfer, A.; Horn, H.; Ahlrichs, R. Fully Optimized Contracted Gaussian Basis Sets For Atoms Li to Kr J. Chem. Phys. 1992, 97, 2571
    • (1992) J. Chem. Phys. , vol.97 , pp. 2571
    • Schäfer, A.1    Horn, H.2    Ahlrichs, R.3
  • 58
    • 79959893692 scopus 로고    scopus 로고
    • The Fragmentation-Recombination Mechanism of the Enzyme Glutamate Mutase Studied by QM/MM Simulations
    • Rommel, J. B.; Kästner, J. The Fragmentation-Recombination Mechanism Of The Enzyme Glutamate Mutase Studied By QM/MM Simulations J. Am. Chem. Soc. 2011, 133, 10195-203
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 10195-10203
    • Rommel, J.B.1    Kästner, J.2
  • 59
    • 33845328066 scopus 로고    scopus 로고
    • A New Local Density Functional for Main-Group Thermochemistry, Transition Metal Bonding, Thermochemical Kinetics, and Noncovalent Interactions
    • Zhao, Y.; Truhlar, D. G. A New Local Density Functional For Main-Group Thermochemistry, Transition Metal Bonding, Thermochemical Kinetics, And Noncovalent Interactions J. Chem. Phys. 2006, 125, 194101
    • (2006) J. Chem. Phys. , vol.125 , pp. 194101
    • Zhao, Y.1    Truhlar, D.G.2
  • 61
    • 33746614482 scopus 로고
    • Gaussian Basis Sets for Use in Correlated Molecular Calculations. I. The Atoms Boron Through Neon and Hydrogen
    • Dunning, T. H. Gaussian Basis Sets For Use In Correlated Molecular Calculations. I. The Atoms Boron Through Neon And Hydrogen J. Chem. Phys. 1989, 90, 1007
    • (1989) J. Chem. Phys. , vol.90 , pp. 1007
    • Dunning, T.H.1
  • 62
    • 0001603545 scopus 로고    scopus 로고
    • DL-POLY: Application to Molecular Simulation
    • Smith, W.; Yong, C.; Rodger, P. DL-POLY: Application To Molecular Simulation Mol. Simul. 2002, 28, 385-471
    • (2002) Mol. Simul. , vol.28 , pp. 385-471
    • Smith, W.1    Yong, C.2    Rodger, P.3
  • 63
    • 0000327364 scopus 로고    scopus 로고
    • A Dimer Method for Finding Saddle Points on High Dimensional Potential Surfaces Using only First Derivatives
    • Henkelman, G.; Jonsson, H. A Dimer Method For Finding Saddle Points On High Dimensional Potential Surfaces Using Only First Derivatives J. Chem. Phys. 1999, 111, 7010
    • (1999) J. Chem. Phys. , vol.111 , pp. 7010
    • Henkelman, G.1    Jonsson, H.2
  • 64
    • 38049108089 scopus 로고    scopus 로고
    • Superlinearly Converging Dimer Method for Transition State Search
    • Kästner, J.; Sherwood, P. Superlinearly Converging Dimer Method For Transition State Search J. Chem. Phys. 2008, 128, 014106
    • (2008) J. Chem. Phys. , vol.128 , pp. 014106
    • Kästner, J.1    Sherwood, P.2
  • 66
    • 75649105042 scopus 로고    scopus 로고
    • Compound i Reactivity Defines Alkene Oxidation Selectivity in Cytochrome P450cam
    • Lonsdale, R.; Harvey, J. N.; Mulholland, A. J. Compound I Reactivity Defines Alkene Oxidation Selectivity in Cytochrome P450cam J. Phys. Chem. B 2010, 114, 1156-1162
    • (2010) J. Phys. Chem. B , vol.114 , pp. 1156-1162
    • Lonsdale, R.1    Harvey, J.N.2    Mulholland, A.J.3
  • 67
    • 77951110766 scopus 로고    scopus 로고
    • The Ribosome Catalyses Peptide Bond Formation by Providing High Ionic Strength
    • Kästner, J.; Sherwood, P. The Ribosome Catalyses Peptide Bond Formation By Providing High Ionic Strength Mol. Phys. 2010, 108, 293
    • (2010) Mol. Phys. , vol.108 , pp. 293
    • Kästner, J.1    Sherwood, P.2
  • 68
    • 0001053428 scopus 로고
    • Quantum-Classical Crossover of the Transition Rate in the Damped Double Well
    • Gillan, M. J. Quantum-Classical Crossover Of The Transition Rate In The Damped Double Well J. Phys. C 1987, 20, 3621
    • (1987) J. Phys. C , vol.20 , pp. 3621
    • Gillan, M.J.1
  • 69
    • 36149014576 scopus 로고
    • The Penetration of a Potential Barrier by Electrons
    • Eckart, C. The Penetration of a Potential Barrier by Electrons Phys. Rev. 1930, 35, 1303
    • (1930) Phys. Rev. , vol.35 , pp. 1303
    • Eckart, C.1
  • 70
    • 34250811635 scopus 로고    scopus 로고
    • Variations in Activity and Inhibition with pH: The Protonated Amine Is the Substrate for Monoamine Oxidase, but Uncharged Inhibitors Bind Better
    • Jones, T. Z. E.; Balsa, D.; Unzeta, M.; Ramsay, R. R. Variations In Activity And Inhibition With pH: The Protonated Amine Is The Substrate For Monoamine Oxidase, But Uncharged Inhibitors Bind Better J. Neural Transm. 2007, 114, 707-12
    • (2007) J. Neural Transm. , vol.114 , pp. 707-712
    • Jones, T.Z.E.1    Balsa, D.2    Unzeta, M.3    Ramsay, R.R.4
  • 71
    • 47249152398 scopus 로고    scopus 로고
    • The pH Dependence of Kinetic Isotope Effects in Monoamine Oxidase A Indicates Stabilization of the Neutral Amine in the Enzyme-Substrate Complex
    • Dunn, R. V.; Marshall, K. R.; Munro, A. W.; Scrutton, N. S. The pH Dependence Of Kinetic Isotope Effects In Monoamine Oxidase A Indicates Stabilization Of The Neutral Amine In The Enzyme-Substrate Complex FEBS J. 2008, 275, 3850-8
    • (2008) FEBS J. , vol.275 , pp. 3850-3858
    • Dunn, R.V.1    Marshall, K.R.2    Munro, A.W.3    Scrutton, N.S.4
  • 74
    • 33750559983 scopus 로고    scopus 로고
    • Semiempirical GGA-Type Density Functional Constructed with A Long-Range Dispersion Contribution
    • Grimme, S. Semiempirical GGA-Type Density Functional Constructed With A Long-Range Dispersion Contribution J. Comput. Chem. 2006, 27, 1787-1799
    • (2006) J. Comput. Chem. , vol.27 , pp. 1787-1799
    • Grimme, S.1


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