-
1
-
-
55749083885
-
Great times for small molecules: C-di-AMP, a second messenger candidate in bacteria and archaea
-
Römling, U. Great times for small molecules: c-di-AMP, a second messenger candidate in bacteria and archaea. Sci. Signal. 1, pe39 (2008).
-
(2008)
Sci. Signal.
, vol.1
-
-
Römling, U.1
-
2
-
-
63749115101
-
Bacterial nucleotide-based second messengers
-
Pesavento, C. & Hengge, R. Bacterial nucleotide-based second messengers. Curr. Opin. Microbiol. 12, 170-176 (2009).
-
(2009)
Curr. Opin. Microbiol.
, vol.12
, pp. 170-176
-
-
Pesavento, C.1
Hengge, R.2
-
3
-
-
84861801044
-
You've come a long way: C-di-GMP signaling
-
Sondermann, H., Shikuma, N.J. & Yildiz, F.H. You've come a long way: c-di-GMP signaling. Curr. Opin. Microbiol. 15, 140-146 (2012).
-
(2012)
Curr. Opin. Microbiol.
, vol.15
, pp. 140-146
-
-
Sondermann, H.1
Shikuma, N.J.2
Yildiz, F.H.3
-
4
-
-
84862527194
-
Sensing the messenger: The diverse ways that bacteria signal through c-di-GMP
-
Krasteva, P.V., Giglio, K.M. & Sondermann, H. Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP. Protein Sci. 21, 929-948 (2012).
-
(2012)
Protein Sci.
, vol.21
, pp. 929-948
-
-
Krasteva, P.V.1
Giglio, K.M.2
Sondermann, H.3
-
5
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger c-di-GMP
-
Sudarsan, N. et al. Riboswitches in eubacteria sense the second messenger c-di-GMP. Science 321, 411-413 (2008).
-
(2008)
Science
, vol.321
, pp. 411-413
-
-
Sudarsan, N.1
-
6
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee, E.R., Baker, J.L., Weinberg, Z., Sudarsan, N. & Breaker, R.R. An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 329, 845-848 (2010).
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
7
-
-
43049087389
-
Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates
-
Witte, G., Hartung, S., Buttner, K. & Hopfner, K.P. Structural biochemistry of a bacterial checkpoint protein reveals diadenylate cyclase activity regulated by DNA recombination intermediates. Mol. Cell 30, 167-178 (2008).
-
(2008)
Mol. Cell
, vol.30
, pp. 167-178
-
-
Witte, G.1
Hartung, S.2
Buttner, K.3
Hopfner, K.P.4
-
8
-
-
79958009528
-
C-di-AMP reports DNA integrity during sporulation in Bacillus subtilis
-
Oppenheimer-Shaanan, Y., Wexselblatt, E., Katzhendler, J., Yavin, E. & Ben-Yehuda, S. c-di-AMP reports DNA integrity during sporulation in Bacillus subtilis. EMBO Rep. 12, 594-601 (2011).
-
(2011)
EMBO Rep.
, vol.12
, pp. 594-601
-
-
Oppenheimer-Shaanan, Y.1
Wexselblatt, E.2
Katzhendler, J.3
Yavin, E.4
Ben-Yehuda, S.5
-
9
-
-
80053436395
-
C-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress
-
Corrigan, R.M., Abbott, J.C., Burhenne, H., Kaever, V. & Gründling, A. c-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress. PLoS Pathog. 7, e1002217 (2011).
-
(2011)
PLoS Pathog.
, vol.7
-
-
Corrigan, R.M.1
Abbott, J.C.2
Burhenne, H.3
Kaever, V.4
Gründling, A.5
-
10
-
-
84868611616
-
Heat resistance and salt hypersensitivity in Lactococcus lactis due to spontaneous mutation of limg1816 (gdpP) induced by high temperature growth
-
Smith, W.M. et al. Heat resistance and salt hypersensitivity in Lactococcus lactis due to spontaneous mutation of limg1816 (gdpP) induced by high temperature growth. Appl. Environ. Microbiol. 78, 7753-7759 (2012).
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 7753-7759
-
-
Smith, W.M.1
-
11
-
-
84878454210
-
Systematic identification of conserved bacteria c-di-AMP receptor proteins
-
Corrigan, R.M. et al. Systematic identification of conserved bacteria c-di-AMP receptor proteins. Proc. Natl. Acad. Sci. USA 110, 9084-9089 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 9084-9089
-
-
Corrigan, R.M.1
-
12
-
-
84855846639
-
Widespread genetic switches and toxicity resistance proteins for fluoride
-
Baker, J.L. et al. Widespread genetic switches and toxicity resistance proteins for fluoride. Science 335, 233-235 (2012).
-
(2012)
Science
, vol.335
, pp. 233-235
-
-
Baker, J.L.1
-
13
-
-
2342511433
-
New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
-
Barrick, J.E. et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc. Natl. Acad. Sci. USA 101, 6421-6426 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6421-6426
-
-
Barrick, J.E.1
-
14
-
-
5044234799
-
A glycine-dependent riboswitch that uses cooperative binding to control gene expression
-
Mandal, M. et al. A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306, 275-279 (2004).
-
(2004)
Science
, vol.306
, pp. 275-279
-
-
Mandal, M.1
-
15
-
-
1642586299
-
Control of gene expression by a natural metabolite-responsive ribozyme
-
Winkler, W.C., Nahvi, A., Roth, A., Collins, J.A. & Breaker, R.R. Control of gene expression by a natural metabolite-responsive ribozyme. Nature 428, 281-286 (2004).
-
(2004)
Nature
, vol.428
, pp. 281-286
-
-
Winkler, W.C.1
Nahvi, A.2
Roth, A.3
Collins, J.A.4
Breaker, R.R.5
-
16
-
-
34247181095
-
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain
-
Roth, A. et al. A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nat. Struct. Mol. Biol. 14, 308-317 (2007).
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 308-317
-
-
Roth, A.1
-
17
-
-
34548253368
-
Structure and mechanism of a metal-sensing regulatory RNA
-
Dann, C.E. III et al. Structure and mechanism of a metal-sensing regulatory RNA. Cell 130, 878-892 (2007).
-
(2007)
Cell
, vol.130
, pp. 878-892
-
-
Dann III, C.E.1
-
18
-
-
79956068747
-
CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers
-
Marchais, A., Duperrier, S., Durand, S., Gautheret, D. & Stragier, P. CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers. RNA Biol. 8, 358-364 (2011).
-
(2011)
RNA Biol.
, vol.8
, pp. 358-364
-
-
Marchais, A.1
Duperrier, S.2
Durand, S.3
Gautheret, D.4
Stragier, P.5
-
19
-
-
77955290032
-
Evidence for widespread gene control function by the ydaO riboswitch candidate
-
Block, K.F., Hammond, M.C. & Breaker, R.R. Evidence for widespread gene control function by the ydaO riboswitch candidate. J. Bacteriol. 192, 3983-3989 (2010).
-
(2010)
J. Bacteriol.
, vol.192
, pp. 3983-3989
-
-
Block, K.F.1
Hammond, M.C.2
Breaker, R.R.3
-
21
-
-
85011936067
-
Challenges of ligand identification for riboswitch candidates
-
Meyer, M.M. et al. Challenges of ligand identification for riboswitch candidates. RNA Biol. 8, 5-10 (2011).
-
(2011)
RNA Biol.
, vol.8
, pp. 5-10
-
-
Meyer, M.M.1
-
22
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
Breaker, R.R. Prospects for riboswitch discovery and analysis. Mol. Cell 43, 867-879 (2011).
-
(2011)
Mol. Cell
, vol.43
, pp. 867-879
-
-
Breaker R., .R.1
-
23
-
-
84870310480
-
The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis
-
Watson, P.Y. & Fedor, M.J. The ydaO motif is an ATP-sensing riboswitch in Bacillus subtilis. Nat. Chem. Biol. 8, 963-965 (2012).
-
(2012)
Nat. Chem. Biol.
, vol.8
, pp. 963-965
-
-
Watson, P.Y.1
Fedor, M.J.2
-
24
-
-
0032831634
-
Relationship between internucleotide linkage geometry and the stability of RNA
-
Soukup, G.A. & Breaker, R.R. Relationship between internucleotide linkage geometry and the stability of RNA. RNA 5, 1308-1325 (1999).
-
(1999)
RNA
, vol.5
, pp. 1308-1325
-
-
Soukup, G.A.1
Breaker, R.R.2
-
25
-
-
84897585709
-
In-line probing analysis of riboswitches
-
Regulski, E.E. & Breaker, R.R. In-line probing analysis of riboswitches. Methods Mol. Biol. 419, 53-67 (2008).
-
(2008)
Methods Mol. Biol.
, vol.419
, pp. 53-67
-
-
Regulski, E.E.1
Breaker, R.R.2
-
26
-
-
71449108155
-
Structural basis of ligand binding by a c-di-GMP riboswitch
-
Smith, K.D. et al. Structural basis of ligand binding by a c-di-GMP riboswitch. Nat. Struct. Mol. Biol. 16, 1218-1223 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1218-1223
-
-
Smith, K.D.1
-
27
-
-
84872534396
-
Identification of c-di-GMP derivatives resistance to an EAL domain phosphodiesterase
-
Shanahan, C.A., Gaffney, B.L., Jones, R.A. & Strobel, S.A. Identification of c-di-GMP derivatives resistance to an EAL domain phosphodiesterase. Biochemistry 52, 365-377 (2012).
-
(2012)
Biochemistry
, vol.52
, pp. 365-377
-
-
Shanahan, C.A.1
Gaffney, B.L.2
Jones, R.A.3
Strobel, S.A.4
-
28
-
-
0037453069
-
Transcription termination control of the S box system: Direct measurement of S-adenosylmethionine by the leader RNA
-
McDaniel, B.A., Grundy, F.J., Artsimovitch, I. & Henkin, T.M. Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. Proc. Natl. Acad. Sci. USA 100, 3083-3088 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3083-3088
-
-
McDaniel, B.A.1
Grundy, F.J.2
Artsimovitch, I.3
Henkin, T.M.4
-
29
-
-
0038476616
-
The riboswitch-mediated control of sulfur metabolism in bacteria
-
Epshtein, V., Mironov, A.S. & Nudler, E. The riboswitch-mediated control of sulfur metabolism in bacteria. Proc. Natl. Acad. Sci. USA 100, 5052-5056 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5052-5056
-
-
Epshtein, V.1
Mironov, A.S.2
Nudler, E.3
-
30
-
-
0242298623
-
An mRNA structure in bacteria that controls gene expression by binding lysine
-
Sudarsan, N., Wickiser, J.K., Nakamura, S., Ebert, M.S. & Breaker, R.R. An mRNA structure in bacteria that controls gene expression by binding lysine. Genes Dev. 17, 2688-2697 (2003).
-
(2003)
Genes Dev.
, vol.17
, pp. 2688-2697
-
-
Sudarsan, N.1
Wickiser, J.K.2
Nakamura, S.3
Ebert, M.S.4
Breaker, R.R.5
-
31
-
-
84872738066
-
Cyclic di-AMP homeostasis in Bacillus subtilis; Both lack and high level accumulation of the nucleotide are detrimental for cell growth
-
Mehne, F.M. et al. Cyclic di-AMP homeostasis in Bacillus subtilis; both lack and high level accumulation of the nucleotide are detrimental for cell growth. J. Biol. Chem. 288, 2004-2017 (2013).
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 2004-2017
-
-
Mehne, F.M.1
-
32
-
-
0032931055
-
Expression of a germination-specific amidase, SleB, of Bacilli in the forespore compartment of sporulating cells and its localization on the exterior side of the cortex in dormant spores
-
Moriyama, R. et al. Expression of a germination-specific amidase, SleB, of Bacilli in the forespore compartment of sporulating cells and its localization on the exterior side of the cortex in dormant spores. J. Bacteriol. 181, 2373-2378 (1999).
-
(1999)
J. Bacteriol.
, vol.181
, pp. 2373-2378
-
-
Moriyama, R.1
-
33
-
-
0345730811
-
Production of muramic ?-lactam in Bacillus subtilis spore peptidoglycan
-
Gilmore, M.E., Bandyopadhyay, D., Dean, A.M., Linnstaedt, S.D. & Popham, D.L. Production of muramic ?-lactam in Bacillus subtilis spore peptidoglycan. J. Bacteriol. 186, 80-89 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 80-89
-
-
Gilmore, M.E.1
Bandyopadhyay, D.2
Dean, A.M.3
Linnstaedt, S.D.4
Popham, D.L.5
-
34
-
-
37749054878
-
The resuscitation-promoting factors of Mycobacterium tuberculosis are required for virulence and resuscitation from dormancy but are collectively dispensable for growth in vitro
-
Kana, B.D. et al. The resuscitation-promoting factors of Mycobacterium tuberculosis are required for virulence and resuscitation from dormancy but are collectively dispensable for growth in vitro. Mol. Microbiol. 67, 672-684 (2008).
-
(2008)
Mol. Microbiol.
, vol.67
, pp. 672-684
-
-
Kana, B.D.1
-
35
-
-
74549179022
-
Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling
-
Kana, B.D. & Mizrahi, V. Resuscitation-promoting factors as lytic enzymes for bacterial growth and signaling. FEMS Immunol. Med. Microbiol. 58, 39-50 (2010).
-
(2010)
FEMS Immunol. Med. Microbiol.
, vol.58
, pp. 39-50
-
-
Kana, B.D.1
Mizrahi, V.2
-
36
-
-
62049086072
-
Cocrystal structure of a class i preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase
-
Klein, D.J., Edwards, T.E. & Ferré-D'Amaré, A.R. Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nat. Struct. Mol. Biol. 16, 343-344 (2009).
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 343-344
-
-
Klein, D.J.1
Edwards, T.E.2
Ferré-D'Amaré, A.R.3
-
37
-
-
62549154008
-
Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA
-
Kang, M., Peterson, R. & Feigon, J. Structural insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA. Mol. Cell 33, 784-790 (2009).
-
(2009)
Mol. Cell
, vol.33
, pp. 784-790
-
-
Kang, M.1
Peterson, R.2
Feigon, J.3
-
38
-
-
84861920270
-
Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch
-
Ren, A., Rajashankar, K.R. & Patel, D.J. Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature 486, 85-89 (2012).
-
(2012)
Nature
, vol.486
, pp. 85-89
-
-
Ren, A.1
Rajashankar, K.R.2
Patel, D.J.3
-
39
-
-
15944382675
-
The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch
-
Wickiser, J.K., Winkler, W.C., Breaker, R.R. & Crothers, D.M. The speed of RNA transcription and metabolite binding kinetics operate an FMN riboswitch. Mol. Cell 18, 49-60 (2005).
-
(2005)
Mol. Cell
, vol.18
, pp. 49-60
-
-
Wickiser, J.K.1
Winkler, W.C.2
Breaker, R.R.3
Crothers, D.M.4
-
40
-
-
26444620938
-
The kinetics of ligand binding by an adenosine-sensing riboswitch
-
Wickiser, J.K., Cheah, M.T., Breaker, R.R. & Crothers, D.M. The kinetics of ligand binding by an adenosine-sensing riboswitch. Biochemistry 44, 13404-13414 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 13404-13414
-
-
Wickiser, J.K.1
Cheah, M.T.2
Breaker, R.R.3
Crothers, D.M.4
-
41
-
-
33646768226
-
Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain
-
Gilbert, S.D., Stoddard, C.D., Wise, S.J. & Batey, R.T. Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain. J. Mol. Biol. 359, 754-768 (2006).
-
(2006)
J. Mol. Biol.
, vol.359
, pp. 754-768
-
-
Gilbert, S.D.1
Stoddard, C.D.2
Wise, S.J.3
Batey, R.T.4
-
42
-
-
79851499341
-
Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms
-
Lemay, J.-F. et al. Comparative study between transcriptionally- and translationally-acting adenine riboswitches reveals key differences in riboswitch regulatory mechanisms. PLoS Genet. 7, e1001278 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Lemay, J.-F.1
-
43
-
-
80052982281
-
The dynamic nature of RNA as key to understanding riboswitch mechanisms
-
Haller, A., Soulière, M.F. & Micura, R. The dynamic nature of RNA as key to understanding riboswitch mechanisms. Acc. Chem. Res. 44, 1339-1348 (2011).
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1339-1348
-
-
Haller, A.1
Soulière, M.F.2
Micura, R.3
-
44
-
-
84867629183
-
Direct observation of cotranscriptional folding in an adenine riboswitch
-
Frieda, K.L. & Block, S.M. Direct observation of cotranscriptional folding in an adenine riboswitch. Science 338, 397-400 (2012).
-
(2012)
Science
, vol.338
, pp. 397-400
-
-
Frieda, K.L.1
Block, S.M.2
-
45
-
-
78149300889
-
Structural basis for recognition of S-adenylhomocysteine by riboswitches
-
Edwards, A.L., Reyes, F.E., Héroux, A. & Batey, R.T. Structural basis for recognition of S-adenylhomocysteine by riboswitches. RNA 16, 2144-2155 (2010).
-
(2010)
RNA
, vol.16
, pp. 2144-2155
-
-
Edwards, A.L.1
Reyes, F.E.2
Héroux, A.3
Batey, R.T.4
-
46
-
-
40849147457
-
Riboswitches that sense S-adenylhomocysteine and activate genes involved in coenzyme recycling
-
Wang, J.X., Lee, E.R., Morales, D.R., Lim, J. & Breaker, R.R. Riboswitches that sense S-adenylhomocysteine and activate genes involved in coenzyme recycling. Mol. Cell 29, 691-702 (2008).
-
(2008)
Mol. Cell
, vol.29
, pp. 691-702
-
-
Wang, J.X.1
Lee, E.R.2
Morales, D.R.3
Lim, J.4
Breaker, R.R.5
-
47
-
-
77954070545
-
C-di-AMP secreted by intracellular Listeria monocytogenes activates a host type i interferon response
-
Woodward, J.J., Iavarone, A.T. & Portnoy, D.A. c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response. Science 328, 1703-1705 (2010).
-
(2010)
Science
, vol.328
, pp. 1703-1705
-
-
Woodward, J.J.1
Iavarone, A.T.2
Portnoy, D.A.3
-
48
-
-
38449113492
-
New bioinformatics resources for metabolomics
-
Markley, J.L. et al. New bioinformatics resources for metabolomics. Pac. Symp. Biocomput. 2007, 157-168 (2007).
-
(2007)
Pac. Symp. Biocomput.
, vol.2007
, pp. 157-168
-
-
Markley, J.L.1
-
49
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular datasets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. & Tanabe, M. KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res. 40, D109-D114 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
50
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M. & Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
51
-
-
0029871347
-
PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S
-
Wach, A. PCR-synthesis of marker cassettes with long flanking homology regions for gene disruptions in S. cerevisiae. Yeast 12, 259-265 (1996).
-
(1996)
Cerevisiae. Yeast
, vol.12
, pp. 259-265
-
-
Wach, A.1
-
52
-
-
33646854383
-
One-step high-throughput assay for quantitative detection of ?-galactosidase activity in intact Gram-negative bacteria, yeast, and mammalian cells
-
Vidal-Aroca, F. et al. One-step high-throughput assay for quantitative detection of ?-galactosidase activity in intact Gram-negative bacteria, yeast, and mammalian cells. Biotechniques 40, 433-434 (2006).
-
(2006)
Biotechniques
, vol.40
, pp. 433-434
-
-
Vidal-Aroca, F.1
-
53
-
-
46349083026
-
The distributions, mechanisms, and structures of metabolite-binding riboswitches
-
Barrick, J.E. & Breaker, R.R. The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol. 8, R239 (2007).
-
(2007)
Genome Biol.
, vol.8
-
-
Barrick, J.E.1
Breaker, R.R.2
-
54
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E.P., Kolbe, D.L. & Eddy, S.R. Infernal 1.0: inference of RNA alignments. Bioinformatics 25, 1335-1337 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
55
-
-
70849110294
-
Bioinformatics RNA secondary structure analysis using the vienna RNA package
-
2
-
Hofacker, I.L. Curr. Prot. Bioinformatics RNA secondary structure analysis using the Vienna RNA package. 26, 12.2 (2009).
-
(2009)
Curr. Prot.
, vol.26
, pp. 12
-
-
Hofacker I., .L.1
-
56
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts, and proteins
-
Pruitt, K.D., Tatusova, T. & Maglott, D.R. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts, and proteins. Nucleic Acids Res. 35, D61-D65 (2007).
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
57
-
-
84865741828
-
The human microbiome project: A community resource for the healthy human microbiome
-
Gevers, D. et al. The human microbiome project: a community resource for the healthy human microbiome. PLoS Biol. 10, e1001377 (2012).
-
(2012)
PLoS Biol.
, vol.10
-
-
Gevers, D.1
-
58
-
-
38549139537
-
IMG/M: A data management and analysis system for metagenomes
-
Markowitz, V.M. et al. IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res. 36, D534-D538 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Markowitz, V.M.1
-
59
-
-
53549118607
-
The metagenomics RAST server- A public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer, F. et al. The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9, 386-393 (2008).
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386-393
-
-
Meyer, F.1
-
60
-
-
78651266825
-
Community cyberinfrastructure for advanced microbial ecology research and analysis: The CAMERA resource
-
Sun, S. et al. Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource. Nucleic Acids Res. 39, D546-D551 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Sun, S.1
-
61
-
-
38549164691
-
Genbank
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. & Wheeler, D.L. Genbank. Nucleic Acids Res. 36, D25-D30 (2008).
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Wheeler, D.L.5
-
62
-
-
84887991402
-
A novel class of self-cleaving ribozymes is present in many species of bacteria and eukarya
-
(in the press)
-
Roth, A. et al. A novel class of self-cleaving ribozymes is present in many species of bacteria and eukarya. Nat. Chem. Biol. (in the press).
-
Nat. Chem. Biol.
-
-
Roth, A.1
-
63
-
-
0028221642
-
Volume changes on protein evolution
-
Gerstein, M., Sonnhammer, E.L.L. & Chothia, C. Volume changes on protein evolution. J. Mol. Biol. 236, 1067-1078 (1994).
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 1067-1078
-
-
Gerstein, M.1
Sonnhammer, E.L.L.2
Chothia, C.3
|