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Volumn 368, Issue 1632, 2013, Pages

Enhancer turnover and conserved regulatory function in vertebrate evolution

Author keywords

Comparative genomics; Hypothalamus; Mammals; Proopiomelanocortin; Teleosts; Transgenic zebrafish

Indexed keywords

CYPRINID; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; HORMONE; MAMMAL; MUTATION; NEUROLOGY; TURNOVER;

EID: 84887418594     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2013.0027     Document Type: Article
Times cited : (33)

References (93)
  • 1
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: A genetic theory of morphological evolution
    • (doi:10. 1016/j.cell.2008.06.030)
    • Carroll SB. 2008 Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134, 25-36. (doi:10. 1016/j.cell.2008.06.030)
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 2
    • 0032498230 scopus 로고    scopus 로고
    • The enhanceosome and transcriptional synergy
    • (doi:10.1016/ S0092-8674(00)80893-4)
    • Carey M. 1998 The enhanceosome and transcriptional synergy. Cell 92, 5-8. (doi:10.1016/ S0092-8674(00)80893-4)
    • (1998) Cell , vol.92 , pp. 5-8
    • Carey, M.1
  • 3
    • 77950580571 scopus 로고    scopus 로고
    • Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer
    • (doi:10.1016/j. devcel.2009.12.026)
    • Swanson CI, Evans NC, Barolo S. 2010 Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer. Dev. Cell 18, 359-370. (doi:10.1016/j. devcel.2009.12.026)
    • (2010) Dev. Cell , vol.18 , pp. 359-370
    • Swanson, C.I.1    Evans, N.C.2    Barolo, S.3
  • 4
    • 0036889175 scopus 로고    scopus 로고
    • Functional evolution of noncoding DNA
    • (doi:10. 1016/S0959-437X(02)00355-6)
    • Ludwig MZ. 2002 Functional evolution of noncoding DNA. Curr. Opin. Genet. Dev. 12, 634-639. (doi:10. 1016/S0959-437X(02)00355-6)
    • (2002) Curr. Opin. Genet. Dev , vol.12 , pp. 634-639
    • Ludwig, M.Z.1
  • 5
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts for long-range enhancers
    • (doi:10.1126/ science.1088328)
    • Nobrega MA, Ovcharenko I, Afzal V, Rubin EM. 2003 Scanning human gene deserts for long-range enhancers. Science 302, 413. (doi:10.1126/ science.1088328)
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 6
    • 0042810698 scopus 로고    scopus 로고
    • A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
    • (doi:10.1093/ hmg/ddg180)
    • Lettice LA et al. 2003 A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly. Hum. Mol. Genet. 12, 1725-1735. (doi:10.1093/ hmg/ddg180)
    • (2003) Hum. Mol. Genet , vol.12 , pp. 1725-1735
    • Lettice, L.A.1
  • 7
    • 14844341770 scopus 로고    scopus 로고
    • Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb
    • (doi:10.1242/ dev.01613)
    • Sagai T, Hosoya M, Mizushina Y, Tamura M, Shiroishi T. 2005 Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb. Development 132, 797-803. (doi:10.1242/ dev.01613)
    • (2005) Development , vol.132 , pp. 797-803
    • Sagai, T.1    Hosoya, M.2    Mizushina, Y.3    Tamura, M.4    Shiroishi, T.5
  • 8
    • 84870512646 scopus 로고    scopus 로고
    • Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints
    • (doi:10.1101/gr.139725.112)
    • Irimia M et al. 2012 Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints. Genome Res. 22, 2356-2367. (doi:10.1101/gr.139725.112)
    • (2012) Genome Res , vol.22 , pp. 2356-2367
    • Irimia, M.1
  • 9
    • 84875249885 scopus 로고    scopus 로고
    • An integrated holo-enhancer unit defines tissue and gene specificity of the fgf8 regulatory landscape
    • (doi:10.1016/j.devcel. 2013.01.025)
    • Marinic M, Aktas T, Ruf S, Spitz F. 2013 An integrated holo-enhancer unit defines tissue and gene specificity of the fgf8 regulatory landscape. Dev. Cell 24, 530-542. (doi:10.1016/j.devcel. 2013.01.025)
    • (2013) Dev. Cell , vol.24 , pp. 530-542
    • Marinic, M.1    Aktas, T.2    Ruf, S.3    Spitz, F.4
  • 10
    • 78649231644 scopus 로고    scopus 로고
    • Origins, evolution, and phenotypic impact of new genes
    • (doi:10.1101/gr.101386.109)
    • Kaessmann H. 2010 Origins, evolution, and phenotypic impact of new genes. Genome Res. 20, 1313-1326. (doi:10.1101/gr.101386.109)
    • (2010) Genome Res , vol.20 , pp. 1313-1326
    • Kaessmann, H.1
  • 11
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • (doi:10.1126/science.288.5463.136)
    • Loots GG, Locksley RM, Blankespoor CM, Wang ZE, Miller W, Rubin EM, Frazer KA. 2000 Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science 288, 136-140. (doi:10.1126/science.288.5463.136)
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5    Rubin, E.M.6    Frazer, K.A.7
  • 12
    • 1842584947 scopus 로고    scopus 로고
    • Applied bioinformatics for the identification of regulatory elements
    • (doi:10. 1038/nrg1315)
    • Wasserman WW, Sandelin A. 2004 Applied bioinformatics for the identification of regulatory elements. Nat. Rev. Genet. 5, 276-287. (doi:10. 1038/nrg1315)
    • (2004) Nat. Rev. Genet , vol.5 , pp. 276-287
    • Wasserman, W.W.1    Sandelin, A.2
  • 14
    • 20044366725 scopus 로고    scopus 로고
    • Highly conserved non-coding sequences are associated with vertebrate development
    • (doi:10.1371/journal. pbio.0030007)
    • Woolfe A et al. 2005 Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol. 3, e7. (doi:10.1371/journal. pbio.0030007)
    • (2005) PLoS Biol , vol.3
    • Woolfe, A.1
  • 15
  • 16
    • 33751316959 scopus 로고    scopus 로고
    • In vivo enhancer analysis of human conserved non-coding sequences
    • (doi:10.1038/nature05295)
    • Pennacchio LA et al. 2006 In vivo enhancer analysis of human conserved non-coding sequences. Nature 444, 499-502. (doi:10.1038/nature05295)
    • (2006) Nature , vol.444 , pp. 499-502
    • Pennacchio, L.A.1
  • 17
    • 0036846746 scopus 로고    scopus 로고
    • The origin and evolution of model organisms
    • (doi:10. 1038/nrg929)
    • Hedges SB. 2002 The origin and evolution of model organisms. Nat. Rev. Genet. 3, 838-849. (doi:10. 1038/nrg929)
    • (2002) Nat. Rev. Genet , vol.3 , pp. 838-849
    • Hedges, S.B.1
  • 18
    • 33745628791 scopus 로고    scopus 로고
    • Close sequence comparisons are sufficient to identify human cis-regulatory elements
    • (doi:10.1101/gr.4717506)
    • Prabhakar S, Poulin F, Shoukry M, Afzal V, Rubin EM, Couronne O, Pennacchio LA. 2006 Close sequence comparisons are sufficient to identify human cis-regulatory elements. Genome Res. 16, 855-863. (doi:10.1101/gr.4717506)
    • (2006) Genome Res , vol.16 , pp. 855-863
    • Prabhakar, S.1    Poulin, F.2    Shoukry, M.3    Afzal, V.4    Rubin, E.M.5    Couronne, O.6    Pennacchio, L.A.7
  • 19
    • 15244341767 scopus 로고    scopus 로고
    • Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes
    • (doi:10.1016/j. tig.2005.02.006)
    • Plessy C, Dickmeis T, Chalmel F, Strahle U. 2005 Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes. Trends Genet. 21, 207-210. (doi:10.1016/j. tig.2005.02.006)
    • (2005) Trends Genet , vol.21 , pp. 207-210
    • Plessy, C.1    Dickmeis, T.2    Chalmel, F.3    Strahle, U.4
  • 20
    • 39049141215 scopus 로고    scopus 로고
    • Organization of conserved elements near key developmental regulators in vertebrate genomes
    • (doi:10.1016/S0065-2660(07)00012-0)
    • Woolfe A, Elgar G. 2008 Organization of conserved elements near key developmental regulators in vertebrate genomes. Adv. Genet. 61, 307-338. (doi:10.1016/S0065-2660(07)00012-0)
    • (2008) Adv. Genet , vol.61 , pp. 307-338
    • Woolfe, A.1    Elgar, G.2
  • 21
    • 80054973803 scopus 로고    scopus 로고
    • A high-resolution map of human evolutionary constraint using 29 mammals
    • (doi:10.1038/nature10530)
    • Lindblad-Toh K et al. 2011 A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478, 476-482. (doi:10.1038/nature10530)
    • (2011) Nature , vol.478 , pp. 476-482
    • Lindblad-Toh, K.1
  • 22
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • (doi:10.1038/nature07730)
    • Visel A et al. 2009 ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457, 854-858. (doi:10.1038/nature07730)
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1
  • 23
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • (doi:10. 1038/nature07829)
    • Heintzman ND et al. 2009 Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459, 108-112. (doi:10. 1038/nature07829)
    • (2009) Nature , vol.459 , pp. 108-112
    • Heintzman, N.D.1
  • 24
    • 84866065416 scopus 로고    scopus 로고
    • The chromatin fingerprint of gene enhancer elements
    • 896, (doi:10.1074/ jbc.R111.296491)
    • Zentner GE, Scacheri PC. 2012 The chromatin fingerprint of gene enhancer elements. J. Biol. Chem. 287, 30 888-30 896. (doi:10.1074/ jbc.R111.296491)
    • (2012) J. Biol. Chem. 287 , vol.30 , pp. 888-930
    • Zentner, G.E.1    Scacheri, P.C.2
  • 25
    • 84861529303 scopus 로고    scopus 로고
    • Enhancers as information integration hubs in development: Lessons from genomics
    • (doi:10.1016/j.tig.2012.02.008)
    • Buecker C, Wysocka J. 2012 Enhancers as information integration hubs in development: lessons from genomics. Trends Genet. 28, 276-284. (doi:10.1016/j.tig.2012.02.008)
    • (2012) Trends Genet , vol.28 , pp. 276-284
    • Buecker, C.1    Wysocka, J.2
  • 26
    • 77956641239 scopus 로고    scopus 로고
    • ChIP-Seq identification of weakly conserved heart enhancers
    • (doi:10.1038/ng.650)
    • Blow MJ et al. 2010 ChIP-Seq identification of weakly conserved heart enhancers. Nat. Genet. 42, 806-810. (doi:10.1038/ng.650)
    • (2010) Nat. Genet , vol.42 , pp. 806-810
    • Blow, M.J.1
  • 27
    • 84655164920 scopus 로고    scopus 로고
    • Large-scale discovery of enhancers from human heart tissue
    • (doi:10.1038/ng.1006)
    • May D et al. 2011 Large-scale discovery of enhancers from human heart tissue. Nat. Genet. 44, 89-93. (doi:10.1038/ng.1006)
    • (2011) Nat. Genet , vol.44 , pp. 89-93
    • May, D.1
  • 28
    • 34447515727 scopus 로고    scopus 로고
    • Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis
    • (doi:10.1126/science.1140871)
    • Lunyak VV et al. 2007 Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis. Science 317, 248-251. (doi:10.1126/science.1140871)
    • (2007) Science , vol.317 , pp. 248-251
    • Lunyak, V.V.1
  • 31
    • 55049105999 scopus 로고    scopus 로고
    • Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip
    • (doi:10.1038/ng.242)
    • Rahimov F et al. 2008 Disruption of an AP-2alpha binding site in an IRF6 enhancer is associated with cleft lip. Nat. Genet. 40, 1341-1347. (doi:10.1038/ng.242)
    • (2008) Nat. Genet , vol.40 , pp. 1341-1347
    • Rahimov, F.1
  • 32
    • 55049108856 scopus 로고    scopus 로고
    • Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein
    • (doi:10.1038/ng.230)
    • Jeong Y et al. 2008 Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein. Nat. Genet. 40, 1348-1353. (doi:10.1038/ng.230)
    • (2008) Nat. Genet , vol.40 , pp. 1348-1353
    • Jeong, Y.1
  • 33
    • 61349104285 scopus 로고    scopus 로고
    • Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence
    • (doi:10.1038/ng.329)
    • Benko S et al. 2009 Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence. Nat. Genet. 41, 359-364. (doi:10.1038/ng.329)
    • (2009) Nat. Genet , vol.41 , pp. 359-364
    • Benko, S.1
  • 34
    • 79955471262 scopus 로고    scopus 로고
    • Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease
    • (doi:10.1038/nn.2798)
    • Ghiasvand NM, Rudolph DD, Mashayekhi M, Brzezinski JAt, Goldman D, Glaser T. 2011 Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease. Nat. Neurosci. 14, 578-586. (doi:10.1038/nn.2798)
    • (2011) Nat. Neurosci , vol.14 , pp. 578-586
    • Ghiasvand, N.M.1    Rudolph, D.D.2    Mashayekhi, M.3    Jat, B.4    Goldman, D.5    Glaser, T.6
  • 35
    • 84870674626 scopus 로고    scopus 로고
    • Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors
    • (doi:10. 1126/science.1228606)
    • Sur IK et al. 2012 Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors. Science 338, 1360-1363. (doi:10. 1126/science.1228606)
    • (2012) Science , vol.338 , pp. 1360-1363
    • Sur, I.K.1
  • 36
    • 84863279822 scopus 로고    scopus 로고
    • Identification of a chronic obstructive pulmonary disease genetic determinant that regulates HHIP
    • (doi:10.1093/hmg/ddr569)
    • Zhou X et al. 2012 Identification of a chronic obstructive pulmonary disease genetic determinant that regulates HHIP. Hum. Mol. Genet. 21, 1325-1335. (doi:10.1093/hmg/ddr569)
    • (2012) Hum. Mol. Genet , vol.21 , pp. 1325-1335
    • Zhou, X.1
  • 37
    • 58149394389 scopus 로고    scopus 로고
    • Evaluation of cis-regulatory function in zebrafish
    • (doi:10.1093/ bfgp/eln045)
    • Pashos EE, Kague E, Fisher S. 2008 Evaluation of cis-regulatory function in zebrafish. Brief Funct. Genomic Proteomic 7, 465-473. (doi:10.1093/ bfgp/eln045)
    • (2008) Brief Funct. Genomic Proteomic , vol.7 , pp. 465-473
    • Pashos, E.E.1    Kague, E.2    Fisher, S.3
  • 39
    • 39049147650 scopus 로고    scopus 로고
    • Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
    • (doi:10.1101/gr.6929408)
    • McGaughey DM, Vinton RM, Huynh J, Al-Saif A, Beer MA, McCallion AS. 2008 Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b. Genome Res. 18, 252-260. (doi:10.1101/gr.6929408)
    • (2008) Genome Res , vol.18 , pp. 252-260
    • McGaughey, D.M.1    Vinton, R.M.2    Huynh, J.3    Al-Saif, A.4    Beer, M.A.5    McCallion, A.S.6
  • 40
    • 77957225928 scopus 로고    scopus 로고
    • The importance of being cis: Evolution of orthologous fish and mammalian enhancer activity
    • (doi:10.1093/ molbev/msq128)
    • Ritter DI, Li Q, Kostka D, Pollard KS, Guo S, Chuang JH. 2010 The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. Mol. Biol. Evol. 27, 2322-2332. (doi:10.1093/ molbev/msq128)
    • (2010) Mol. Biol. Evol , vol.27 , pp. 2322-2332
    • Ritter, D.I.1    Li, Q.2    Kostka, D.3    Pollard, K.S.4    Guo, S.5    Chuang, J.H.6
  • 41
    • 80054109588 scopus 로고    scopus 로고
    • Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes
    • (doi:10.1186/1471-213X-11-63)
    • Chatterjee S, Bourque G, Lufkin T. 2011 Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes. BMC Dev. Biol. 11, 63. (doi:10.1186/1471-213X-11-63)
    • (2011) BMC Dev. Biol , vol.11 , pp. 63
    • Chatterjee, S.1    Bourque, G.2    Lufkin, T.3
  • 42
    • 84864462544 scopus 로고    scopus 로고
    • A map of the cis-regulatory sequences in the mouse genome
    • (doi:10.1038/nature11243)
    • Shen Y et al. 2012 A map of the cis-regulatory sequences in the mouse genome. Nature 488, 116-120. (doi:10.1038/nature11243)
    • (2012) Nature , vol.488 , pp. 116-120
    • Shen, Y.1
  • 43
    • 33645833857 scopus 로고    scopus 로고
    • Conservation of RET regulatory function from human to zebrafish without sequence similarity
    • (doi:10.1126/ science.1124070)
    • Fisher S, Grice EA, Vinton RM, Bessling SL, McCallion AS. 2006 Conservation of RET regulatory function from human to zebrafish without sequence similarity. Science 312, 276-279. (doi:10.1126/ science.1124070)
    • (2006) Science , vol.312 , pp. 276-279
    • Fisher, S.1    Grice, E.A.2    Vinton, R.M.3    Bessling, S.L.4    McCallion, A.S.5
  • 44
    • 84871117732 scopus 로고    scopus 로고
    • Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression
    • (doi:10.1186/1471-2164-13-713)
    • Ariza-Cosano A, Visel A, Pennacchio LA, Fraser HB, Gomez-Skarmeta JL, Irimia M, Bessa J. 2012 Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression. BMC Genomics 13, 713. (doi:10.1186/1471-2164-13-713)
    • (2012) BMC Genomics , vol.13 , pp. 713
    • Ariza-Cosano, A.1    Visel, A.2    Pennacchio, L.A.3    Fraser, H.B.4    Gomez-Skarmeta, J.L.5    Irimia, M.6    Bessa, J.7
  • 46
    • 35948981635 scopus 로고    scopus 로고
    • Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
    • (doi:10.1371/journal.pgen.0030166)
    • Santangelo AM, de Souza FS, Franchini LF, Bumaschny VF, Low MJ, Rubinstein M. 2007 Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene. PLoS Genet. 3, 1813-1826. (doi:10.1371/journal.pgen.0030166)
    • (2007) PLoS Genet , vol.3 , pp. 1813-1826
    • Santangelo, A.M.1    de Souza, F.S.2    Franchini, L.F.3    Bumaschny, V.F.4    Low, M.J.5    Rubinstein, M.6
  • 48
    • 0043026937 scopus 로고    scopus 로고
    • Proopiomelanocortin, a polypeptide precursor with multiple functions: From physiology to pathological conditions
    • (doi:10. 1530/eje.0.1490079)
    • Raffin-Sanson ML, de Keyzer Y, Bertagna X. 2003 Proopiomelanocortin, a polypeptide precursor with multiple functions: from physiology to pathological conditions. Eur. J. Endocrinol. 149, 79-90. (doi:10. 1530/eje.0.1490079)
    • (2003) Eur. J. Endocrinol , vol.149 , pp. 79-90
    • Raffin-Sanson, M.L.1    de Keyzer, Y.2    Bertagna, X.3
  • 49
    • 34249930436 scopus 로고    scopus 로고
    • Plasticity in the melanotrope neuroendocrine interface of Xenopus laevis
    • (doi:10.1159/000101434)
    • Jenks BG, Kidane AH, Scheenen WJ, Roubos EW. 2007 Plasticity in the melanotrope neuroendocrine interface of Xenopus laevis. Neuroendocrinology 85, 177-185. (doi:10.1159/000101434)
    • (2007) Neuroendocrinology , vol.85 , pp. 177-185
    • Jenks, B.G.1    Kidane, A.H.2    Scheenen, W.J.3    Roubos, E.W.4
  • 50
    • 35348848018 scopus 로고    scopus 로고
    • The role of proopiomelanocortin (POMC) neurones in feeding behaviour
    • (doi:10.1186/ 1743-7075-4-18)
    • Millington GW. 2007 The role of proopiomelanocortin (POMC) neurones in feeding behaviour. Nutr. Metab. (Lond.) 4, 18. (doi:10.1186/ 1743-7075-4-18)
    • (2007) Nutr. Metab. (Lond.) , vol.4 , pp. 18
    • Millington, G.W.1
  • 51
    • 27844481977 scopus 로고    scopus 로고
    • Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes
    • (doi:10.1093/ molbev/msi236)
    • de Souza FS, Bumaschny VF, Low MJ, Rubinstein M. 2005 Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes. Mol. Biol. Evol. 22, 2417-2427. (doi:10.1093/ molbev/msi236)
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2417-2427
    • de Souza, F.S.1    Bumaschny, V.F.2    Low, M.J.3    Rubinstein, M.4
  • 52
    • 0038636259 scopus 로고    scopus 로고
    • Pituitary corticotroph ontogeny and regulation in transgenic zebrafish
    • (doi:10. 1210/me.2002-0392)
    • Liu NA, Huang H, Yang Z, Herzog W, Hammerschmidt M, Lin S, Melmed S. 2003 Pituitary corticotroph ontogeny and regulation in transgenic zebrafish. Mol. Endocrinol. 17, 959-966. (doi:10. 1210/me.2002-0392)
    • (2003) Mol. Endocrinol , vol.17 , pp. 959-966
    • Liu, N.A.1    Huang, H.2    Yang, Z.3    Herzog, W.4    Hammerschmidt, M.5    Lin, S.6    Melmed, S.7
  • 53
    • 0037328644 scopus 로고    scopus 로고
    • Adenohypophysis formation in the zebrafish and its dependence on sonic hedgehog
    • (doi:10.1016/S0012-1606(02)00124-0)
    • Herzog W, Zeng X, Lele Z, Sonntag C, Ting JW, Chang CY, Hammerschmidt M. 2003 Adenohypophysis formation in the zebrafish and its dependence on sonic hedgehog. Dev. Biol. 254, 36-49. (doi:10.1016/S0012-1606(02)00124-0)
    • (2003) Dev. Biol , vol.254 , pp. 36-49
    • Herzog, W.1    Zeng, X.2    Lele, Z.3    Sonntag, C.4    Ting, J.W.5    Chang, C.Y.6    Hammerschmidt, M.7
  • 54
    • 35648958713 scopus 로고    scopus 로고
    • Transcriptional regulation of pituitary POMC is conserved at the vertebrate extremes despite great promoter sequence divergence
    • (doi:10.1210/me.2006-0557)
    • Bumaschny VF, de Souza FS, Lopez Leal RA, Santangelo AM, Baetscher M, Levi DH, Low MJ, Rubinstein M. 2007 Transcriptional regulation of pituitary POMC is conserved at the vertebrate extremes despite great promoter sequence divergence. Mol. Endocrinol. 21, 2738-2749. (doi:10.1210/me.2006-0557)
    • (2007) Mol. Endocrinol , vol.21 , pp. 2738-2749
    • Bumaschny, V.F.1    de Souza, F.S.2    Lopez, L.R.A.3    Santangelo, A.M.4    Baetscher, M.5    Levi, D.H.6    Low, M.J.7    Rubinstein, M.8
  • 55
    • 0026737813 scopus 로고
    • Identification of DNA elements cooperatively activating proopiomelanocortin gene expression in the pituitary glands of transgenic mice
    • Liu B, Hammer GD, Rubinstein M, Mortrud M, Low MJ. 1992 Identification of DNA elements cooperatively activating proopiomelanocortin gene expression in the pituitary glands of transgenic mice. Mol. Cell Biol. 12, 3978-3990.
    • (1992) Mol. Cell Biol , vol.12 , pp. 3978-3990
    • Liu, B.1    Hammer, G.D.2    Rubinstein, M.3    Mortrud, M.4    Low, M.J.5
  • 56
    • 65449170471 scopus 로고    scopus 로고
    • Regulation of proopiomelanocortin gene expression: An overview of the signaling cascades, transcription factors, and responsive elements involved
    • (doi:10.1111/j.1749-6632.2008.03620.x)
    • Jenks BG. 2009 Regulation of proopiomelanocortin gene expression: an overview of the signaling cascades, transcription factors, and responsive elements involved. Ann. N.Y. Acad. Sci. 1163, 17-30. (doi:10.1111/j.1749-6632.2008.03620.x)
    • (2009) Ann. N.Y. Acad. Sci , vol.1163 , pp. 17-30
    • Jenks, B.G.1
  • 57
    • 79951720177 scopus 로고    scopus 로고
    • A pituitary-specific enhancer of the POMC gene with preferential activity in corticotrope cells
    • (doi:10.1210/me. 2010-0422)
    • Langlais D, Couture C, Sylvain-Drolet G, Drouin J. 2011 A pituitary-specific enhancer of the POMC gene with preferential activity in corticotrope cells. Mol. Endocrinol. 25, 348-359. (doi:10.1210/me. 2010-0422)
    • (2011) Mol. Endocrinol , vol.25 , pp. 348-359
    • Langlais, D.1    Couture, C.2    Sylvain-Drolet, G.3    Drouin, J.4
  • 58
    • 0037051940 scopus 로고    scopus 로고
    • Transgene-driven protein expression specific to the intermediate pituitary melanotrope cells of Xenopus laevis
    • (doi:10.1016/ S0014-5793(02)02523-1)
    • Jansen EJ, Holling TM, van Herp F, Martens GJ. 2002 Transgene-driven protein expression specific to the intermediate pituitary melanotrope cells of Xenopus laevis. FEBS Lett. 516, 201-207. (doi:10.1016/ S0014-5793(02)02523-1)
    • (2002) FEBS Lett , vol.516 , pp. 201-207
    • Jansen, E.J.1    Holling, T.M.2    van Herp, F.3    Martens, G.J.4
  • 59
    • 0032171573 scopus 로고    scopus 로고
    • Authentic cell-specific and developmentally regulated expression of proopiomelanocortin genomic fragments in hypothalamic and hindbrain neurons of transgenic mice
    • Young JI, Otero V, Cerdan MG, Falzone TL, Chan EC, Low MJ, Rubinstein M. 1998 Authentic cell-specific and developmentally regulated expression of proopiomelanocortin genomic fragments in hypothalamic and hindbrain neurons of transgenic mice. J. Neurosci. 18, 6631-6640.
    • (1998) J. Neurosci , vol.18 , pp. 6631-6640
    • Young, J.I.1    Otero, V.2    Cerdan, M.G.3    Falzone, T.L.4    Chan, E.C.5    Low, M.J.6    Rubinstein, M.7
  • 60
    • 16244381143 scopus 로고    scopus 로고
    • Identification of neuronal enhancers of the proopiomelanocortin gene by transgenic mouse analysis and phylogenetic footprinting
    • (doi:10.1128/MCB.25.8. 3076-3086.2005)
    • de Souza FS, Santangelo AM, Bumaschny V, Avale ME, Smart JL, Low MJ, Rubinstein M. 2005 Identification of neuronal enhancers of the proopiomelanocortin gene by transgenic mouse analysis and phylogenetic footprinting. Mol. Cell. Biol. 25, 3076-3086. (doi:10.1128/MCB.25.8. 3076-3086.2005)
    • (2005) Mol. Cell. Biol , vol.25 , pp. 3076-3086
    • de Souza, F.S.1    Santangelo, A.M.2    Bumaschny, V.3    Avale, M.E.4    Smart, J.L.5    Low, M.J.6    Rubinstein, M.7
  • 61
    • 84877772871 scopus 로고    scopus 로고
    • Positive selection of co-opted mobile genetic elements in a mammalian gene: If you can't beat them, join them
    • (doi:10.4161/mge.20267)
    • Franchini LF, de Souza FS, Low MJ, Rubinstein M. 2012 Positive selection of co-opted mobile genetic elements in a mammalian gene: if you can't beat them, join them. Mob. Genet. Elements 2, 106-109. (doi:10.4161/mge.20267)
    • (2012) Mob. Genet. Elements , vol.2 , pp. 106-109
    • Franchini, L.F.1    de Souza, F.S.2    Low, M.J.3    Rubinstein, M.4
  • 62
    • 0027453569 scopus 로고
    • Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos
    • Thisse C, Thisse B, Schilling TF, Postlethwait JH. 1993 Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos. Development 119, 1203-1215.
    • (1993) Development , vol.119 , pp. 1203-1215
    • Thisse, C.1    Thisse, B.2    Schilling, T.F.3    Postlethwait, J.H.4
  • 64
    • 36248961112 scopus 로고    scopus 로고
    • Conserved neurochemical pathways involved in hypothalamic control of energy homeostasis
    • (doi:10.1002/cne.21447)
    • Forlano PM, Cone RD. 2007 Conserved neurochemical pathways involved in hypothalamic control of energy homeostasis. J. Comp. Neurol. 505, 235-248. (doi:10.1002/cne.21447)
    • (2007) J. Comp. Neurol , vol.505 , pp. 235-248
    • Forlano, P.M.1    Cone, R.D.2
  • 65
    • 79951793352 scopus 로고    scopus 로고
    • Zebrafish in endocrine systems: Recent advances and implications for human disease
    • (doi:10.1146/annurev-physiol-012110-142320)
    • Lohr H, Hammerschmidt M. 2011 Zebrafish in endocrine systems: recent advances and implications for human disease. Annu. Rev. Physiol. 73, 183-211. (doi:10.1146/annurev-physiol-012110-142320)
    • (2011) Annu. Rev. Physiol , vol.73 , pp. 183-211
    • Lohr, H.1    Hammerschmidt, M.2
  • 67
    • 0345599261 scopus 로고    scopus 로고
    • Identification of two proopiomelanocortin genes in zebrafish (Danio rerio)
    • (doi:10.1016/j.molbrainres. 2003.09.012)
    • Gonzalez-Nunez V, Gonzalez-Sarmiento R, Rodriguez RE. 2003 Identification of two proopiomelanocortin genes in zebrafish (Danio rerio). Brain Res. Mol. Brain Res. 120, 1-8. (doi:10.1016/j.molbrainres. 2003.09.012)
    • (2003) Brain Res. Mol. Brain Res , vol.120 , pp. 1-8
    • Gonzalez-Nunez, V.1    Gonzalez-Sarmiento, R.2    Rodriguez, R.E.3
  • 68
    • 84861456609 scopus 로고    scopus 로고
    • Coding exons function as tissue-specific enhancers of nearby genes
    • (doi:10.1101/gr.133546.111)
    • Birnbaum RY et al. 2012 Coding exons function as tissue-specific enhancers of nearby genes. Genome Res. 22, 1059-1068. (doi:10.1101/gr.133546.111)
    • (2012) Genome Res , vol.22 , pp. 1059-1068
    • Birnbaum, R.Y.1
  • 69
    • 84876798186 scopus 로고    scopus 로고
    • The zebrafish reference genome sequence and its relationship to the human genome
    • (doi:10.1038/ nature12111)
    • Howe K et al. 2013 The zebrafish reference genome sequence and its relationship to the human genome. Nature 496, 498-503. (doi:10.1038/ nature12111)
    • (2013) Nature , vol.496 , pp. 498-503
    • Howe, K.1
  • 70
    • 82455192847 scopus 로고    scopus 로고
    • De novo genesis of enhancers in vertebrates
    • (doi:10.1371/journal.pbio.1001188)
    • Eichenlaub MP, Ettwiller L. 2011 De novo genesis of enhancers in vertebrates. PLoS Biol. 9, e1001188. (doi:10.1371/journal.pbio.1001188)
    • (2011) PLoS Biol , vol.9
    • Eichenlaub, M.P.1    Ettwiller, L.2
  • 71
    • 0034607549 scopus 로고    scopus 로고
    • Evolutionary inventions and continuity of CORE-SINEs in mammals
    • (doi:10.1006/jmbi.2000.3695)
    • Gilbert N, Labuda D. 2000 Evolutionary inventions and continuity of CORE-SINEs in mammals. J. Mol. Biol. 298, 365-377. (doi:10.1006/jmbi.2000.3695)
    • (2000) J. Mol. Biol , vol.298 , pp. 365-377
    • Gilbert, N.1    Labuda, D.2
  • 72
    • 0033017956 scopus 로고    scopus 로고
    • CORE-SINEs: Eukaryotic short interspersed retroposing elements with common sequence motifs
    • (doi:10.1073/pnas.96.6.2869)
    • Gilbert N, Labuda D. 1999 CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs. Proc. Natl Acad. Sci. USA 96, 2869-2874. (doi:10.1073/pnas.96.6.2869)
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 2869-2874
    • Gilbert, N.1    Labuda, D.2
  • 73
    • 0027174559 scopus 로고
    • Identification of a new, abundant superfamily of mammalian LTR-transposons
    • (doi:10.1093/ nar/21.8.1863)
    • Smit AF. 1993 Identification of a new, abundant superfamily of mammalian LTR-transposons. Nucleic Acids Res. 21, 1863-1872. (doi:10.1093/ nar/21.8.1863)
    • (1993) Nucleic Acids Res , vol.21 , pp. 1863-1872
    • Smit, A.F.1
  • 74
    • 77951874066 scopus 로고    scopus 로고
    • Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
    • (doi:10.1101/gr.104471.109)
    • Gotea V, Visel A, Westlund JM, Nobrega MA, Pennacchio LA, Ovcharenko I. 2010 Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers. Genome Res. 20, 565-577. (doi:10.1101/gr.104471.109)
    • (2010) Genome Res , vol.20 , pp. 565-577
    • Gotea, V.1    Visel, A.2    Westlund, J.M.3    Nobrega, M.A.4    Pennacchio, L.A.5    Ovcharenko, I.6
  • 77
    • 34347380896 scopus 로고    scopus 로고
    • Creation of a genetic model of obesity in a teleost
    • (doi:10.1096/fj.06-7503com)
    • Song Y, Cone RD. 2007 Creation of a genetic model of obesity in a teleost. FASEB J. 21, 2042-2049. (doi:10.1096/fj.06-7503com)
    • (2007) FASEB J , vol.21 , pp. 2042-2049
    • Song, Y.1    Cone, R.D.2
  • 78
    • 0842270053 scopus 로고    scopus 로고
    • Agouti-related protein (AGRP) is conserved and regulated by metabolic state in the zebrafish, Danio rerio
    • (doi:10.1385/ ENDO:22:3:257)
    • Song Y, Golling G, Thacker TL, Cone RD. 2003 Agouti-related protein (AGRP) is conserved and regulated by metabolic state in the zebrafish, Danio rerio. Endocrine 22, 257-265. (doi:10.1385/ ENDO:22:3:257)
    • (2003) Endocrine , vol.22 , pp. 257-265
    • Song, Y.1    Golling, G.2    Thacker, T.L.3    Cone, R.D.4
  • 79
    • 2542475227 scopus 로고    scopus 로고
    • Brain mapping of three somatostatin encoding genes in the goldfish
    • (doi:10. 1002/cne.20097)
    • Canosa LF, Cerda-Reverter JM, Peter RE. 2004 Brain mapping of three somatostatin encoding genes in the goldfish. J. Comp. Neurol. 474, 43-57. (doi:10. 1002/cne.20097)
    • (2004) J. Comp. Neurol , vol.474 , pp. 43-57
    • Canosa, L.F.1    Cerda-Reverter, J.M.2    Peter, R.E.3
  • 80
    • 65249164937 scopus 로고    scopus 로고
    • Distribution of growth hormone-releasing hormone-like peptide: Immunoreactivity in the central nervous system of the adult zebrafish (Danio rerio)
    • (doi:10.1002/cne.21977)
    • Castro A, Becerra M, Manso MJ, Tello J, Sherwood NM, Anadon R. 2009 Distribution of growth hormone-releasing hormone-like peptide: immunoreactivity in the central nervous system of the adult zebrafish (Danio rerio). J. Comp. Neurol. 513, 685-701. (doi:10.1002/cne.21977)
    • (2009) J. Comp. Neurol , vol.513 , pp. 685-701
    • Castro, A.1    Becerra, M.2    Manso, M.J.3    Tello, J.4    Sherwood, N.M.5    Anadon, R.6
  • 83
    • 0141450532 scopus 로고    scopus 로고
    • Endogenous melanocortin antagonist in fish: Structure, brain mapping, and regulation by fasting of the goldfish agouti-related protein gene
    • (doi:10.1210/en.2003-0453)
    • Cerda-Reverter JM, Peter RE. 2003 Endogenous melanocortin antagonist in fish: structure, brain mapping, and regulation by fasting of the goldfish agouti-related protein gene. Endocrinology 144, 4552-4561. (doi:10.1210/en.2003-0453)
    • (2003) Endocrinology , vol.144 , pp. 4552-4561
    • Cerda-Reverter, J.M.1    Peter, R.E.2
  • 84
    • 17144440187 scopus 로고    scopus 로고
    • The central melanocortin system regulates food intake in goldfish
    • (doi:10.1016/ S0167-0115(03)00144-7)
    • Cerda-Reverter JM, Schioth HB, Peter RE. 2003 The central melanocortin system regulates food intake in goldfish. Regul. Pept. 115, 101-113. (doi:10.1016/ S0167-0115(03)00144-7)
    • (2003) Regul. Pept , vol.115 , pp. 101-113
    • Cerda-Reverter, J.M.1    Schioth, H.B.2    Peter, R.E.3
  • 85
    • 58149151076 scopus 로고    scopus 로고
    • Melanocortin peptides affect the motivation to feed in rainbow trout (Oncorhynchus mykiss)
    • (doi:10.1016/j.ygcen.2008.11.003)
    • Schjolden J, Schioth HB, Larhammar D, Winberg S, Larson ET. 2009 Melanocortin peptides affect the motivation to feed in rainbow trout (Oncorhynchus mykiss). Gen. Comp. Endocrinol. 160, 134-138. (doi:10.1016/j.ygcen.2008.11.003)
    • (2009) Gen. Comp. Endocrinol , vol.160 , pp. 134-138
    • Schjolden, J.1    Schioth, H.B.2    Larhammar, D.3    Winberg, S.4    Larson, E.T.5
  • 86
    • 84855473048 scopus 로고    scopus 로고
    • Ontogeny of the cocaine- and amphetamineregulated transcript (CART) neuropeptide system in the brain of zebrafish, Danio rerio
    • (doi:10.1002/cne.22779)
    • Mukherjee A, Subhedar NK, Ghose A. 2012 Ontogeny of the cocaine- and amphetamineregulated transcript (CART) neuropeptide system in the brain of zebrafish, Danio rerio. J. Comp. Neurol. 520, 770-797. (doi:10.1002/cne.22779)
    • (2012) J. Comp. Neurol , vol.520 , pp. 770-797
    • Mukherjee, A.1    Subhedar, N.K.2    Ghose, A.3
  • 88
    • 34250900443 scopus 로고    scopus 로고
    • Conserved sensory-neurosecretory cell types in annelid and fish forebrain: Insights into hypothalamus evolution
    • (doi:10.1016/j.cell.2007.04.041)
    • Tessmar-Raible K, Raible F, Christodoulou F, Guy K, Rembold M, Hausen H, Arendt D. 2007 Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution. Cell 129, 1389-1400. (doi:10.1016/j.cell.2007.04.041)
    • (2007) Cell , vol.129 , pp. 1389-1400
    • Tessmar-Raible, K.1    Raible, F.2    Christodoulou, F.3    Guy, K.4    Rembold, M.5    Hausen, H.6    Arendt, D.7
  • 89
    • 68349126793 scopus 로고    scopus 로고
    • Neuroendocrine transcriptional programs adapt dynamically to the supply and demand for neuropeptides as revealed in NSF mutant zebrafish
    • (doi:10.1186/ 1749-8104-4-22)
    • Kurrasch DM, Nevin LM, Wong JS, Baier H, Ingraham HA. 2009 Neuroendocrine transcriptional programs adapt dynamically to the supply and demand for neuropeptides as revealed in NSF mutant zebrafish. Neural Dev. 4, 22. (doi:10.1186/ 1749-8104-4-22)
    • (2009) Neural Dev , vol.4 , pp. 22
    • Kurrasch, D.M.1    Nevin, L.M.2    Wong, J.S.3    Baier, H.4    Ingraham, H.A.5
  • 90
    • 79952483291 scopus 로고    scopus 로고
    • Evolution of POMC: Origin, phylogeny, posttranslational processing, and the melanocortins
    • (doi:10.1111/j.1749-6632.2010.05928.x)
    • Dores RM, Baron AJ. 2011 Evolution of POMC: origin, phylogeny, posttranslational processing, and the melanocortins. Ann. N.Y. Acad. Sci. 1220, 34-48. (doi:10.1111/j.1749-6632.2010.05928.x)
    • (2011) Ann. N.Y. Acad. Sci , vol.1220 , pp. 34-48
    • Dores, R.M.1    Baron, A.J.2
  • 91
    • 0031922318 scopus 로고    scopus 로고
    • Spatial and temporal distribution of proopiomelanotropin and proopiocortin mRNA during the life cycle of the sea lamprey: A qualitative and quantitative in situ hybridisation study
    • (doi:10.1006/gcen.1998.7071)
    • Ficele G, Heinig JA, Kawauchi H, Youson JH, Keeley FW, Wright GM. 1998 Spatial and temporal distribution of proopiomelanotropin and proopiocortin mRNA during the life cycle of the sea lamprey: a qualitative and quantitative in situ hybridisation study. Gen. Comp. Endocrinol. 110, 212-225. (doi:10.1006/gcen.1998.7071)
    • (1998) Gen. Comp. Endocrinol , vol.110 , pp. 212-225
    • Ficele, G.1    Heinig, J.A.2    Kawauchi, H.3    Youson, J.H.4    Keeley, F.W.5    Wright, G.M.6
  • 92
    • 0035015963 scopus 로고    scopus 로고
    • Marked distributional difference of alpha-melanocyte-stimulating hormone (alpha- MSH)-like immunoreactivity in the brain between two elasmobranchs (Scyliorhinus torazame and Etmopterus brachyurus): An immunohistochemical study
    • (doi:10.1006/gcen.2001.7628)
    • Chiba A. 2001 Marked distributional difference of alpha-melanocyte-stimulating hormone (alpha- MSH)-like immunoreactivity in the brain between two elasmobranchs (Scyliorhinus torazame and Etmopterus brachyurus): an immunohistochemical study. Gen. Comp. Endocrinol. 122, 287-295. (doi:10.1006/gcen.2001.7628)
    • (2001) Gen. Comp. Endocrinol , vol.122 , pp. 287-295
    • Chiba, A.1
  • 93
    • 4143095940 scopus 로고    scopus 로고
    • Novel evolutionary relationship among four fish model systems
    • (doi:10.1016/j.tig.2004.07.005)
    • Chen WJ, Orti G, Meyer A. 2004 Novel evolutionary relationship among four fish model systems. Trends Genet. 20, 424-431. (doi:10.1016/j.tig.2004.07.005)
    • (2004) Trends Genet , vol.20 , pp. 424-431
    • Chen, W.J.1    Orti, G.2    Meyer, A.3


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