메뉴 건너뛰기




Volumn 9, Issue 11, 2011, Pages

De novo genesis of enhancers in vertebrates

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA FLANKING REGION; ENHANCER REGION; GENE DUPLICATION; GENE EXPRESSION; GENE LOSS; GENETIC ANALYSIS; GENETIC CODE; GENETIC CONSERVATION; GENETIC REGULATION; GENETIC VARIABILITY; HUMAN; MOLECULAR EVOLUTION; NONHUMAN; ORTHOLOGY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; TELEOST; VERTEBRATE; ANIMAL; BIOLOGY; EXON; GENE LOCUS; GENETICS; IN SITU HYBRIDIZATION; MAMMAL; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOUSE; NUCLEOTIDE SEQUENCE; REPORTER GENE; SMEGMAMORPHA; SYNTENY;

EID: 82455192847     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1001188     Document Type: Article
Times cited : (49)

References (63)
  • 1
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray G. A, (2007) The evolutionary significance of cis-regulatory mutations. Nat Rev Genet 8: 206-216.
    • (2007) Nat Rev Genet , vol.8 , pp. 206-216
    • Wray, G.A.1
  • 2
    • 46149104377 scopus 로고    scopus 로고
    • Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution
    • Carroll S. B, (2008) Evo-devo and an expanding evolutionary synthesis: a genetic theory of morphological evolution. Cell 134: 25-36.
    • (2008) Cell , vol.134 , pp. 25-36
    • Carroll, S.B.1
  • 3
    • 74549118236 scopus 로고    scopus 로고
    • Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
    • Chan Y. F, Marks M. E, Jones F. C, Villarreal G. J, Shapiro M. D, et al. (2010) Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327: 302-305.
    • (2010) Science , vol.327 , pp. 302-305
    • Chan, Y.F.1    Marks, M.E.2    Jones, F.C.3    Villarreal, G.J.4    Shapiro, M.D.5
  • 4
    • 0013065009 scopus 로고
    • The role of gene duplication in vertebrate evolution
    • In: ED Bittar N. B, editors
    • Ohno S, (1969) The role of gene duplication in vertebrate evolution. In: ED Bittar N. B, editors. The biological basis of medicine pp. 109-132.
    • (1969) The Biological Basis of Medicine , pp. 109-132
    • Ohno, S.1
  • 5
    • 13444304173 scopus 로고    scopus 로고
    • Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila
    • Gompel N, Prud'homme B, Wittkopp P. J, Kassner V. A, Carroll S. B, (2005) Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433: 481-487.
    • (2005) Nature , vol.433 , pp. 481-487
    • Gompel, N.1    Prud'homme, B.2    Wittkopp, P.J.3    Kassner, V.A.4    Carroll, S.B.5
  • 6
    • 34547461293 scopus 로고    scopus 로고
    • Emerging principles of regulatory evolution
    • Prud'homme B, Gompel N, Carroll S. B, (2007) Emerging principles of regulatory evolution. Proc Natl Acad Sci U S A 104 (Suppl 1): 8605-8612.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.SUPPL. 1 , pp. 8605-8612
    • Prud'homme, B.1    Gompel, N.2    Carroll, S.B.3
  • 7
    • 51149097366 scopus 로고    scopus 로고
    • Human-specific gain of function in a developmental enhancer
    • Prabhakar S, Visel A, Akiyama J. A, Shoukry M, Lewis K. D, et al. (2008) Human-specific gain of function in a developmental enhancer. Science 321: 1346-1350.
    • (2008) Science , vol.321 , pp. 1346-1350
    • Prabhakar, S.1    Visel, A.2    Akiyama, J.A.3    Shoukry, M.4    Lewis, K.D.5
  • 8
    • 72949110371 scopus 로고    scopus 로고
    • Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population
    • Rebeiz M, Pool J. E, Kassner V. A, Aquadro C. F, Carroll S. B, (2009) Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population. Science 326: 1663-1667.
    • (2009) Science , vol.326 , pp. 1663-1667
    • Rebeiz, M.1    Pool, J.E.2    Kassner, V.A.3    Aquadro, C.F.4    Carroll, S.B.5
  • 9
    • 79959825697 scopus 로고    scopus 로고
    • Morphological evolution caused by many subtle-effect substitutions in regulatory DNA
    • Frankel N, Erezyilmaz D. F, McGregor A. P, Wang S, Payre F, et al. (2011) Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. Nature 474: 598-603.
    • (2011) Nature , vol.474 , pp. 598-603
    • Frankel, N.1    Erezyilmaz, D.F.2    McGregor, A.P.3    Wang, S.4    Payre, F.5
  • 10
    • 79959944339 scopus 로고    scopus 로고
    • Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences
    • Rebeiz M, Jikomes N, Kassner V. A, Carroll S. B, (2011) Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences. Proc Natl Acad Sci U S A 108: 10036-10043.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 10036-10043
    • Rebeiz, M.1    Jikomes, N.2    Kassner, V.A.3    Carroll, S.B.4
  • 11
    • 33646928347 scopus 로고    scopus 로고
    • A distal enhancer and an ultraconserved exon are derived from a novel retroposon
    • Bejerano G, Lowe C. B, Ahituv N, King B, Siepel A, et al. (2006) A distal enhancer and an ultraconserved exon are derived from a novel retroposon. Nature 441: 87-90.
    • (2006) Nature , vol.441 , pp. 87-90
    • Bejerano, G.1    Lowe, C.B.2    Ahituv, N.3    King, B.4    Siepel, A.5
  • 13
    • 55549117831 scopus 로고    scopus 로고
    • Evolution of the mammalian transcription factor binding repertoire via transposable elements
    • Bourque G, Leong B, Vega V. B, Chen X, Lee Y. L, et al. (2008) Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res 18: 1752-1762.
    • (2008) Genome Res , vol.18 , pp. 1752-1762
    • Bourque, G.1    Leong, B.2    Vega, V.B.3    Chen, X.4    Lee, Y.L.5
  • 14
    • 77953062527 scopus 로고    scopus 로고
    • Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding
    • Schmidt D, Wilson M. D, Ballester B, Schwalie P. C, Brown G. D, et al. (2010) Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 328: 1036-1040.
    • (2010) Science , vol.328 , pp. 1036-1040
    • Schmidt, D.1    Wilson, M.D.2    Ballester, B.3    Schwalie, P.C.4    Brown, G.D.5
  • 16
    • 77956641239 scopus 로고    scopus 로고
    • ChIP-Seq identification of weakly conserved heart enhancers
    • Blow M. J, McCulley D. J, Li Z, Zhang T, Akiyama J. A, et al. (2010) ChIP-Seq identification of weakly conserved heart enhancers. Nat Genet 42: 806-810.
    • (2010) Nat Genet , vol.42 , pp. 806-810
    • Blow, M.J.1    McCulley, D.J.2    Li, Z.3    Zhang, T.4    Akiyama, J.A.5
  • 17
    • 0041677607 scopus 로고    scopus 로고
    • Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation
    • Romano L. A, Wray G. A, (2003) Conservation of Endo16 expression in sea urchins despite evolutionary divergence in both cis and trans-acting components of transcriptional regulation. Development 130: 4187-4199.
    • (2003) Development , vol.130 , pp. 4187-4199
    • Romano, L.A.1    Wray, G.A.2
  • 18
    • 34548690542 scopus 로고    scopus 로고
    • Functional architecture and evolution of transcriptional elements that drive gene coexpression
    • Brown C. D, Johnson D. S, Sidow A, (2007) Functional architecture and evolution of transcriptional elements that drive gene coexpression. Science 317: 1557-1560.
    • (2007) Science , vol.317 , pp. 1557-1560
    • Brown, C.D.1    Johnson, D.S.2    Sidow, A.3
  • 19
    • 78649716038 scopus 로고    scopus 로고
    • Nomadic enhancers: tissue-specific cis-regulatory elements of yellow have divergent genomic positions among Drosophila species
    • doi: 10.1371/journal.pgen.1001222
    • Kalay G, Wittkopp P. J, (2010) Nomadic enhancers: tissue-specific cis-regulatory elements of yellow have divergent genomic positions among Drosophila species. PLoS Genet 6: e1001222 doi:10.1371/journal.pgen.1001222.
    • (2010) PLoS Genet , vol.6
    • Kalay, G.1    Wittkopp, P.J.2
  • 20
    • 7244259101 scopus 로고    scopus 로고
    • Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
    • Jaillon O, Aury J-M, Brunet F, Petit J-L, Stange-Thomann N, et al. (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 431: 946-957.
    • (2004) Nature , vol.431 , pp. 946-957
    • Jaillon, O.1    Aury, J.-M.2    Brunet, F.3    Petit, J.-L.4    Stange-Thomann, N.5
  • 21
    • 79957599226 scopus 로고    scopus 로고
    • Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish
    • Mongin E, Auer T. O, Bourrat F, Gruhl F, Dewar K, et al. (2011) Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish. PLoS One 6: e19747.
    • (2011) PLoS One , vol.6
    • Mongin, E.1    Auer, T.O.2    Bourrat, F.3    Gruhl, F.4    Dewar, K.5
  • 22
    • 0036179204 scopus 로고    scopus 로고
    • The heat-inducible zebrafish hsp70 gene is expressed during normal lens development under non-stress conditions
    • Blechinger S. R, Evans T. G, Tang P. T, Kuwada J. Y, Warren J. T. J, et al. (2002) The heat-inducible zebrafish hsp70 gene is expressed during normal lens development under non-stress conditions. Mech Dev 112: 213-215.
    • (2002) Mech Dev , vol.112 , pp. 213-215
    • Blechinger, S.R.1    Evans, T.G.2    Tang, P.T.3    Kuwada, J.Y.4    Warren, J.T.J.5
  • 23
    • 0031694448 scopus 로고    scopus 로고
    • Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired
    • Brown S. A, Warburton D, Brown L. Y, Yu C. Y, Roeder E. R, et al. (1998) Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired. Nat Genet 20: 180-183.
    • (1998) Nat Genet , vol.20 , pp. 180-183
    • Brown, S.A.1    Warburton, D.2    Brown, L.Y.3    Yu, C.Y.4    Roeder, E.R.5
  • 24
    • 0032562603 scopus 로고    scopus 로고
    • Functional interaction of an axin homolog, conductin, with beta-catenin, APC, and GSK3beta
    • Behrens J, Jerchow B. A, Wurtele M, Grimm J, Asbrand C, et al. (1998) Functional interaction of an axin homolog, conductin, with beta-catenin, APC, and GSK3beta. Science 280: 596-599.
    • (1998) Science , vol.280 , pp. 596-599
    • Behrens, J.1    Jerchow, B.A.2    Wurtele, M.3    Grimm, J.4    Asbrand, C.5
  • 25
    • 0033840755 scopus 로고    scopus 로고
    • Abnormal polarization and axon outgrowth in retinal ganglion cells lacking the POU-domain transcription factor Brn-3b
    • Wang S. W, Gan L, Martin S. E, Klein W. H, (2000) Abnormal polarization and axon outgrowth in retinal ganglion cells lacking the POU-domain transcription factor Brn-3b. Mol Cell Neurosci 16: 141-156.
    • (2000) Mol Cell Neurosci , vol.16 , pp. 141-156
    • Wang, S.W.1    Gan, L.2    Martin, S.E.3    Klein, W.H.4
  • 26
    • 77950352433 scopus 로고    scopus 로고
    • Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons
    • Dong X, Navratilova P, Fredman D, Drivenes O, Becker T. S, et al. (2010) Exonic remnants of whole-genome duplication reveal cis-regulatory function of coding exons. Nucleic Acids Res 38: 1071-1085.
    • (2010) Nucleic Acids Res , vol.38 , pp. 1071-1085
    • Dong, X.1    Navratilova, P.2    Fredman, D.3    Drivenes, O.4    Becker, T.S.5
  • 27
    • 0030783250 scopus 로고    scopus 로고
    • A regulatory element within a coding exon modulates keratin 18 gene expression in transgenic mice
    • Neznanov N, Umezawa A, Oshima R. G, (1997) A regulatory element within a coding exon modulates keratin 18 gene expression in transgenic mice. J Biol Chem 272: 27549-27557.
    • (1997) J Biol Chem , vol.272 , pp. 27549-27557
    • Neznanov, N.1    Umezawa, A.2    Oshima, R.G.3
  • 28
    • 26444542927 scopus 로고    scopus 로고
    • Analysis of the CCR3 promoter reveals a regulatory region in exon 1 that binds GATA-1
    • Zimmermann N, Colyer J. L, Koch L. E, Rothenberg M. E, (2005) Analysis of the CCR3 promoter reveals a regulatory region in exon 1 that binds GATA-1. BMC Immunol 6: 7.
    • (2005) BMC Immunol , vol.6 , pp. 7
    • Zimmermann, N.1    Colyer, J.L.2    Koch, L.E.3    Rothenberg, M.E.4
  • 29
    • 33748425899 scopus 로고    scopus 로고
    • Positive transcriptional regulatory element located within exon 1 of elastin gene
    • Pierce R. A, Moore C. H, Arikan M. C, (2006) Positive transcriptional regulatory element located within exon 1 of elastin gene. Am J Physiol Lung Cell Mol Physiol 291: L391-L399.
    • (2006) Am J Physiol Lung Cell Mol Physiol , vol.291
    • Pierce, R.A.1    Moore, C.H.2    Arikan, M.C.3
  • 30
    • 53849094809 scopus 로고    scopus 로고
    • Ultraconserved coding regions outside the homeobox of mammalian Hox genes
    • Lin Z, Ma H, Nei M, (2008) Ultraconserved coding regions outside the homeobox of mammalian Hox genes. BMC Evol Biol 8: 260.
    • (2008) BMC Evol Biol , vol.8 , pp. 260
    • Lin, Z.1    Ma, H.2    Nei, M.3
  • 31
    • 58149512003 scopus 로고    scopus 로고
    • A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2
    • Tumpel S, Cambronero F, Sims C, Krumlauf R, Wiedemann L. M, (2008) A regulatory module embedded in the coding region of Hoxa2 controls expression in rhombomere 2. Proc Natl Acad Sci U S A 105: 20077-20082.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 20077-20082
    • Tumpel, S.1    Cambronero, F.2    Sims, C.3    Krumlauf, R.4    Wiedemann, L.M.5
  • 32
    • 66749176636 scopus 로고    scopus 로고
    • Conserved elements within open reading frames of mammalian Hox genes
    • Woltering J. M, Duboule D, (2009) Conserved elements within open reading frames of mammalian Hox genes. J Biol 8: 17.
    • (2009) J Biol , vol.8 , pp. 17
    • Woltering, J.M.1    Duboule, D.2
  • 33
    • 0028168856 scopus 로고
    • A codon-based model of nucleotide substitution for protein-coding DNA sequences
    • Goldman N, Yang Z, (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11: 725-736.
    • (1994) Mol Biol Evol , vol.11 , pp. 725-736
    • Goldman, N.1    Yang, Z.2
  • 34
    • 77957225928 scopus 로고    scopus 로고
    • The importance of being cis: evolution of orthologous fish and mammalian enhancer activity
    • Ritter D. I, Li Q, Kostka D, Pollard K. S, Guo S, et al. (2010) The importance of being cis: evolution of orthologous fish and mammalian enhancer activity. Mol Biol Evol 27: 2322-2332.
    • (2010) Mol Biol Evol , vol.27 , pp. 2322-2332
    • Ritter, D.I.1    Li, Q.2    Kostka, D.3    Pollard, K.S.4    Guo, S.5
  • 35
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar S, Hedges S. B, (1998) A molecular timescale for vertebrate evolution. Nature 392: 917-920.
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 36
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • ENCODE Project Consortium
    • Birney E, Stamatoyannopoulos J. A, Dutta A, Guigó R, ENCODE Project Consortium (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigó, R.4
  • 38
    • 60149091656 scopus 로고    scopus 로고
    • ChIP-seq accurately predicts tissue-specific activity of enhancers
    • Visel A, Blow M. J, Li Z, Zhang T, Akiyama J. A, et al. (2009) ChIP-seq accurately predicts tissue-specific activity of enhancers. Nature 457: 854-858.
    • (2009) Nature , vol.457 , pp. 854-858
    • Visel, A.1    Blow, M.J.2    Li, Z.3    Zhang, T.4    Akiyama, J.A.5
  • 39
    • 0031568805 scopus 로고    scopus 로고
    • The expression of the mouse Zic1, Zic2, and Zic3 gene suggests an essential role for Zic genes in body pattern formation
    • Nagai T, Aruga J, Takada S, Gunther T, Sporle R, et al. (1997) The expression of the mouse Zic1, Zic2, and Zic3 gene suggests an essential role for Zic genes in body pattern formation. Dev Biol 182: 299-313.
    • (1997) Dev Biol , vol.182 , pp. 299-313
    • Nagai, T.1    Aruga, J.2    Takada, S.3    Gunther, T.4    Sporle, R.5
  • 40
    • 77954960062 scopus 로고    scopus 로고
    • Phenotypic robustness conferred by apparently redundant transcriptional enhancers
    • Frankel N, Davis G. K, Vargas D, Wang S, Payre F, et al. (2010) Phenotypic robustness conferred by apparently redundant transcriptional enhancers. Nature 466: 490-493.
    • (2010) Nature , vol.466 , pp. 490-493
    • Frankel, N.1    Davis, G.K.2    Vargas, D.3    Wang, S.4    Payre, F.5
  • 41
    • 77956521381 scopus 로고    scopus 로고
    • Shadow enhancers foster robustness of Drosophila gastrulation
    • Perry M. W, Boettiger A. N, Bothma J. P, Levine M, (2010) Shadow enhancers foster robustness of Drosophila gastrulation. Curr Biol 20: 1562-1567.
    • (2010) Curr Biol , vol.20 , pp. 1562-1567
    • Perry, M.W.1    Boettiger, A.N.2    Bothma, J.P.3    Levine, M.4
  • 42
    • 0035986888 scopus 로고    scopus 로고
    • Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover
    • Dermitzakis E. T, Clark A. G, (2002) Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover. Mol Biol Evol 19: 1114-1121.
    • (2002) Mol Biol Evol , vol.19 , pp. 1114-1121
    • Dermitzakis, E.T.1    Clark, A.G.2
  • 43
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force A, Lynch M, Pickett F. B, Amores A, Yan Y. L, et al. (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151: 1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5
  • 44
    • 50649090652 scopus 로고    scopus 로고
    • De novo origination of a new protein-coding gene in Saccharomyces cerevisiae
    • Cai J, Zhao R, Jiang H, Wang W, (2008) De novo origination of a new protein-coding gene in Saccharomyces cerevisiae. Genetics 179: 487-496.
    • (2008) Genetics , vol.179 , pp. 487-496
    • Cai, J.1    Zhao, R.2    Jiang, H.3    Wang, W.4
  • 45
    • 33745585334 scopus 로고    scopus 로고
    • Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression
    • Levine M. T, Jones C. D, Kern A. D, Lindfors H. A, Begun D. J, (2006) Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression. Proc Natl Acad Sci U S A 103: 9935-9939.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 9935-9939
    • Levine, M.T.1    Jones, C.D.2    Kern, A.D.3    Lindfors, H.A.4    Begun, D.J.5
  • 46
    • 70349645640 scopus 로고    scopus 로고
    • Recent de novo origin of human protein-coding genes
    • Knowles D. G, McLysaght A, (2009) Recent de novo origin of human protein-coding genes. Genome Res 19: 1752-1759.
    • (2009) Genome Res , vol.19 , pp. 1752-1759
    • Knowles, D.G.1    McLysaght, A.2
  • 47
    • 70449132583 scopus 로고    scopus 로고
    • Combinatorial binding predicts spatio-temporal cis-regulatory activity
    • Zinzen R. P, Girardot C, Gagneur J, Braun M, Furlong E. E. M, (2009) Combinatorial binding predicts spatio-temporal cis-regulatory activity. Nature 462: 65-70.
    • (2009) Nature , vol.462 , pp. 65-70
    • Zinzen, R.P.1    Girardot, C.2    Gagneur, J.3    Braun, M.4    Furlong, E.E.M.5
  • 50
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
    • Smith B, Ashburner M, Rosse C, Bard J, Bug W, et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 25: 1251-1255.
    • (2007) Nat Biotechnol , vol.25 , pp. 1251-1255
    • Smith, B.1    Ashburner, M.2    Rosse, C.3    Bard, J.4    Bug, W.5
  • 51
    • 34247342594 scopus 로고    scopus 로고
    • Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome
    • doi:10.1371/journal.pbio.0050101
    • Venkatesh B, Kirkness E. F, Loh Y-H, Halpern A. L, Lee A. P, et al. (2007) Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome. PLoS Biol 5: e101 doi:10.1371/journal.pbio.0050101.
    • (2007) PLoS Biol , vol.5
    • Venkatesh, B.1    Kirkness, E.F.2    Loh, Y.-H.3    Halpern, A.L.4    Lee, A.P.5
  • 52
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P, (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 34: W609-W612.
    • (2006) Nucleic Acids Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 53
    • 79551634894 scopus 로고    scopus 로고
    • PHAST and RPHAST: phylogenetic analysis with space/time models
    • Hubisz M. J, Pollard K. S, Siepel A, (2011) PHAST and RPHAST: phylogenetic analysis with space/time models. Brief Bioinform 12: 41-51.
    • (2011) Brief Bioinform , vol.12 , pp. 41-51
    • Hubisz, M.J.1    Pollard, K.S.2    Siepel, A.3
  • 55
    • 0345158295 scopus 로고    scopus 로고
    • Medaka spalt acts as a target gene of hedgehog signaling
    • Koster R, Stick R, Loosli F, Wittbrodt J, (1997) Medaka spalt acts as a target gene of hedgehog signaling. Development 124: 3147-3156.
    • (1997) Development , vol.124 , pp. 3147-3156
    • Koster, R.1    Stick, R.2    Loosli, F.3    Wittbrodt, J.4
  • 56
    • 1642402987 scopus 로고    scopus 로고
    • Rapid chromosomal assignment of medaka mutants by bulked segregant analysis
    • Martinez-Morales J-R, Naruse K, Mitani H, Shima A, Wittbrodt J, (2004) Rapid chromosomal assignment of medaka mutants by bulked segregant analysis. Gene 329: 159-165.
    • (2004) Gene , vol.329 , pp. 159-165
    • Martinez-Morales, J.-R.1    Naruse, K.2    Mitani, H.3    Shima, A.4    Wittbrodt, J.5
  • 57
    • 34248559599 scopus 로고    scopus 로고
    • Gene splicing and mutagenesis by PCR-driven overlap extension
    • Heckman K. L, Pease L. R, (2007) Gene splicing and mutagenesis by PCR-driven overlap extension. Nat Protoc 2: 924-932.
    • (2007) Nat Protoc , vol.2 , pp. 924-932
    • Heckman, K.L.1    Pease, L.R.2
  • 59
    • 0036803294 scopus 로고    scopus 로고
    • I-SceI meganuclease mediates highly efficient transgenesis in fish
    • Thermes V, Grabher C, Ristoratore F, Bourrat F, Choulika A, et al. (2002) I-SceI meganuclease mediates highly efficient transgenesis in fish. Mech Dev 118: 91-98.
    • (2002) Mech Dev , vol.118 , pp. 91-98
    • Thermes, V.1    Grabher, C.2    Ristoratore, F.3    Bourrat, F.4    Choulika, A.5
  • 60
    • 0027227469 scopus 로고
    • The regulation of myogenin gene expression during the embryonic development of the mouse
    • Yee S. P, Rigby P. W, (1993) The regulation of myogenin gene expression during the embryonic development of the mouse. Genes Dev 7: 1277-1289.
    • (1993) Genes Dev , vol.7 , pp. 1277-1289
    • Yee, S.P.1    Rigby, P.W.2
  • 63
    • 2442707716 scopus 로고    scopus 로고
    • Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
    • Christoffels A, Koh E. G, Chia J. M, Brenner S, Aparicio S, et al. (2004) Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol Biol Evol 21: 1146-1151.
    • (2004) Mol Biol Evol , vol.21 , pp. 1146-1151
    • Christoffels, A.1    Koh, E.G.2    Chia, J.M.3    Brenner, S.4    Aparicio, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.