메뉴 건너뛰기




Volumn 15, Issue 8, 2005, Pages 1061-1072

A functional survey of the enhancer activity of conserved non-coding sequences from vertebrate Iroquois cluster gene deserts

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE; GENE CLUSTER; GENE EXPRESSION; GENE SEQUENCE; IROQUOIS GENE; MAMMAL; NONHUMAN; PRIORITY JOURNAL; VERTEBRATE; XENOPUS; ZEBRA FISH;

EID: 23744502709     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.4004805     Document Type: Article
Times cited : (160)

References (40)
  • 2
    • 0034756824 scopus 로고    scopus 로고
    • Comparative genomics of the SOX9 region in human and Fugu rubripes: Conservation of short regulatory sequence elements within large intergenic regions
    • Bagheri-Fam, S., Ferraz, C., Demaille, J., Scherer, G., and Pfeifer, D. 2001. Comparative genomics of the SOX9 region in human and Fugu rubripes: Conservation of short regulatory sequence elements within large intergenic regions. Genomics 78: 73-82.
    • (2001) Genomics , vol.78 , pp. 73-82
    • Bagheri-Fam, S.1    Ferraz, C.2    Demaille, J.3    Scherer, G.4    Pfeifer, D.5
  • 4
    • 0032472413 scopus 로고    scopus 로고
    • Xiro3 encodes a Xenopus homolog of the Drosophila Iroquois genes and functions in neural specification
    • Bellefroid, E.J., Kobbe, A., Gruss, P., Pieler, T., Gurdon, J.B., and Papalopulu, N. 1998. Xiro3 encodes a Xenopus homolog of the Drosophila Iroquois genes and functions in neural specification. EMBO J. 17: 191-203.
    • (1998) EMBO J. , vol.17 , pp. 191-203
    • Bellefroid, E.J.1    Kobbe, A.2    Gruss, P.3    Pieler, T.4    Gurdon, J.B.5    Papalopulu, N.6
  • 5
    • 0027507739 scopus 로고
    • Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome
    • Brenner, S., Elgar, G., Sandford, R., Macrae, A., Venkatesh, B., and Aparicio, S. 1993. Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366: 265-268.
    • (1993) Nature , vol.366 , pp. 265-268
    • Brenner, S.1    Elgar, G.2    Sandford, R.3    Macrae, A.4    Venkatesh, B.5    Aparicio, S.6
  • 6
    • 0035252990 scopus 로고    scopus 로고
    • Specification of neuronal fates in the ventral neural tube
    • Briscoe, J. and Ericson, J. 2001. Specification of neuronal fates in the ventral neural tube. Curr. Opin. Neurobiol. 11: 43-49.
    • (2001) Curr. Opin. Neurobiol. , vol.11 , pp. 43-49
    • Briscoe, J.1    Ericson, J.2
  • 7
    • 3543018511 scopus 로고    scopus 로고
    • Organization of Iroquois genes in fish
    • Dildrop, R. and Ruther, U. 2004. Organization of Iroquois genes in fish. Dev. Genes Evol. 214: 267-276.
    • (2004) Dev. Genes Evol. , vol.214 , pp. 267-276
    • Dildrop, R.1    Ruther, U.2
  • 8
    • 0031906659 scopus 로고    scopus 로고
    • Hox is in the hair: A break in colinearity?
    • Duboule, D. 1998. Hox is in the hair: A break in colinearity? Genes & Dev. 12: 1-4.
    • (1998) Genes & Dev. , vol.12 , pp. 1-4
    • Duboule, D.1
  • 10
    • 0037271322 scopus 로고    scopus 로고
    • Cross-species sequence comparisons: A review of methods and available resources
    • Frazer, K.A., Elnitski, L., Church, D.M., Dubchak, I., and Hardison, R.C. 2003. Cross-species sequence comparisons: A review of methods and available resources. Genome Res. 13: 1-12.
    • (2003) Genome Res. , vol.13 , pp. 1-12
    • Frazer, K.A.1    Elnitski, L.2    Church, D.M.3    Dubchak, I.4    Hardison, R.C.5
  • 12
    • 0034839138 scopus 로고    scopus 로고
    • Developmental expression of the Xenopus Iroquois-family homeobox genes, Irx4 and Irx5
    • Garriock, R.J., Vokes, S.A., Small, E.M., Larson, R., and Krieg, P.A. 2001. Developmental expression of the Xenopus Iroquois-family homeobox genes, Irx4 and Irx5. Dev. Genes Evol. 211: 257-260.
    • (2001) Dev. Genes Evol. , vol.211 , pp. 257-260
    • Garriock, R.J.1    Vokes, S.A.2    Small, E.M.3    Larson, R.4    Krieg, P.A.5
  • 13
    • 0029562615 scopus 로고
    • Antagonizing the Spemann organizer: Role of the homeobox gene Xvent-1
    • Gawantka, V., Delius, H., Hirschfeld, K., Blumenstock, C., and Niehrs, C. 1995. Antagonizing the Spemann organizer: Role of the homeobox gene Xvent-1. EMBO J. 14: 6268-6279.
    • (1995) EMBO J. , vol.14 , pp. 6268-6279
    • Gawantka, V.1    Delius, H.2    Hirschfeld, K.3    Blumenstock, C.4    Niehrs, C.5
  • 15
    • 0036668276 scopus 로고    scopus 로고
    • Iroquois genes: Genomic organization and function in vertebrate neural development
    • Gómez-Skarmeta, J.L. and Modolell, J. 2002. Iroquois genes: Genomic organization and function in vertebrate neural development. Curr. Opin. Genet. Dev. 12: 403-408.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 403-408
    • Gómez-Skarmeta, J.L.1    Modolell, J.2
  • 16
    • 0345267408 scopus 로고    scopus 로고
    • Xiro, a Xenopus homolog of the Drosophila Iroquois complex genes, controls development of the neural plate
    • Gómez-Skarmeta, J.L., Glavic, A., de la Calle-Mustienes, E., Modolell, J., and Mayor, R. 1998. Xiro, a Xenopus homolog of the Drosophila Iroquois complex genes, controls development of the neural plate. EMBO J. 17: 181-190.
    • (1998) EMBO J. , vol.17 , pp. 181-190
    • Gómez-Skarmeta, J.L.1    Glavic, A.2    De La Calle-Mustienes, E.3    Modolell, J.4    Mayor, R.5
  • 17
    • 0043209361 scopus 로고    scopus 로고
    • Half a century of neural prepatterning: The story of a few bristles and many genes
    • Gómez-Skarmeta, J.L., Campuzano, S., and Modolell, J. 2003. Half a century of neural prepatterning: The story of a few bristles and many genes. Nat. Rev. Neurosci. 4: 587-598.
    • (2003) Nat. Rev. Neurosci. , vol.4 , pp. 587-598
    • Gómez-Skarmeta, J.L.1    Campuzano, S.2    Modolell, J.3
  • 19
    • 0026285616 scopus 로고
    • In situ hybridization: An improved whole mount method for Xenopus embryos
    • Harland, R. 1991. In situ hybridization: An improved whole mount method for Xenopus embryos. Methods Cell Biol. 36: 685-695.
    • (1991) Methods Cell Biol. , vol.36 , pp. 685-695
    • Harland, R.1
  • 21
    • 0028350952 scopus 로고
    • Whole-mount in situ hybridizations on zebrafish embryos using a mixture of digoxigenin- And fluorescein-labelled probes
    • Jowett, T. and Lettice, L. 1994. Whole-mount in situ hybridizations on zebrafish embryos using a mixture of digoxigenin- and fluorescein-labelled probes. Trends Genet. 10: 73-74.
    • (1994) Trends Genet. , vol.10 , pp. 73-74
    • Jowett, T.1    Lettice, L.2
  • 22
    • 0029806183 scopus 로고    scopus 로고
    • Transgenic Xenopus embryos from sperm nuclear transplantations reveal FGF signaling requirements during gastrulation
    • Kroll, K.L. and Amaya, E. 1996. Transgenic Xenopus embryos from sperm nuclear transplantations reveal FGF signaling requirements during gastrulation. Development 122: 3173-3183.
    • (1996) Development , vol.122 , pp. 3173-3183
    • Kroll, K.L.1    Amaya, E.2
  • 23
    • 0032957137 scopus 로고    scopus 로고
    • The specification of dorsal cell fates in the vertebrate central nervous system
    • Lee, K.J. and Jessell, T.M. 1999. The specification of dorsal cell fates in the vertebrate central nervous system. Annu. Rev. Neurosci. 22: 261-294.
    • (1999) Annu. Rev. Neurosci. , vol.22 , pp. 261-294
    • Lee, K.J.1    Jessell, T.M.2
  • 25
    • 0035983271 scopus 로고    scopus 로고
    • Search for enhancers: Teleost models in comparative genomic and transgenic analysis of cis regulatory elements
    • Muller, F., Blader, P., and Strahle, U. 2002. Search for enhancers: Teleost models in comparative genomic and transgenic analysis of cis regulatory elements. BioEssays 24: 564-572.
    • (2002) BioEssays , vol.24 , pp. 564-572
    • Muller, F.1    Blader, P.2    Strahle, U.3
  • 26
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts for long-range enhancers
    • Nobrega, M.A., Ovcharenko, I., Afzal, V., and Rubin, E.M. 2003. Scanning human gene deserts for long-range enhancers. Science 302: 413.
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 29
    • 0033782832 scopus 로고    scopus 로고
    • Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development
    • Peters, T., Dildrop, R., Ausmeier, K., and Rüther, U. 2000. Organization of mouse Iroquois homeobox genes in two clusters suggests a conserved regulation and function in vertebrate development. Genome Res. 10: 1453-1462.
    • (2000) Genome Res. , vol.10 , pp. 1453-1462
    • Peters, T.1    Dildrop, R.2    Ausmeier, K.3    Rüther, U.4
  • 31
    • 0038817801 scopus 로고    scopus 로고
    • Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters
    • Santini, S., Boore, J.L., and Meyer, A. 2003. Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. Genome Res. 13: 1111-1122.
    • (2003) Genome Res. , vol.13 , pp. 1111-1122
    • Santini, S.1    Boore, J.L.2    Meyer, A.3
  • 34
    • 0038613098 scopus 로고    scopus 로고
    • A global control region defines a chromosomal regulatory landscape containing the HoxD cluster
    • Spitz, F., Gonzalez, F., and Duboule, D. 2003. A global control region defines a chromosomal regulatory landscape containing the HoxD cluster. Cell 113: 405-417.
    • (2003) Cell , vol.113 , pp. 405-417
    • Spitz, F.1    Gonzalez, F.2    Duboule, D.3
  • 35
    • 0037266674 scopus 로고    scopus 로고
    • The role of gene duplication in the evolution and function of the vertebrate Dlx/distal-less bigene clusters
    • Sumiyama, K., Irvine, S.Q., and Ruddle, F.H. 2003. The role of gene duplication in the evolution and function of the vertebrate Dlx/distal-less bigene clusters. J. Struct. Funct. Genomics 3: 151-159.
    • (2003) J. Struct. Funct. Genomics , vol.3 , pp. 151-159
    • Sumiyama, K.1    Irvine, S.Q.2    Ruddle, F.H.3
  • 36
    • 0032821416 scopus 로고    scopus 로고
    • Expression of a zebrafish Iroquois homeobox gene, Ziro3, in the midline axial structures and central nervous system
    • Tan, J.T., Korzh, V., and Gong, Z. 1999. Expression of a zebrafish Iroquois homeobox gene, Ziro3, in the midline axial structures and central nervous system. Mech. Dev. 87: 165-168.
    • (1999) Mech. Dev. , vol.87 , pp. 165-168
    • Tan, J.T.1    Korzh, V.2    Gong, Z.3
  • 38
    • 0037389626 scopus 로고    scopus 로고
    • Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals
    • Uchikawa, M., Ishida, Y., Takemoto, T., Kamachi, Y., and Kondoh, H. 2003. Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals. Dev. Cell 4: 509-519.
    • (2003) Dev. Cell , vol.4 , pp. 509-519
    • Uchikawa, M.1    Ishida, Y.2    Takemoto, T.3    Kamachi, Y.4    Kondoh, H.5
  • 39
    • 0034950332 scopus 로고    scopus 로고
    • Expression of two novel zebrafish Iroquois homologues (ziro1 and ziro5) during early development of axial structures and central nervous system
    • Wang, X., Emelyanov, A., Speptsova-Friedrich, I., Korzh, V., and Gong, Z. 2001. Expression of two novel zebrafish Iroquois homologues (ziro1 and ziro5) during early development of axial structures and central nervous system. Mech. Dev. 105: 191-195.
    • (2001) Mech. Dev. , vol.105 , pp. 191-195
    • Wang, X.1    Emelyanov, A.2    Speptsova-Friedrich, I.3    Korzh, V.4    Gong, Z.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.