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Volumn 13, Issue 1, 2012, Pages

A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content

Author keywords

Centromere; Genome; Isochore; Linkage; Meiosis; Pig; Recombination; SNP; Telomere

Indexed keywords

ARTICLE; AUTOSOME; CENTROMERE; CHROMOSOMAL LOCALIZATION; CHROMOSOME POSITIONING; CHROMOSOME SIZE; DNA BASE COMPOSITION; EXPERIMENTAL PIG; FEMALE; GC RICH SEQUENCE; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC LINKAGE; GENETIC MARKER; GENETIC RECOMBINATION; GENOME ANALYSIS; GENOTYPE; ISOCHORE; MALE; MEIOSIS; MOLECULAR EVOLUTION; NONHUMAN; PEDIGREE; QUANTITATIVE TRAIT LOCUS MAPPING; SEX DIFFERENCE; SINGLE NUCLEOTIDE POLYMORPHISM; TELOMERE;

EID: 84868704770     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-13-586     Document Type: Article
Times cited : (129)

References (45)
  • 1
    • 0033711876 scopus 로고    scopus 로고
    • Bias in multipoint linkage analysis arising from map misspecification
    • 10.1002/1098-2272(200012)19:4<366::AID-GEPI8>3.0.CO;2-F, 11108646
    • Daw EW, Thompson EA, Wijsman EM. Bias in multipoint linkage analysis arising from map misspecification. Genet Epidemiol 2000, 19:366-380. 10.1002/1098-2272(200012)19:4<366::AID-GEPI8>3.0.CO;2-F, 11108646.
    • (2000) Genet Epidemiol , vol.19 , pp. 366-380
    • Daw, E.W.1    Thompson, E.A.2    Wijsman, E.M.3
  • 2
    • 33745590163 scopus 로고    scopus 로고
    • Using sex-averaged genetic maps in multipoint linkage analysis when identity-by-descent status is incompletely known
    • 10.1002/gepi.20151, 16685713
    • Fingerlin TE, Abecasis GR, Boehnke M. Using sex-averaged genetic maps in multipoint linkage analysis when identity-by-descent status is incompletely known. Genet Epidemiol 2006, 30:384-396. 10.1002/gepi.20151, 16685713.
    • (2006) Genet Epidemiol , vol.30 , pp. 384-396
    • Fingerlin, T.E.1    Abecasis, G.R.2    Boehnke, M.3
  • 3
    • 50449088155 scopus 로고    scopus 로고
    • A common sequence motif associated with recombination hot spots and genome instability in humans
    • 10.1038/ng.213, 19165926
    • Myers S, Freeman C, Auton A, Donnelly P, McVean G. A common sequence motif associated with recombination hot spots and genome instability in humans. Nat Genet 2008, 40:1124-1129. 10.1038/ng.213, 19165926.
    • (2008) Nat Genet , vol.40 , pp. 1124-1129
    • Myers, S.1    Freeman, C.2    Auton, A.3    Donnelly, P.4    McVean, G.5
  • 4
    • 76749170346 scopus 로고    scopus 로고
    • PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice
    • 10.1126/science.1183439, 20044539
    • Baudat F, Buard J, Grey C, Fledel-Alon A, Ober C, Przeworski M, Coop G, de Massy B. PRDM9 is a major determinant of meiotic recombination hotspots in humans and mice. Science 2010, 327:836-840. 10.1126/science.1183439, 20044539.
    • (2010) Science , vol.327 , pp. 836-840
    • Baudat, F.1    Buard, J.2    Grey, C.3    Fledel-Alon, A.4    Ober, C.5    Przeworski, M.6    Coop, G.7    de Massy, B.8
  • 5
    • 77957579303 scopus 로고    scopus 로고
    • PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in Humans
    • 10.1038/ng.658, 3092422, 20818382
    • Berg IL, Neumann R, Lam KW, Sarbajna S, Odenthal-Hesse L, May CA, Jeffreys AJ. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in Humans. Nat Genet 2010, 42:859-863. 10.1038/ng.658, 3092422, 20818382.
    • (2010) Nat Genet , vol.42 , pp. 859-863
    • Berg, I.L.1    Neumann, R.2    Lam, K.W.3    Sarbajna, S.4    Odenthal-Hesse, L.5    May, C.A.6    Jeffreys, A.J.7
  • 6
    • 77249144000 scopus 로고    scopus 로고
    • Mammalian recombination hot spots: properties, control and evolution
    • Paigen K, Petkov PM. Mammalian recombination hot spots: properties, control and evolution. Nat Rev Genet 2010, 11:221-233.
    • (2010) Nat Rev Genet , vol.11 , pp. 221-233
    • Paigen, K.1    Petkov, P.M.2
  • 13
    • 33845500349 scopus 로고    scopus 로고
    • A high-resolution single nucleotide polymorphism genetic map of the mouse genome
    • 10.1371/journal.pbio.0040395, 1635748, 17105354
    • Shifman S, Bell JT, Copley RR, Taylor MS, Williams RW, Mott R, Flint J. A high-resolution single nucleotide polymorphism genetic map of the mouse genome. PLoS Biol 2006, 4:e395. 10.1371/journal.pbio.0040395, 1635748, 17105354.
    • (2006) PLoS Biol , vol.4
    • Shifman, S.1    Bell, J.T.2    Copley, R.R.3    Taylor, M.S.4    Williams, R.W.5    Mott, R.6    Flint, J.7
  • 15
  • 19
    • 84870745273 scopus 로고    scopus 로고
    • High resolution map of the porcine genome using radiated-hybrid genotyping of the Illumina porcineSNP60 BeadChip: analysis and validation of the Pig genome assembly
    • in preparation
    • Servin B, Milan D, et al. High resolution map of the porcine genome using radiated-hybrid genotyping of the Illumina porcineSNP60 BeadChip: analysis and validation of the Pig genome assembly. in preparation.
    • Servin, B.1    Milan, D.2
  • 21
    • 79960142302 scopus 로고    scopus 로고
    • Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids
    • 10.1186/1471-2164-12-362, 3149590, 21752240
    • Grindflek E, Lien S, Hamland H, Hansen MH, Kent M, van Son M, Meuwissen TH. Large scale genome-wide association and LDLA mapping study identifies QTLs for boar taint and related sex steroids. BMC Genomics 2011, 12:362. 10.1186/1471-2164-12-362, 3149590, 21752240.
    • (2011) BMC Genomics , vol.12 , pp. 362
    • Grindflek, E.1    Lien, S.2    Hamland, H.3    Hansen, M.H.4    Kent, M.5    van Son, M.6    Meuwissen, T.H.7
  • 23
    • 70350170126 scopus 로고    scopus 로고
    • Variation in genomic recombination rates among heterogeneous stock mice
    • 10.1534/genetics.109.105114, 2728871, 19535547
    • Dumont BL, Broman KW, Payseur BA. Variation in genomic recombination rates among heterogeneous stock mice. Genetics 2009, 182:1345-1349. 10.1534/genetics.109.105114, 2728871, 19535547.
    • (2009) Genetics , vol.182 , pp. 1345-1349
    • Dumont, B.L.1    Broman, K.W.2    Payseur, B.A.3
  • 25
    • 33746208832 scopus 로고    scopus 로고
    • Meiotic crossing-over: obligation and interference
    • 10.1016/j.cell.2006.07.010, 16873056
    • Jones GH, Franklin FC. Meiotic crossing-over: obligation and interference. Cell 2006, 126:246-248. 10.1016/j.cell.2006.07.010, 16873056.
    • (2006) Cell , vol.126 , pp. 246-248
    • Jones, G.H.1    Franklin, F.C.2
  • 26
    • 0018850947 scopus 로고
    • Proceedings of the First International Conference for the Standardisation of Banded Karyotypes of Domestic Animals. University of Reading Reading, England 2nd-6th August 1976
    • Ford CE, Pollock DL, Gustavsson I. Proceedings of the First International Conference for the Standardisation of Banded Karyotypes of Domestic Animals. University of Reading Reading, England 2nd-6th August 1976. Hereditas 1980, 92:145-162.
    • (1980) Hereditas , vol.92 , pp. 145-162
    • Ford, C.E.1    Pollock, D.L.2    Gustavsson, I.3
  • 28
    • 37549071893 scopus 로고    scopus 로고
    • Molecular architecture of the kinetochore-microtubule interface
    • 10.1038/nrm2310, 18097444
    • Cheeseman IM, Desai A. Molecular architecture of the kinetochore-microtubule interface. Nature Reviews Molecular Cell Biology 2008, 9:33-46. 10.1038/nrm2310, 18097444.
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , pp. 33-46
    • Cheeseman, I.M.1    Desai, A.2
  • 29
    • 44949198268 scopus 로고    scopus 로고
    • The impact of recombination on nucleotide substitutions in the human genome
    • 10.1371/journal.pgen.1000071, 2346554, 18464896
    • Duret L, Arndt PF. The impact of recombination on nucleotide substitutions in the human genome. PLoS genetics 2008, 4:e1000071. 10.1371/journal.pgen.1000071, 2346554, 18464896.
    • (2008) PLoS genetics , vol.4
    • Duret, L.1    Arndt, P.F.2
  • 30
    • 0035986891 scopus 로고    scopus 로고
    • Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution
    • 10.1093/oxfordjournals.molbev.a004176, 12082137
    • Birdsell JA. Integrating genomics, bioinformatics, and classical genetics to study the effects of recombination on genome evolution. Molecular biology and evolution 2002, 19:1181-1197. 10.1093/oxfordjournals.molbev.a004176, 12082137.
    • (2002) Molecular biology and evolution , vol.19 , pp. 1181-1197
    • Birdsell, J.A.1
  • 31
    • 0038543069 scopus 로고    scopus 로고
    • Biased gene conversion: implications for genome and sex evolution
    • 10.1016/S0168-9525(03)00116-1, 12801726
    • Marais G. Biased gene conversion: implications for genome and sex evolution. Trends in Genetics 2003, 19:330-338. 10.1016/S0168-9525(03)00116-1, 12801726.
    • (2003) Trends in Genetics , vol.19 , pp. 330-338
    • Marais, G.1
  • 32
    • 0035345013 scopus 로고    scopus 로고
    • Meiotic recombination hot spots and cold spots
    • 10.1038/35072078, 11331902
    • Petes TD. Meiotic recombination hot spots and cold spots. Nature Reviews Genetics 2001, 2:360-369. 10.1038/35072078, 11331902.
    • (2001) Nature Reviews Genetics , vol.2 , pp. 360-369
    • Petes, T.D.1
  • 33
    • 0036959057 scopus 로고    scopus 로고
    • Context dependence of meiotic recombination hotspots in yeast: the relationship between recombination activity of a reporter construct and base composition
    • 1462354, 12524370
    • Petes TD, Merker JD. Context dependence of meiotic recombination hotspots in yeast: the relationship between recombination activity of a reporter construct and base composition. Genetics 2002, 162:2049-2052. 1462354, 12524370.
    • (2002) Genetics , vol.162 , pp. 2049-2052
    • Petes, T.D.1    Merker, J.D.2
  • 34
    • 0034766004 scopus 로고    scopus 로고
    • GC-content evolution in mammalian genomes: the biased gene conversion hypothesis
    • 1461818, 11693127
    • Galtier N, Piganeau G, Mouchiroud D, Duret L. GC-content evolution in mammalian genomes: the biased gene conversion hypothesis. Genetics 2001, 159:907-911. 1461818, 11693127.
    • (2001) Genetics , vol.159 , pp. 907-911
    • Galtier, N.1    Piganeau, G.2    Mouchiroud, D.3    Duret, L.4
  • 35
    • 70350236484 scopus 로고    scopus 로고
    • Biased gene conversion and the evolution of mammalian genomic landscapes
    • 10.1146/annurev-genom-082908-150001, 19630562
    • Duret L, Galtier N. Biased gene conversion and the evolution of mammalian genomic landscapes. Annu Rev Genomics Hum Genet 2009, 10:285-311. 10.1146/annurev-genom-082908-150001, 19630562.
    • (2009) Annu Rev Genomics Hum Genet , vol.10 , pp. 285-311
    • Duret, L.1    Galtier, N.2
  • 36
    • 77955379360 scopus 로고
    • Sex-ratio and unisexual sterility in hybrid animals
    • Haldane JB. Sex-ratio and unisexual sterility in hybrid animals. J Genet 1922, 12:101-109.
    • (1922) J Genet , vol.12 , pp. 101-109
    • Haldane, J.B.1
  • 39
    • 58549095934 scopus 로고    scopus 로고
    • A linkage map of the porcine genome from a large-scale White Duroc x Erhualian resource population and evaluation of factors affecting recombination rates
    • 10.1111/j.1365-2052.2008.01802.x, 19178432
    • Guo Y, Mao H, Ren J, Yan X, Duan Y, Yang G, Ren D, Zhang Z, Yang B, Ouyang J, Brenig B, Haley C, Huang L. A linkage map of the porcine genome from a large-scale White Duroc x Erhualian resource population and evaluation of factors affecting recombination rates. Animal Genetics 2009, 40:47-52. 10.1111/j.1365-2052.2008.01802.x, 19178432.
    • (2009) Animal Genetics , vol.40 , pp. 47-52
    • Guo, Y.1    Mao, H.2    Ren, J.3    Yan, X.4    Duan, Y.5    Yang, G.6    Ren, D.7    Zhang, Z.8    Yang, B.9    Ouyang, J.10    Brenig, B.11    Haley, C.12    Huang, L.13
  • 40
    • 2442651458 scopus 로고    scopus 로고
    • Recombination drives the evolution of GC-content in the human genome
    • Meunier J, Duret L. Recombination drives the evolution of GC-content in the human genome. MolBiol Evol 2004, 21:984-990.
    • (2004) MolBiol Evol , vol.21 , pp. 984-990
    • Meunier, J.1    Duret, L.2
  • 41
    • 35748971012 scopus 로고    scopus 로고
    • Crossover interference underlies sex differences in recombination rates
    • 10.1016/j.tig.2007.08.015, 17964681
    • Petkov PM, Broman KW, Szatkiewicz JP, Paigen K. Crossover interference underlies sex differences in recombination rates. Trends Genet 2007, 23:539-42. 10.1016/j.tig.2007.08.015, 17964681.
    • (2007) Trends Genet , vol.23 , pp. 539-542
    • Petkov, P.M.1    Broman, K.W.2    Szatkiewicz, J.P.3    Paigen, K.4
  • 42
    • 79959857202 scopus 로고    scopus 로고
    • Genetic analysis of genome-scale recombination rate evolution in house mice
    • 10.1371/journal.pgen.1002116, 3111479, 21695226
    • Dumont BL, Payseur BA. Genetic analysis of genome-scale recombination rate evolution in house mice. PLoS Genetics 2011, 7:e1002116. 10.1371/journal.pgen.1002116, 3111479, 21695226.
    • (2011) PLoS Genetics , vol.7
    • Dumont, B.L.1    Payseur, B.A.2
  • 44
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • 187518, 11932250
    • Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 45
    • 39449116116 scopus 로고    scopus 로고
    • High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans
    • 10.1126/science.1151851, 18239090
    • Coop G, Wen X, Ober C, Pritchard JK, Przeworski M. High-resolution mapping of crossovers reveals extensive variation in fine-scale recombination patterns among humans. Science 2008, 319:1395-1398. 10.1126/science.1151851, 18239090.
    • (2008) Science , vol.319 , pp. 1395-1398
    • Coop, G.1    Wen, X.2    Ober, C.3    Pritchard, J.K.4    Przeworski, M.5


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