-
1
-
-
0026093011
-
Cellulose biosynthesis and function in bacteria
-
Ross P, Mayer R, Benziman M (1991) Cellulose biosynthesis and function in bacteria. Microbiol Rev 55:35-58. (Pubitemid 21895145)
-
(1991)
Microbiological Reviews
, vol.55
, Issue.1
, pp. 35-58
-
-
Ross, P.1
Mayer, R.2
Benziman, M.3
-
2
-
-
0023090935
-
Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid
-
DOI 10.1038/325279a0
-
Ross P, Weinhouse H, Aloni Y, Michaeli D, Weinberger-Ohana P, Mayer R, Braun S, de Vroom E, van der Marel GA, van Boom JH, Benziman M (1987) Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid. Nature 325:279-281. (Pubitemid 17049892)
-
(1987)
Nature
, vol.325
, Issue.6101
, pp. 279-281
-
-
Ross, P.1
Weinhouse, H.2
Aloni, Y.3
-
4
-
-
33845403359
-
Mechanisms of cyclic-di-GMP signaling in bacteria
-
DOI 10.1146/annurev.genet.40.110405.090423
-
Jenal U, Malone J (2006) Mechanisms of cyclic-di-GMP signaling in bacteria. Annu Rev Genet 40:385-407. (Pubitemid 44956791)
-
(2006)
Annual Review of Genetics
, vol.40
, pp. 385-407
-
-
Jenal, U.1
Malone, J.2
-
5
-
-
32444447802
-
Keeping their options open: Acute versus persistent infections
-
DOI 10.1128/JB.188.4.1211-1217.2006
-
Furukawa S, Kuchma SL, O'Toole GA (2006) Keeping their options open: acute versus persistent infections. J Bacteriol 188:1211-1217. (Pubitemid 43228652)
-
(2006)
Journal of Bacteriology
, vol.188
, Issue.4
, pp. 1211-1217
-
-
Furukawa, S.1
Kuchma, S.L.2
O'Toole, G.A.3
-
6
-
-
0242523776
-
Bacterial Biofilms: An Emerging Link to Disease Pathogenesis
-
DOI 10.1146/annurev.micro.57.030502.090720
-
Parsek MR, Singh PK (2003) Bacterial biofilms: an emerging link to disease pathogenesis. Annu Rev Microbiol 57:677-701. (Pubitemid 37392958)
-
(2003)
Annual Review of Microbiology
, vol.57
, pp. 677-701
-
-
Parsek, M.R.1
Singh, P.K.2
-
7
-
-
33744983969
-
Structural classification of bacterial response regulators: Diversity of output domains and domain combinations
-
Galperin MY (2006) Structural classification of bacterial response regulators: diversity of output domains and domain combinations. J Bacteriol 188:4169-4182.
-
(2006)
J Bacteriol
, vol.188
, pp. 4169-4182
-
-
Galperin, M.Y.1
-
8
-
-
0035845587
-
Novel domains of the prokaryotic two-component signal transduction systems
-
DOI 10.1016/S0378-1097(01)00326-3, PII S0378109701003263
-
Galperin MY, Nikolskaya AN, Koonin EV (2001) Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol Lett 203:11-21. (Pubitemid 32830987)
-
(2001)
FEMS Microbiology Letters
, vol.203
, Issue.1
, pp. 11-21
-
-
Galperin, M.Y.1
Nikolskaya, A.N.2
Koonin, E.V.3
-
10
-
-
0024799191
-
Prokaryotic signal transduction mediated by sensor and regulator protein pairs
-
Albright LM, Huala E, Ausubel FM (1989) Prokaryotic signal transduction mediated by sensor and regulator protein pairs. Annu Rev Genet 23:311-336. (Pubitemid 20033406)
-
(1989)
Annual Review of Genetics
, vol.23
, pp. 311-336
-
-
Albright, L.M.1
Huala, E.2
Ausubel, F.M.3
-
11
-
-
0035254950
-
GGDEF domain is homologous to adenylyl cyclase
-
DOI 10.1002/1097-0134(20010201)42:2<210::AID-PROT80>3.0.CO;2-8
-
Pei J, Grishin NV (2001) GGDEF domain is homologous to adenylyl cyclase. Proteins 42:210-216. (Pubitemid 32047329)
-
(2001)
Proteins: Structure, Function and Genetics
, vol.42
, Issue.2
, pp. 210-216
-
-
Pei, J.1
Grishin, N.V.2
-
12
-
-
0028844985
-
Identification of a novel response regulator required for the swarmer-to-stalked-cell transition in Caulobacter crescentus
-
Hecht GB, Newton A (1995) Identification of a novel response regulator required for the swarmer-to-stalked-cell transition in Caulobacter crescentus. J Bacteriol 177:6223-6229.
-
(1995)
J Bacteriol
, vol.177
, pp. 6223-6229
-
-
Hecht, G.B.1
Newton, A.2
-
14
-
-
0031783181
-
Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: Genetic organization and occurrence of conserved domains in isoenzymes
-
Tal R, Wong HC, Calhoon R, Gelfand D, Fear AL, Volman G, Mayer R, Ross P, Amikam D, Weinhouse H, Cohen A, Sapir S, Ohana P, Benziman M (1998) Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes. J Bacteriol 180:4416-4425. (Pubitemid 28405564)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.17
, pp. 4416-4425
-
-
Tal, R.1
Wong, H.C.2
Calhoon, R.3
Gelfand, D.4
Fear, A.L.5
Volman, G.6
Mayer, R.7
Ross, P.8
Amikam, D.9
Weinhouse, H.10
Cohen, A.11
Sapir, S.12
Ohana, P.13
Benziman, M.14
-
15
-
-
4344688129
-
GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessibility to motility
-
DOI 10.1111/j.1365-2958.2004.04206.x
-
Simm R, Morr M, Kader A, Nimtz M, Romling U (2004) GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility. Mol Microbiol 53:1123-1134. (Pubitemid 39120434)
-
(2004)
Molecular Microbiology
, vol.53
, Issue.4
, pp. 1123-1134
-
-
Simm, R.1
Morr, M.2
Kader, A.3
Nimtz, M.4
Romling, U.5
-
16
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer T, Jenal U (2009) Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 7:724-735.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
17
-
-
33646249963
-
Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
-
Ryan RP, Fouhy Y, Lucey JF, Crossman LC, Spiro S, He YW, Zhang LH, Heeb S, Camara M, Williams P, Dow JM (2006) Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc Natl Acad Sci USA 103:6712-6717.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 6712-6717
-
-
Ryan, R.P.1
Fouhy, Y.2
Lucey, J.F.3
Crossman, L.C.4
Spiro, S.5
He, Y.W.6
Zhang, L.H.7
Heeb, S.8
Camara, M.9
Williams, P.10
Dow, J.M.11
-
18
-
-
4444250897
-
Cyclic di-GMP as a bacterial second messenger
-
D'Argenio DA, Miller SI (2004) Cyclic di-GMP as a bacterial second messenger. Microbiology 150:2497-2502. (Pubitemid 39173255)
-
(2004)
Microbiology
, vol.150
, Issue.8
, pp. 2497-2502
-
-
D'Argenio, D.A.1
Miller, S.I.2
-
19
-
-
22644438480
-
C-di-GMP: The dawning of a novel bacterial signalling system
-
DOI 10.1111/j.1365-2958.2005.04697.x
-
Romling U, Gomelsky M, Galperin MY (2005) C-di-GMP: the dawning of a novel bacterial signalling system. Mol Microbiol 57:629-639. (Pubitemid 41025947)
-
(2005)
Molecular Microbiology
, vol.57
, Issue.3
, pp. 629-639
-
-
Romling, U.1
Gomelsky, M.2
Galperin, M.Y.3
-
20
-
-
38749146920
-
Get the message out: Cyclic-Di-GMP regulates multiple levels of flagellum-based motility
-
DOI 10.1128/JB.01418-07
-
Wolfe AJ, Visick KL (2008) Get the message out: cyclic-Di-GMP regulates multiple levels of flagellum-based motility. J Bacteriol 190:463-475. (Pubitemid 351360062)
-
(2008)
Journal of Bacteriology
, vol.190
, Issue.2
, pp. 463-475
-
-
Wolfe, A.J.1
Visick, K.L.2
-
21
-
-
23944431512
-
Cyclic diguanylate regulates Vibrio cholerae virulence gene expression
-
DOI 10.1128/IAI.73.9.5873-5882.2005
-
Tischler AD, Camilli A (2005) Cyclic diguanylate regulates Vibrio cholerae virulence gene expression. Infect Immun 73:5873-5882. (Pubitemid 41193024)
-
(2005)
Infection and Immunity
, vol.73
, Issue.9
, pp. 5873-5882
-
-
Tischler, A.D.1
Camilli, A.2
-
22
-
-
62549150834
-
LapD is a bis-(3′,5′)-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1
-
Newell PD, Monds RD, O'Toole GA (2009) LapD is a bis-(3′,5′)- cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1. Proc Natl Acad Sci USA 106:3461-3466.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 3461-3466
-
-
Newell, P.D.1
Monds, R.D.2
O'Toole, G.A.3
-
23
-
-
34249816800
-
ScrG, a GGDEF-EAL protein, participates in regulating swarming and sticking in Vibrio parahaemolyticus
-
Kim YK, McCarter LL (2007) ScrG, a GGDEF-EAL protein, participates in regulating swarming and sticking in Vibrio parahaemolyticus. J Bacteriol 189:4094-4107.
-
(2007)
J Bacteriol
, vol.189
, pp. 4094-4107
-
-
Kim, Y.K.1
McCarter, L.L.2
-
24
-
-
33644516891
-
Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3′-5′)-cyclic-GMP in virulence
-
Kulasakara H, Lee V, Brencic A, Liberati N, Urbach J, Miyata S, Lee DG, Neely AN, Hyodo M, Hayakawa Y, Ausubel FM, Lory S (2006) Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3′-5′)-cyclic-GMP in virulence. Proc Natl Acad Sci USA 103:2839-2844.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2839-2844
-
-
Kulasakara, H.1
Lee, V.2
Brencic, A.3
Liberati, N.4
Urbach, J.5
Miyata, S.6
Lee, D.G.7
Neely, A.N.8
Hyodo, M.9
Hayakawa, Y.10
Ausubel, F.M.11
Lory, S.12
-
25
-
-
0030734277
-
C-di-GMP-binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum
-
DOI 10.1016/S0014-5793(97)01202-7, PII S0014579397012027
-
Weinhouse H, Sapir S, Amikam D, Shilo Y, Volman G, Ohana P, Benziman M (1997) c-di-GMP- binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum. FEBS Lett 416:207-211. (Pubitemid 27462790)
-
(1997)
FEBS Letters
, vol.416
, Issue.2
, pp. 207-211
-
-
Weinhouse, H.1
Sapir, S.2
Amikam, D.3
Shilo, Y.4
Volman, G.5
Ohana, P.6
Benziman, M.7
-
26
-
-
30344469912
-
PilZ domain is part of the bacterial c-di-GMP binding protein
-
DOI 10.1093/bioinformatics/bti739
-
Amikam D, Galperin MY (2006) PilZ domain is part of the bacterial c-di-GMP binding protein. Bioinformatics 22:3-6. (Pubitemid 43057001)
-
(2006)
Bioinformatics
, vol.22
, Issue.1
, pp. 3-6
-
-
Amikam, D.1
Galperin, M.Y.2
-
27
-
-
33750044865
-
The PilZ domain is a receptor for the second messenger c-di-GMP: The PilZ domain protein YcgR controls motility in enterobacteria
-
DOI 10.1074/jbc.C600179200
-
Ryjenkov DA, Simm R, Romling U, Gomelsky M (2006) The PilZ domain is a receptor for the second messenger c-di-GMP: the PilZ domain protein YcgR controls motility in enterobacteria. J Biol Chem 281:30310-30314. (Pubitemid 44582083)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.41
, pp. 30310-30314
-
-
Ryjenkov, D.A.1
Simm, R.2
Romling, U.3
Gomelsky, M.4
-
28
-
-
37149042731
-
The structural basis of cyclic diguanylate signal transduction by PilZ domains
-
DOI 10.1038/sj.emboj.7601918, PII 7601918
-
Benach J, Swaminathan SS, Tamayo R, Handelman SK, Folta-Stogniew E, Ramos JE, Forouhar F, Neely H, Seetharaman J, Camilli A, Hunt JF (2007) The structural basis of cyclic diguanylate signal transduction by PilZ domains. EMBO J 26:5153-5166. (Pubitemid 350261281)
-
(2007)
EMBO Journal
, vol.26
, Issue.24
, pp. 5153-5166
-
-
Benach, J.1
Swaminathan, S.S.2
Tamayo, R.3
Handelman, S.K.4
Folta-Stogniew, E.5
Ramos, J.E.6
Forouhar, F.7
Neely, H.8
Seetharaman, J.9
Camilli, A.10
Hunt, J.F.11
-
29
-
-
34250358327
-
PilZ domain proteins bind cyclic diguanylate and regulate diverse processes in Vibrio cholerae
-
DOI 10.1074/jbc.M611593200
-
Pratt JT, Tamayo R, Tischler AD, Camilli A (2007) PilZ domain proteins bind cyclic diguanylate and regulate diverse processes in Vibrio cholerae. J Biol Chem 282:12860-12870. (Pubitemid 47100636)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.17
, pp. 12860-12870
-
-
Pratt, J.T.1
Tamayo, R.2
Tischler, A.D.3
Camilli, A.4
-
30
-
-
33846006935
-
NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein
-
DOI 10.1002/prot.21199
-
Ramelot TA, Yee A, Cort JR, Semesi A, Arrowsmith CH, Kennedy MA (2007) NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein. Proteins 66:266-271. (Pubitemid 46053461)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.66
, Issue.2
, pp. 266-271
-
-
Ramelot, T.A.1
Yee, A.2
Cort, J.R.3
Semesi, A.4
Arrowsmith, C.H.5
Kennedy, M.A.6
-
31
-
-
77950859347
-
Structure of PP4397 reveals the molecular basis for different c-di-GMP binding modes by Pilz domain proteins
-
Ko J, Ryu KS, Kim H, Shin JS, Lee JO, Cheong C, Choi BS (2010) Structure of PP4397 reveals the molecular basis for different c-di-GMP binding modes by Pilz domain proteins. J Mol Biol 398:97-110.
-
(2010)
J Mol Biol
, vol.398
, pp. 97-110
-
-
Ko, J.1
Ryu, K.S.2
Kim, H.3
Shin, J.S.4
Lee, J.O.5
Cheong, C.6
Choi, B.S.7
-
32
-
-
79954598477
-
Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout
-
Habazettl J, Allan MG, Jenal U, Grzesiek S (2011) Solution structure of the PilZ domain protein PA4608 complex with cyclic di-GMP identifies charge clustering as molecular readout. J Biol Chem 286:14304-14314.
-
(2011)
J Biol Chem
, vol.286
, pp. 14304-14314
-
-
Habazettl, J.1
Allan, M.G.2
Jenal, U.3
Grzesiek, S.4
-
33
-
-
55549090691
-
Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae
-
Beyhan S, Odell LS, Yildiz FH (2008) Identification and characterization of cyclic diguanylate signaling systems controlling rugosity in Vibrio cholerae. J Bacteriol 190:7392-7405.
-
(2008)
J Bacteriol
, vol.190
, pp. 7392-7405
-
-
Beyhan, S.1
Odell, L.S.2
Yildiz, F.H.3
-
34
-
-
47749152941
-
Riboswitches in eubacteria sense the second messenger cyclic Di-GMP
-
DOI 10.1126/science.1159519
-
Sudarsan N, Lee ER, Weinberg Z, Moy RH, Kim JN, Link KH, Breaker RR (2008) Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science 321:411-413. (Pubitemid 352029978)
-
(2008)
Science
, vol.321
, Issue.5887
, pp. 411-413
-
-
Sudarsan, N.1
Lee, E.R.2
Weinberg, Z.3
Moy, R.H.4
Kim, J.N.5
Link, K.H.6
Breaker, R.R.7
-
35
-
-
68149172669
-
Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX
-
Navarro MV, De N, Bae N, Wang Q, Sondermann H (2009) Structural analysis of the GGDEF-EAL domain-containing c-di-GMP receptor FimX. Structure 17:1104-1116.
-
(2009)
Structure
, vol.17
, pp. 1104-1116
-
-
Navarro, M.V.1
De, N.2
Bae, N.3
Wang, Q.4
Sondermann, H.5
-
36
-
-
34548303826
-
A cyclic-di-GMP receptor required for bacterial exopolysaccharide production
-
DOI 10.1111/j.1365-2958.2007.05879.x
-
Lee VT, Matewish JM, Kessler JL, Hyodo M, Hayakawa Y, Lory S (2007) A cyclic-di-GMP receptor required for bacterial exopolysaccharide production. Mol Microbiol 65:1474-1484. (Pubitemid 47347829)
-
(2007)
Molecular Microbiology
, vol.65
, Issue.6
, pp. 1474-1484
-
-
Lee, V.T.1
Matewish, J.M.2
Kessler, J.L.3
Hyodo, M.4
Hayakawa, Y.5
Lory, S.6
-
37
-
-
76749083886
-
Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP
-
Krasteva PV, Fong JC, Shikuma NJ, Beyhan S, Navarro MV, Yildiz FH, Sondermann H (2010) Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science 327:866-868.
-
(2010)
Science
, vol.327
, pp. 866-868
-
-
Krasteva, P.V.1
Fong, J.C.2
Shikuma, N.J.3
Beyhan, S.4
Navarro, M.V.5
Yildiz, F.H.6
Sondermann, H.7
-
38
-
-
47249089614
-
Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factor
-
DOI 10.1111/j.1365-2958.2008.06281.x
-
Hickman JW, Harwood CS (2008) Identification of FleQ from Pseudomonas aeruginosa as a c-di-GMP-responsive transcription factor. Mol Microbiol 69:376-389. (Pubitemid 351988011)
-
(2008)
Molecular Microbiology
, vol.69
, Issue.2
, pp. 376-389
-
-
Hickman, J.W.1
Harwood, C.S.2
-
39
-
-
41749103519
-
Phosphorylation-independent regulation of the diguanylate cyclase WspR
-
De N, Pirruccello M, Krasteva PV, Bae N, Raghavan RV, Sondermann H (2008) Phosphorylation-independent regulation of the diguanylate cyclase WspR. PLoS Biol 6:e67.
-
(2008)
PLoS Biol
, vol.6
-
-
De, N.1
Pirruccello, M.2
Krasteva, P.V.3
Bae, N.4
Raghavan, R.V.5
Sondermann, H.6
-
40
-
-
77949325119
-
The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris
-
Chin KH, Lee YC, Tu ZL, Chen CH, Tseng YH, Yang JM, Ryan RP, McCarthy Y, Dow JM, Wang AH, Chou SH (2010) The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris. J Mol Biol 396:646-662.
-
(2010)
J Mol Biol
, vol.396
, pp. 646-662
-
-
Chin, K.H.1
Lee, Y.C.2
Tu, Z.L.3
Chen, C.H.4
Tseng, Y.H.5
Yang, J.M.6
Ryan, R.P.7
McCarthy, Y.8
Dow, J.M.9
Wang, A.H.10
Chou, S.H.11
-
41
-
-
10344238965
-
Structural basis of activity and allosteric control of diguanylate cyclase
-
DOI 10.1073/pnas.0406134101
-
Chan C, Paul R, Samoray D, Amiot NC, Giese B, Jenal U, Schirmer T (2004) Structural basis of activity and allosteric control of diguanylate cyclase. Proc Natl Acad Sci USA 101:17084-17089. (Pubitemid 39627778)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.49
, pp. 17084-17089
-
-
Chan, C.1
Paul, R.2
Samoray, D.3
Amiot, N.C.4
Giese, B.5
Jenal, U.6
Schirmer, T.7
-
43
-
-
70350436270
-
Cyclic di-GMP allosterically inhibits the CRP-like protein (Clp) of Xanthomonas axonopodis pv. citri
-
Leduc JL, Roberts GP (2009) Cyclic di-GMP allosterically inhibits the CRP-like protein (Clp) of Xanthomonas axonopodis pv. citri. J Bacteriol 191:7121-7122.
-
(2009)
J Bacteriol
, vol.191
, pp. 7121-7122
-
-
Leduc, J.L.1
Roberts, G.P.2
-
44
-
-
34547659282
-
--Modified Response Regulator PleD: Implications for Diguanylate Cyclase Activation, Catalysis, and Feedback Inhibition
-
DOI 10.1016/j.str.2007.06.016, PII S0969212607002493
-
Wassmann P, Chan C, Paul R, Beck A, Heerklotz H, Jenal U, Schirmer T (2007) Structure of BeF3- -modified response regulator PleD: implications for diguanylate cyclase activation, catalysis, and feedback inhibition. Structure 15:915-927. (Pubitemid 47212753)
-
(2007)
Structure
, vol.15
, Issue.8
, pp. 915-927
-
-
Wassmann, P.1
Chan, C.2
Paul, R.3
Beck, A.4
Heerklotz, H.5
Jenal, U.6
Schirmer, T.7
-
45
-
-
70349783823
-
Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR
-
De N, Navarro MV, Raghavan RV, Sondermann H (2009) Determinants for the activation and autoinhibition of the diguanylate cyclase response regulator WspR. J Mol Biol 393:619-633.
-
(2009)
J Mol Biol
, vol.393
, pp. 619-633
-
-
De, N.1
Navarro, M.V.2
Raghavan, R.V.3
Sondermann, H.4
-
46
-
-
67649746308
-
Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains
-
Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, Basle A, Massa C, Collart FR, Schirmer T, Anderson WF (2009) Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains. J Biol Chem 284:13174-13184.
-
(2009)
J Biol Chem
, vol.284
, pp. 13174-13184
-
-
Minasov, G.1
Padavattan, S.2
Shuvalova, L.3
Brunzelle, J.S.4
Miller, D.J.5
Basle, A.6
Massa, C.7
Collart, F.R.8
Schirmer, T.9
Anderson, W.F.10
-
47
-
-
67649295467
-
Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase
-
Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I (2009) Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase. Nature 459:1015-1018.
-
(2009)
Nature
, vol.459
, pp. 1015-1018
-
-
Barends, T.R.1
Hartmann, E.2
Griese, J.J.3
Beitlich, T.4
Kirienko, N.V.5
Ryjenkov, D.A.6
Reinstein, J.7
Shoeman, R.L.8
Gomelsky, M.9
Schlichting, I.10
-
48
-
-
80455158430
-
The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases
-
Lovering AL, Capeness MJ, Lambert C, Hobley L, Sockett RE (2011) The structure of an unconventional HD-GYP protein from Bdellovibrio reveals the roles of conserved residues in this class of cyclic-di-GMP phosphodiesterases. MBio 2:e00163-11.
-
(2011)
MBio
, vol.2
-
-
Lovering, A.L.1
Capeness, M.J.2
Lambert, C.3
Hobley, L.4
Sockett, R.E.5
-
49
-
-
79952260048
-
Structural basis for c-di-GMP-mediated inside-out signaling controlling periplasmic proteolysis
-
Navarro MV, Newell PD, Krasteva PV, Chatterjee D, Madden DR, O'Toole GA, Sondermann H (2011) Structural basis for c-di-GMP-mediated inside-out signaling controlling periplasmic proteolysis. PLoS Biol 9:e1000588.
-
(2011)
PLoS Biol
, vol.9
-
-
Navarro, M.V.1
Newell, P.D.2
Krasteva, P.V.3
Chatterjee, D.4
Madden, D.R.5
O'Toole, G.A.6
Sondermann, H.7
-
50
-
-
55549093442
-
Crystal structure of Escherichia coli PNPase: Central channel residues are involved in processive RNA degradation
-
Shi Z, Yang WZ, Lin-Chao S, Chak KF, Yuan HS (2008) Crystal structure of Escherichia coli PNPase: central channel residues are involved in processive RNA degradation. RNA 14:2361-2371.
-
(2008)
RNA
, vol.14
, pp. 2361-2371
-
-
Shi, Z.1
Yang, W.Z.2
Lin-Chao, S.3
Chak, K.F.4
Yuan, H.S.5
-
52
-
-
35748950123
-
Activation of the diguanylate cyclase PleD by phosphorylation-mediated dimerization
-
DOI 10.1074/jbc.M704702200
-
Paul R, Abel S, Wassmann P, Beck A, Heerklotz H, Jenal U (2007) Activation of the diguanylate cyclase PleD by phosphorylation-mediated dimerization. J Biol Chem 282:29170-29177. (Pubitemid 350043379)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.40
, pp. 29170-29177
-
-
Paul, R.1
Abel, S.2
Wassmann, P.3
Beck, A.4
Heerklotz, H.5
Jenal, U.6
-
53
-
-
33750441136
-
Allosteric control of cyclic di-GMP signaling
-
DOI 10.1074/jbc.M603589200
-
Christen B, Christen M, Paul R, Schmid F, Folcher M, Jenoe P, Meuwly M, Jenal U (2006) Allosteric control of cyclic di-GMP signaling. J Biol Chem 281:32015-32024. (Pubitemid 46041462)
-
(2006)
Journal of Biological Chemistry
, vol.281
, Issue.42
, pp. 32015-32024
-
-
Christen, B.1
Christen, M.2
Paul, R.3
Schmid, F.4
Folcher, M.5
Jenoe, P.6
Meuwly, M.7
Jenal, U.8
-
54
-
-
67749113278
-
The functional role of a conserved loop in EAL domain-based cyclic di-GMP-specific phosphodiesterase
-
Rao F, Qi Y, Chong HS, Kotaka M, Li B, Li J, Lescar J, Tang K, Liang ZX (2009) The functional role of a conserved loop in EAL domain-based cyclic di-GMP-specific phosphodiesterase. J Bacteriol 191:4722-4731.
-
(2009)
J Bacteriol
, vol.191
, pp. 4722-4731
-
-
Rao, F.1
Qi, Y.2
Chong, H.S.3
Kotaka, M.4
Li, B.5
Li, J.6
Lescar, J.7
Tang, K.8
Liang, Z.X.9
-
55
-
-
47049115663
-
Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: A study of the EAL domain-containing RocR from Pseudomonas aeruginosa
-
Rao F, Yang Y, Qi Y, Liang ZX (2008) Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: a study of the EAL domain-containing RocR from Pseudomonas aeruginosa. J Bacteriol 190:3622-3631.
-
(2008)
J Bacteriol
, vol.190
, pp. 3622-3631
-
-
Rao, F.1
Yang, Y.2
Qi, Y.3
Liang, Z.X.4
-
56
-
-
77956921553
-
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases
-
Tchigvintsev A, Xu X, Singer A, Chang C, Brown G, Proudfoot M, Cui H, Flick R, Anderson WF, Joachimiak A, Galperin MY, Savchenko A, Yakunin AF (2010) Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. J Mol Biol 402:524-538.
-
(2010)
J Mol Biol
, vol.402
, pp. 524-538
-
-
Tchigvintsev, A.1
Xu, X.2
Singer, A.3
Chang, C.4
Brown, G.5
Proudfoot, M.6
Cui, H.7
Flick, R.8
Anderson, W.F.9
Joachimiak, A.10
Galperin, M.Y.11
Savchenko, A.12
Yakunin, A.F.13
-
57
-
-
0036384350
-
One fold with many functions: The evolutionary relationships between TIM barrel families based on their sequences, structures and functions
-
Nagano N, Orengo CA, Thornton JM (2002) One fold with many functions: the evolutionary relationships between TIM barrel families based on their sequences, structures and functions. J Mol Biol 321:741-765.
-
(2002)
J Mol Biol
, vol.321
, pp. 741-765
-
-
Nagano, N.1
Orengo, C.A.2
Thornton, J.M.3
-
58
-
-
24744457756
-
Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP
-
DOI 10.1074/jbc.M504429200
-
Christen M, Christen B, Folcher M, Schauerte A, Jenal U (2005) Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP. J Biol Chem 280:30829-30837. (Pubitemid 41291813)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.35
, pp. 30829-30837
-
-
Christen, M.1
Christen, B.2
Folcher, M.3
Schauerte, A.4
Jenal, U.5
-
59
-
-
21844451590
-
The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: Enzymatically active and inactive EAL domains
-
DOI 10.1128/JB.187.14.4774-4781.2005
-
Schmidt AJ, Ryjenkov DA, Gomelsky M (2005) The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains. J Bacteriol 187:4774-4781. (Pubitemid 40962195)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.14
, pp. 4774-4781
-
-
Schmidt, A.J.1
Ryjenkov, D.A.2
Gomelsky, M.3
-
60
-
-
80051788487
-
Coupling between the BLUF and EAL domains in the blue light-regulated phosphodiesterase BlrP1
-
Khrenova M, Domratcheva T, Grigorenko B, Nemukhin A (2011) Coupling between the BLUF and EAL domains in the blue light-regulated phosphodiesterase BlrP1. J Mol Model 17:1579-1586.
-
(2011)
J Mol Model
, vol.17
, pp. 1579-1586
-
-
Khrenova, M.1
Domratcheva, T.2
Grigorenko, B.3
Nemukhin, A.4
-
61
-
-
84861918212
-
A full length bifunctional protein involved in c-di-GMP turnover is required for long term survival under nutrient starvation in Mycobacterium smegmatis
-
Epub ahead of print
-
Bharati BK, Sharma IM, Kasetty S, Kumar M, Mukherjee R, Chatterji D (2012) A full length bifunctional protein involved in c-di-GMP turnover is required for long term survival under nutrient starvation in Mycobacterium smegmatis. Microbiology [Epub ahead of print].
-
(2012)
Microbiology
-
-
Bharati, B.K.1
Sharma, I.M.2
Kasetty, S.3
Kumar, M.4
Mukherjee, R.5
Chatterji, D.6
-
62
-
-
80052419746
-
The atypical two-component sensor kinase Lpl0330 from Legionella pneumophila controls the bifunctional diguanylate cyclase-phosphodiesterase Lpl0329 to modulate bis-(30 -50) -cyclic dimeric GMPsynthesis
-
Levet-Paulo M, Lazzaroni JC, Gilbert C, Atlan D, Doublet P, Vianney A (2011) The atypical two-component sensor kinase Lpl0330 from Legionella pneumophila controls the bifunctional diguanylate cyclase-phosphodiesterase Lpl0329 to modulate bis-(30 -50) -cyclic dimeric GMPsynthesis. J Biol Chem 286:31136-31144.
-
(2011)
J Biol Chem
, vol.286
, pp. 31136-31144
-
-
Levet-Paulo, M.1
Lazzaroni, J.C.2
Gilbert, C.3
Atlan, D.4
Doublet, P.5
Vianney, A.6
-
63
-
-
84863229664
-
Nitric oxide regulation of cyclic di-GMP synthesis and hydrolysis in Shewanella woodyi
-
Liu N, Xu Y, Hossain S, Huang N, Coursolle D, Gralnick JA, Boon EM (2012) Nitric oxide regulation of cyclic di-GMP synthesis and hydrolysis in Shewanella woodyi. Biochemistry 51:2087-2099.
-
(2012)
Biochemistry
, vol.51
, pp. 2087-2099
-
-
Liu, N.1
Xu, Y.2
Hossain, S.3
Huang, N.4
Coursolle, D.5
Gralnick, J.A.6
Boon, E.M.7
-
64
-
-
0034537739
-
A two-component system involving an HD-GYP domain protein links cell-cell signalling to pathogenicity gene expression in Xanthomonas campestris
-
DOI 10.1046/j.1365-2958.2000.02196.x
-
Slater H, Alvarez-Morales A, Barber CE, Daniels MJ, Dow JM (2000) A two-component system involving an HD-GYP domain protein links cell-cell signalling to pathogenicity gene expression in Xanthomonas campestris. Mol Microbiol 38:986-1003. (Pubitemid 32009674)
-
(2000)
Molecular Microbiology
, vol.38
, Issue.5
, pp. 986-1003
-
-
Slater, H.1
Alvarez-Morales, A.2
Barber, C.E.3
Daniels, M.J.4
Maxwell, D.J.5
-
65
-
-
78249278151
-
Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris
-
Ryan RP, Dow JM (2010) Intermolecular interactions between HD-GYP and GGDEF domain proteins mediate virulence-related signal transduction in Xanthomonas campestris. Virulence 1:404-408.
-
(2010)
Virulence
, vol.1
, pp. 404-408
-
-
Ryan, R.P.1
Dow, J.M.2
-
66
-
-
0034721950
-
Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli
-
Ko M, Park C (2000) Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli. J Mol Biol 303:371-382.
-
(2000)
J Mol Biol
, vol.303
, pp. 371-382
-
-
Ko, M.1
Park, C.2
-
67
-
-
0021824058
-
An unusual guanyl oligonucleotide regulates cellulose synthesis in Acetobacter xylinum
-
DOI 10.1016/0014-5793(85)80706-7
-
Ross P, Aloni Y, Weinhouse C, Michaeli D, Weinberger-Ohana P, Meyer R, Benziman M (1985) An unusual guanyl oligonucleotide regulates cellulose synthesis in Acetobacter xylinum. FEBS Lett 186:191-196. (Pubitemid 15070303)
-
(1985)
FEBS Letters
, vol.186
, Issue.2
, pp. 191-196
-
-
Ross, P.1
Aloni, Y.2
Weinhouse, C.3
-
68
-
-
79251540863
-
Structural characterization reveals that a PilZ domain protein undergoes substantial conformational change upon binding to cyclic dimeric guanosine monophosphate
-
Shin JS, Ryu KS, Ko J, Lee A, Choi BS (2011) Structural characterization reveals that a PilZ domain protein undergoes substantial conformational change upon binding to cyclic dimeric guanosine monophosphate. Protein Sci 20:270-277.
-
(2011)
Protein Sci
, vol.20
, pp. 270-277
-
-
Shin, J.S.1
Ryu, K.S.2
Ko, J.3
Lee, A.4
Choi, B.S.5
-
69
-
-
77953244382
-
Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division
-
Christen M, Kulasekara HD, Christen B, Kulasekara BR, Hoffman LR, Miller SI (2010) Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division. Science 328:1295-1297.
-
(2010)
Science
, vol.328
, pp. 1295-1297
-
-
Christen, M.1
Kulasekara, H.D.2
Christen, B.3
Kulasekara, B.R.4
Hoffman, L.R.5
Miller, S.I.6
-
70
-
-
34250885891
-
An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins
-
DOI 10.1110/ps.072845607
-
Ohashi T, Galiacy SD, Briscoe G, Erickson HP (2007) An experimental study of GFP-based FRET, with application to intrinsically unstructured proteins. Protein Sci 16:1429-1438. (Pubitemid 46984877)
-
(2007)
Protein Science
, vol.16
, Issue.7
, pp. 1429-1438
-
-
Ohashi, T.1
Galiacy, S.D.2
Briscoe, G.3
Erickson, H.P.4
-
71
-
-
0030042096
-
Identification of a novel gene, pilZ, essential for type 4 fimbrial biogenesis in Pseudomonas aeruginosa
-
Alm RA, Bodero AJ, Free PD, Mattick JS (1996) Identification of a novel gene, pilZ, essential for type 4 fimbrial biogenesis in Pseudomonas aeruginosa. J Bacteriol 178:46-53. (Pubitemid 26006064)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.1
, pp. 46-53
-
-
Alm, R.A.1
Bodero, A.J.2
Free, P.D.3
Mattick, J.S.4
-
72
-
-
70349968208
-
PILZ protein structure and interactions with PILB and the FIMX EAL domain: Implications for control of type IV pilus biogenesis
-
Guzzo CR, Salinas RK, Andrade MO, Farah CS (2009) PILZ protein structure and interactions with PILB and the FIMX EAL domain: implications for control of type IV pilus biogenesis. J Mol Biol 393:848-866.
-
(2009)
J Mol Biol
, vol.393
, pp. 848-866
-
-
Guzzo, C.R.1
Salinas, R.K.2
Andrade, M.O.3
Farah, C.S.4
-
73
-
-
66149087307
-
XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch
-
Li TN, Chin KH, Liu JH, Wang AH, Chou SH (2009) XC1028 from Xanthomonas campestris adopts a PilZ domain-like structure without a c-di-GMP switch. Proteins 75:282-288.
-
(2009)
Proteins
, vol.75
, pp. 282-288
-
-
Li, T.N.1
Chin, K.H.2
Liu, J.H.3
Wang, A.H.4
Chou, S.H.5
-
74
-
-
0345097587
-
FimX, a Multidomain Protein Connecting Environmental Signals to Twitching Motility in Pseudomonas aeruginosa
-
DOI 10.1128/JB.185.24.7068-7076.2003
-
Huang B, Whitchurch CB, Mattick JS (2003) FimX, a multidomain protein connecting environmental signals to twitching motility in Pseudomonas aeruginosa. J Bacteriol 185:7068-7076. (Pubitemid 37509821)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.24
, pp. 7068-7076
-
-
Huang, B.1
Whitchurch, C.B.2
Mattick, J.S.3
-
75
-
-
33646397872
-
Analysis of FimX, a phosphodiesterase that governs twitching motility in Pseudomonas aeruginosa
-
Kazmierczak BI, Lebron MB, Murray TS (2006) Analysis of FimX, a phosphodiesterase that governs twitching motility in Pseudomonas aeruginosa. Mol Microbiol 60:1026-1043.
-
(2006)
Mol Microbiol
, vol.60
, pp. 1026-1043
-
-
Kazmierczak, B.I.1
Lebron, M.B.2
Murray, T.S.3
-
76
-
-
68149169919
-
Catalytically incompetent by design
-
Gao R, Stock AM (2009) Catalytically incompetent by design. Structure 17:1038-1040.
-
(2009)
Structure
, vol.17
, pp. 1038-1040
-
-
Gao, R.1
Stock, A.M.2
-
77
-
-
78951471881
-
Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change
-
Qi Y, Chuah ML, Dong X, Xie K, Luo Z, Tang K, Liang ZX (2011) Binding of cyclic diguanylate in the non-catalytic EAL domain of FimX induces a long-range conformational change. J Biol Chem 286:2910-2917.
-
(2011)
J Biol Chem
, vol.286
, pp. 2910-2917
-
-
Qi, Y.1
Chuah, M.L.2
Dong, X.3
Xie, K.4
Luo, Z.5
Tang, K.6
Liang, Z.X.7
-
78
-
-
33646795317
-
Biofilm formation by Pseudomonas fluorescens WCS365: A role for LapD
-
Hinsa SM, O'Toole GA (2006) Biofilm formation by Pseudomonas fluorescens WCS365: a role for LapD. Microbiology 152:1375-1383.
-
(2006)
Microbiology
, vol.152
, pp. 1375-1383
-
-
Hinsa, S.M.1
O'Toole, G.A.2
-
79
-
-
79952266181
-
A c-di-GMP effector system controls cell adhesion by inside-out signaling and surface protein cleavage
-
Newell PD, Boyd CD, Sondermann H, O'Toole GA (2011) A c-di-GMP effector system controls cell adhesion by inside-out signaling and surface protein cleavage. PLoS Biol 9:e1000587.
-
(2011)
PLoS Biol
, vol.9
-
-
Newell, P.D.1
Boyd, C.D.2
Sondermann, H.3
O'Toole, G.A.4
-
80
-
-
80052519940
-
Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1
-
Newell PD, Yoshioka S, Hvorecny KL, Monds RD, O'Toole GA (2011) Systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1. J Bacteriol 193:4685-4698.
-
(2011)
J Bacteriol
, vol.193
, pp. 4685-4698
-
-
Newell, P.D.1
Yoshioka, S.2
Hvorecny, K.L.3
Monds, R.D.4
O'Toole, G.A.5
-
81
-
-
33846320476
-
Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA
-
DOI 10.1111/j.1365-2958.2006.05539.x
-
Monds RD, Newell PD, Gross RH, O'Toole GA (2007) Phosphate-dependent modulation of c-di-GMP levels regulates Pseudomonas fluorescens Pf0-1 biofilm formation by controlling secretion of the adhesin LapA. Mol Microbiol 63:656-679. (Pubitemid 46115966)
-
(2007)
Molecular Microbiology
, vol.63
, Issue.3
, pp. 656-679
-
-
Monds, R.D.1
Newell, P.D.2
Gross, R.H.3
O'Toole, G.A.4
-
82
-
-
84862777062
-
The orphan histidine protein kinase SgmT is a c-di-GMP receptor and regulates composition of the extracellular matrix together with the orphan DNA binding response regulator DigR in Myxococcus xanthus
-
Petters T, Zhang X, Nesper J, Treuner-Lange A, Gomez-Santos N, Hoppert M, Jenal U, Sogaard-Andersen L (2012) The orphan histidine protein kinase SgmT is a c-di-GMP receptor and regulates composition of the extracellular matrix together with the orphan DNA binding response regulator DigR in Myxococcus xanthus. Mol Microbiol 84:147-165.
-
(2012)
Mol Microbiol
, vol.84
, pp. 147-165
-
-
Petters, T.1
Zhang, X.2
Nesper, J.3
Treuner-Lange, A.4
Gomez-Santos, N.5
Hoppert, M.6
Jenal, U.7
Sogaard-Andersen, L.8
-
83
-
-
79953175979
-
Indirect modulation of the intracellular c-Di-GMP level in Shewanella oneidensis MR-1 by MxdA
-
Rakshe S, Leff M, Spormann AM (2011) Indirect modulation of the intracellular c-Di-GMP level in Shewanella oneidensis MR-1 by MxdA. Appl Environ Microbiol 77:2196-2198.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 2196-2198
-
-
Rakshe, S.1
Leff, M.2
Spormann, A.M.3
-
84
-
-
58149485506
-
Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression
-
Duerig A, Abel S, Folcher M, Nicollier M, Schwede T, Amiot N, Giese B, Jenal U (2009) Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes Dev 23:93-104.
-
(2009)
Genes Dev
, vol.23
, pp. 93-104
-
-
Duerig, A.1
Abel, S.2
Folcher, M.3
Nicollier, M.4
Schwede, T.5
Amiot, N.6
Giese, B.7
Jenal, U.8
-
85
-
-
1342325445
-
VpsT Is A Transcriptional Regulator Required for Expression of vps Biosynthesis Genes and the Development of Rugose Colonial Morphology in Vibrio cholerae O1 El Tor
-
DOI 10.1128/JB.186.5.1574-1578.2004
-
Casper-Lindley C, Yildiz FH (2004) VpsT is a transcriptional regulator required for expression of vps biosynthesis genes and the development of rugose colonial morphology in Vibrio cholerae O1 El Tor. J Bacteriol 186:1574-1578. (Pubitemid 38248749)
-
(2004)
Journal of Bacteriology
, vol.186
, Issue.5
, pp. 1574-1578
-
-
Casper-Lindley, C.1
Yildiz, F.H.2
-
86
-
-
77955630859
-
An allosteric self-splicing ribozyme triggered by a bacterial second messenger
-
Lee ER, Baker JL, Weinberg Z, Sudarsan N, Breaker RR (2010) An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science 329:845-848.
-
(2010)
Science
, vol.329
, pp. 845-848
-
-
Lee, E.R.1
Baker, J.L.2
Weinberg, Z.3
Sudarsan, N.4
Breaker, R.R.5
-
87
-
-
75749117906
-
The cyclic nucleotide monophosphate domain of Xanthomonas campestris global regulator Clp defines a new class of cyclic di-GMP effectors
-
Tao F, He YW, Wu DH, Swarup S, Zhang LH (2010) The cyclic nucleotide monophosphate domain of Xanthomonas campestris global regulator Clp defines a new class of cyclic di-GMP effectors. J Bacteriol 192:1020-1029.
-
(2010)
J Bacteriol
, vol.192
, pp. 1020-1029
-
-
Tao, F.1
He, Y.W.2
Wu, D.H.3
Swarup, S.4
Zhang, L.H.5
-
88
-
-
80052315142
-
MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression
-
Wilksch JJ, Yang J, Clements A, Gabbe JL, Short KR, Cao H, Cavaliere R, James CE, Whitchurch CB, Schembri MA, Chuah ML, Liang ZX, Wijburg OL, Jenney AW, Lithgow T, Strugnell RA (2011) MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression. PLoS Pathog 7:e1002204.
-
(2011)
PLoS Pathog
, vol.7
-
-
Wilksch, J.J.1
Yang, J.2
Clements, A.3
Gabbe, J.L.4
Short, K.R.5
Cao, H.6
Cavaliere, R.7
James, C.E.8
Whitchurch, C.B.9
Schembri, M.A.10
Chuah, M.L.11
Liang, Z.X.12
Wijburg, O.L.13
Jenney, A.W.14
Lithgow, T.15
Strugnell, R.A.16
-
89
-
-
33846616323
-
Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway
-
DOI 10.1111/j.1365-2958.2006.05568.x
-
Beyhan S, Yildiz FH (2007) Smooth to rugose phase variation in Vibrio cholerae can be mediated by a single nucleotide change that targets c-di-GMP signalling pathway. Mol Microbiol 63:995-1007. (Pubitemid 46184510)
-
(2007)
Molecular Microbiology
, vol.63
, Issue.4
, pp. 995-1007
-
-
Beyhan, S.1
Yildiz, F.H.2
-
90
-
-
80655125443
-
Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae
-
Srivastava D, Harris RC, Waters CM (2011) Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae. J Bacteriol 193:6331-6341.
-
(2011)
J Bacteriol
, vol.193
, pp. 6331-6341
-
-
Srivastava, D.1
Harris, R.C.2
Waters, C.M.3
-
91
-
-
0033573063
-
Conformational changes induced by phosphorylation of the FixJ receiver domain
-
DOI 10.1016/S0969-2126(00)88341-0
-
Birck C, Mourey L, Gouet P, Fabry B, Schumacher J, Rousseau P, Kahn D, Samama JP (1999) Conformational changes induced by phosphorylation of the FixJ receiver domain. Structure 7:1505-1515. (Pubitemid 30007236)
-
(1999)
Structure
, vol.7
, Issue.12
, pp. 1505-1515
-
-
Birck, C.1
Mourey, L.2
Gouet, P.3
Fabry, B.4
Schumacher, J.5
Rousseau, P.6
Kahn, D.7
Samama, J.-P.8
-
92
-
-
57749182194
-
The HupR receiver domain crystal structure in its nonphospho and inhibitory phospho states
-
Davies KM, Lowe ED, Venien-Bryan C, Johnson LN (2009) The HupR receiver domain crystal structure in its nonphospho and inhibitory phospho states. J Mol Biol 385:51-64.
-
(2009)
J Mol Biol
, vol.385
, pp. 51-64
-
-
Davies, K.M.1
Lowe, E.D.2
Venien-Bryan, C.3
Johnson, L.N.4
-
93
-
-
18144411635
-
Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: A symmetric dimer mediated by the alpha4-beta5-alpha5 face
-
DOI 10.1016/j.jmb.2005.03.059, PII S0022283605003505
-
Toro-Roman A, Mack TR, Stock AM (2005) Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: a symmetric dimer mediated by the alpha4-beta5-alpha5 face. J Mol Biol 349:11-26. (Pubitemid 40616445)
-
(2005)
Journal of Molecular Biology
, vol.349
, Issue.1
, pp. 11-26
-
-
Toro-Roman, A.1
MacK, T.R.2
Stock, A.M.3
-
94
-
-
3042773988
-
Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators
-
DOI 10.1529/biophysj.103.033696
-
Benda C, Scheufler C, Tandeau de Marsac N, Gartner W (2004) Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators. Biophys J 87:476-487. (Pubitemid 38880101)
-
(2004)
Biophysical Journal
, vol.87
, Issue.1
, pp. 476-487
-
-
Benda, C.1
Scheufler, C.2
De Marsac, N.T.3
Gartner, W.4
-
95
-
-
77949887724
-
Molecular strategies for phosphorylation-mediated regulation of response regulator activity
-
Gao R, Stock AM (2010) Molecular strategies for phosphorylation-mediated regulation of response regulator activity. Curr Opin Microbiol 13:160-167.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 160-167
-
-
Gao, R.1
Stock, A.M.2
-
96
-
-
0026522733
-
DNA looping
-
Matthews KS (1992) DNA looping. Microbiol Rev 56:123-136.
-
(1992)
Microbiol Rev
, vol.56
, pp. 123-136
-
-
Matthews, K.S.1
-
97
-
-
0026624977
-
DNA looping
-
Schleif R (1992) DNA looping. Annu Rev Biochem 61:199-223.
-
(1992)
Annu Rev Biochem
, vol.61
, pp. 199-223
-
-
Schleif, R.1
-
98
-
-
33645819810
-
Hierarchical involvement of various GGDEF domain proteins in rdar morphotype development of Salmonella enterica serovar Typhimurium
-
Kader A, Simm R, Gerstel U, Morr M, Romling U (2006) Hierarchical involvement of various GGDEF domain proteins in rdar morphotype development of Salmonella enterica serovar Typhimurium. Mol Microbiol 60:602-616.
-
(2006)
Mol Microbiol
, vol.60
, pp. 602-616
-
-
Kader, A.1
Simm, R.2
Gerstel, U.3
Morr, M.4
Romling, U.5
-
99
-
-
21144439731
-
Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae
-
Romling U (2005) Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae. Cell Mol Life Sci 62:1234-1246.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 1234-1246
-
-
Romling, U.1
-
100
-
-
0037292077
-
CsgD, a regulator of curli and cellulose synthesis, also regulates serine hydroxymethyltransferase synthesis in Escherichia coli K-12
-
DOI 10.1099/mic.0.25841-0
-
Chirwa NT, Herrington MB (2003) CsgD, a regulator of curli and cellulose synthesis, also regulates serine hydroxymethyltransferase synthesis in Escherichia coli K-12. Microbiology 149:525-535. (Pubitemid 36285209)
-
(2003)
Microbiology
, vol.149
, Issue.2
, pp. 525-535
-
-
Chirwa, N.T.1
Herrington, M.B.2
-
101
-
-
77954855585
-
Unphosphorylated CsgD controls biofilm formation in Salmonella enterica serovar Typhimurium
-
Zakikhany K, Harrington CR, Nimtz M, Hinton JC, Romling U (2010) Unphosphorylated CsgD controls biofilm formation in Salmonella enterica serovar Typhimurium. Mol Microbiol 77:771-786.
-
(2010)
Mol Microbiol
, vol.77
, pp. 771-786
-
-
Zakikhany, K.1
Harrington, C.R.2
Nimtz, M.3
Hinton, J.C.4
Romling, U.5
-
102
-
-
0035114220
-
ETr-associated phenotypes in Vibrio cholerae O1 El tor
-
DOI 10.1128/JB.183.5.1716-1726.2001
-
Yildiz FH, Dolganov NA, Schoolnik GK (2001) VpsR, a member of the response regulators of the two-component regulatory systems, is required for expression of vps biosynthesis genes and EPS(ETr)-associated phenotypes in Vibrio cholerae O1 El Tor. J Bacteriol 183:1716-1726. (Pubitemid 32172315)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.5
, pp. 1716-1726
-
-
Yildiz, F.H.1
Dolganov, N.A.2
Schoolnik, G.K.3
-
103
-
-
0034748979
-
Interaction of the antiactivator FleN with the transcriptional activator FleQ regulates flagellar number in pseudomonas aeruginosa
-
DOI 10.1128/JB.183.22.6636-6644.2001
-
Dasgupta N, Ramphal R (2001) Interaction of the antiactivator FleN with the transcriptional activator FleQ regulates flagellar number in Pseudomonas aeruginosa. J Bacteriol 183:6636-6644. (Pubitemid 33026755)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.22
, pp. 6636-6644
-
-
Dasgupta, N.1
Ramphal, R.2
-
104
-
-
0030924138
-
A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner
-
Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R (1997) A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner. J Bacteriol 179:5574-5581. (Pubitemid 27387630)
-
(1997)
Journal of Bacteriology
, vol.179
, Issue.17
, pp. 5574-5581
-
-
Arora, S.K.1
Ritchings, B.W.2
Almira, E.C.3
Lory, S.4
Ramphal, R.5
-
105
-
-
80053932725
-
The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia
-
Fazli M, O'Connell A, Nilsson M, Niehaus K, Dow JM, Givskov M, Ryan RP, Tolker-Nielsen T (2011) The CRP/FNR family protein Bcam1349 is a c-di-GMP effector that regulates biofilm formation in the respiratory pathogen Burkholderia cenocepacia. Mol Microbiol 82:327-341.
-
(2011)
Mol Microbiol
, vol.82
, pp. 327-341
-
-
Fazli, M.1
O'Connell, A.2
Nilsson, M.3
Niehaus, K.4
Dow, J.M.5
Givskov, M.6
Ryan, R.P.7
Tolker-Nielsen, T.8
-
106
-
-
34247372720
-
Xanthomonas campestris cell-cell communication involves a putative nucleotide receptor protein Clp and a hierarchical signalling network
-
DOI 10.1111/j.1365-2958.2007.05670.x
-
He YW, Ng AY, Xu M, Lin K, Wang LH, Dong YH, Zhang LH (2007) Xanthomonas campestris cell-cell communication involves a putative nucleotide receptor protein Clp and a hierarchical signalling network. Mol Microbiol 64:281-292. (Pubitemid 46632629)
-
(2007)
Molecular Microbiology
, vol.64
, Issue.2
, pp. 281-292
-
-
He, Y.-W.1
Ng, A.Y.-J.2
Xu, M.3
Lin, K.4
Wang, L.-H.5
Dong, Y.-H.6
Zhang, L.-H.7
-
107
-
-
62449135056
-
Co-regulation of Xanthomonas campestris virulence by quorum sensing and a novel two-component regulatory system RavS/RavR
-
He YW, Boon C, Zhou L, Zhang LH (2009) Co-regulation of Xanthomonas campestris virulence by quorum sensing and a novel two-component regulatory system RavS/RavR. Mol Microbiol 71:1464-1476.
-
(2009)
Mol Microbiol
, vol.71
, pp. 1464-1476
-
-
He, Y.W.1
Boon, C.2
Zhou, L.3
Zhang, L.H.4
-
109
-
-
0025123205
-
A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity
-
de Crecy-Lagard V, Glaser P, Lejeune P, Sismeiro O, Barber CE, Daniels MJ, Danchin A (1990) A Xanthomonas campestris pv. campestris protein similar to catabolite activation factor is involved in regulation of phytopathogenicity. J Bacteriol 172:5877-5883. (Pubitemid 20317127)
-
(1990)
Journal of Bacteriology
, vol.172
, Issue.10
, pp. 5877-5883
-
-
De Crecy-Lagard, V.1
Glaser, P.2
Lejeune, P.3
Sismeiro, O.4
Barber, C.E.5
Daniels, M.J.6
Danchin, A.7
-
110
-
-
78249283534
-
A novel C-di-GMP effector linking intracellular virulence regulon to quorum sensing and hypoxia sensing
-
Zhang LH (2010) A novel C-di-GMP effector linking intracellular virulence regulon to quorum sensing and hypoxia sensing. Virulence 1:391-394.
-
(2010)
Virulence
, vol.1
, pp. 391-394
-
-
Zhang, L.H.1
-
111
-
-
0026722419
-
Allosteric changes in the cAMP receptor protein of Escherichia coli: Hinge reorientation
-
Kim J, Adhya S, Garges S (1992) Allosteric changes in the cAMP receptor protein of Escherichia coli: hinge reorientation. Proc Natl Acad Sci USA 89:9700-9704.
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 9700-9704
-
-
Kim, J.1
Adhya, S.2
Garges, S.3
-
112
-
-
79953178284
-
Interactions of the c-di-GMP riboswitch with its second messenger ligand
-
Smith KD, Strobel SA (2011) Interactions of the c-di-GMP riboswitch with its second messenger ligand. Biochem Soc Trans 39:647-651.
-
(2011)
Biochem Soc Trans
, vol.39
, pp. 647-651
-
-
Smith, K.D.1
Strobel, S.A.2
-
113
-
-
79952735655
-
Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing
-
Tuckerman JR, Gonzalez G, Gilles-Gonzalez MA (2011) Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing. J Mol Biol 407:633-639.
-
(2011)
J Mol Biol
, vol.407
, pp. 633-639
-
-
Tuckerman, J.R.1
Gonzalez, G.2
Gilles-Gonzalez, M.A.3
-
114
-
-
13844256891
-
3′,5′-Cyclic diguanylic acid (c-di-GMP) inhibits basal and growth factor-stimulated human colon cancer cell proliferation
-
DOI 10.1016/j.bbrc.2005.01.093
-
Karaolis DK, Cheng K, Lipsky M, Elnabawi A, Catalano J, Hyodo M, Hayakawa Y, Raufman JP (2005) 3′,5′-Cyclic diguanylic acid (c-di-GMP) inhibits basal and growth factor-stimulated human colon cancer cell proliferation. Biochem Biophys Res Commun 329:40-45. (Pubitemid 40255417)
-
(2005)
Biochemical and Biophysical Research Communications
, vol.329
, Issue.1
, pp. 40-45
-
-
Karaolis, D.K.R.1
Cheng, K.2
Lipsky, M.3
Elnabawi, A.4
Catalano, J.5
Hyodo, M.6
Hayakawa, Y.7
Raufman, J.-P.8
-
115
-
-
34848901383
-
Cyclic di-GMP stimulates protective innate immunity in bacterial pneumonia
-
DOI 10.1128/IAI.01762-06
-
Karaolis DK, Newstead MW, Zeng X, Hyodo M, Hayakawa Y, Bhan U, Liang H, Standiford TJ (2007) Cyclic di-GMP stimulates protective innate immunity in bacterial pneumonia. Infect Immun 75:4942-4950. (Pubitemid 47502166)
-
(2007)
Infection and Immunity
, vol.75
, Issue.10
, pp. 4942-4950
-
-
Karaolis, D.K.R.1
Newstead, M.W.2
Zeng, X.3
Hyodo, M.4
Hayakawa, Y.5
Bhan, U.6
Liang, H.7
Standiford, T.J.8
-
116
-
-
33846916451
-
Bacterial c-di-GMP is an immunostimulatory molecule
-
Karaolis DK, Means TK, Yang D, Takahashi M, Yoshimura T, Muraille E, Philpott D, Schroeder JT, Hyodo M, Hayakawa Y, Talbot BG, Brouillette E, Malouin F (2007) Bacterial c-di-GMP is an immunostimulatory molecule. J Immunol 178:2171-2181. (Pubitemid 46233415)
-
(2007)
Journal of Immunology
, vol.178
, Issue.4
, pp. 2171-2181
-
-
Karaolis, D.K.R.1
Means, T.K.2
Yang, D.3
Takahashi, M.4
Yoshimura, T.5
Muraille, E.6
Philpott, D.7
Schroeder, J.T.8
Hyodo, M.9
Hayakawa, Y.10
Talbot, B.G.11
Brouillette, E.12
Malouin, F.13
-
117
-
-
79959792793
-
Intranasal c-di-GMP-adjuvanted plant-derived H5 influenza vaccine induces multifunctional Th1 CD4+ cells and strong mucosal and systemic antibody responses in mice
-
Madhun AS, Haaheim LR, Nostbakken JK, Ebensen T, Chichester J, Yusibov V, Guzman CA, Cox RJ (2011) Intranasal c-di-GMP-adjuvanted plant-derived H5 influenza vaccine induces multifunctional Th1 CD4+ cells and strong mucosal and systemic antibody responses in mice. Vaccine 29:4973-4982.
-
(2011)
Vaccine
, vol.29
, pp. 4973-4982
-
-
Madhun, A.S.1
Haaheim, L.R.2
Nostbakken, J.K.3
Ebensen, T.4
Chichester, J.5
Yusibov, V.6
Guzman, C.A.7
Cox, R.J.8
-
118
-
-
67651125824
-
A host type I interferon response is induced by cytosolic sensing of the bacterial second messenger cyclic-di-GMP
-
McWhirter SM, Barbalat R, Monroe KM, Fontana MF, Hyodo M, Joncker NT, Ishii KJ, Akira S, Colonna M, Chen ZJ, Fitzgerald KA, Hayakawa Y, Vance RE (2009) A host type I interferon response is induced by cytosolic sensing of the bacterial second messenger cyclic-di-GMP. J Exp Med 206:1899-1911.
-
(2009)
J Exp Med
, vol.206
, pp. 1899-1911
-
-
McWhirter, S.M.1
Barbalat, R.2
Monroe, K.M.3
Fontana, M.F.4
Hyodo, M.5
Joncker, N.T.6
Ishii, K.J.7
Akira, S.8
Colonna, M.9
Chen, Z.J.10
Fitzgerald, K.A.11
Hayakawa, Y.12
Vance, R.E.13
-
119
-
-
77954070545
-
c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response
-
Woodward JJ, Iavarone AT, Portnoy DA (2010) c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response. Science 328:1703-1705.
-
(2010)
Science
, vol.328
, pp. 1703-1705
-
-
Woodward, J.J.1
Iavarone, A.T.2
Portnoy, D.A.3
-
120
-
-
80054966913
-
STING is a direct innate immune sensor of cyclic di-GMP
-
Burdette DL, Monroe KM, Sotelo-Troha K, Iwig JS, Eckert B, Hyodo M, Hayakawa Y, Vance RE (2011) STING is a direct innate immune sensor of cyclic di-GMP. Nature 478:515-518.
-
(2011)
Nature
, vol.478
, pp. 515-518
-
-
Burdette, D.L.1
Monroe, K.M.2
Sotelo-Troha, K.3
Iwig, J.S.4
Eckert, B.5
Hyodo, M.6
Hayakawa, Y.7
Vance, R.E.8
-
121
-
-
79251506939
-
The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides
-
Sauer JD, Sotelo-Troha K, von Moltke J, Monroe KM, Rae CS, Brubaker SW, Hyodo M, Hayakawa Y, Woodward JJ, Portnoy DA, Vance RE (2011) The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides. Infect Immun 79:688-694.
-
(2011)
Infect Immun
, vol.79
, pp. 688-694
-
-
Sauer, J.D.1
Sotelo-Troha, K.2
Von Moltke, J.3
Monroe, K.M.4
Rae, C.S.5
Brubaker, S.W.6
Hyodo, M.7
Hayakawa, Y.8
Woodward, J.J.9
Portnoy, D.A.10
Vance, R.E.11
-
122
-
-
48249144754
-
Listeria monocytogenes multidrug resistance transporters activate a cytosolic surveillance pathway of innate immunity
-
Crimmins GT, Herskovits AA, Rehder K, Sivick KE, Lauer P, Dubensky TW, Jr, Portnoy DA (2008) Listeria monocytogenes multidrug resistance transporters activate a cytosolic surveillance pathway of innate immunity. Proc Natl Acad Sci USA 105:10191-10196.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 10191-10196
-
-
Crimmins, G.T.1
Herskovits, A.A.2
Rehder, K.3
Sivick, K.E.4
Lauer, P.5
Dubensky Jr., T.W.6
Portnoy, D.A.7
-
123
-
-
0028810683
-
The novel cyclic dinucleotide 3′-5′ cyclic diguanylic acid binds to p21ras and enhances DNA synthesis but not cell replication in the Molt 4 cell line
-
Amikam D, Steinberger O, Shkolnik T, Ben-Ishai Z (1995) The novel cyclic dinucleotide 3′-5′ cyclic diguanylic acid binds to p21ras and enhances DNA synthesis but not cell replication in the Molt 4 cell line. Biochem J 311:921-927.
-
(1995)
Biochem J
, vol.311
, pp. 921-927
-
-
Amikam, D.1
Steinberger, O.2
Shkolnik, T.3
Ben-Ishai, Z.4
-
124
-
-
84862908893
-
The overlapping host responses to bacterial cyclic dinucleotides
-
Abdul-Sater AA, Grajkowski A, Erdjument-Bromage H, Plumlee C, Levi A, Schreiber MT, Lee C, Shuman H, Beaucage SL, Schindler C (2012) The overlapping host responses to bacterial cyclic dinucleotides. Microbes Infect 14:188-197.
-
(2012)
Microbes Infect
, vol.14
, pp. 188-197
-
-
Abdul-Sater, A.A.1
Grajkowski, A.2
Erdjument-Bromage, H.3
Plumlee, C.4
Levi, A.5
Schreiber, M.T.6
Lee, C.7
Shuman, H.8
Beaucage, S.L.9
Schindler, C.10
|