-
1
-
-
34250900982
-
Base-excision repair of oxidative DNA damage
-
David S.S., O'Shea V.L., Kundu S. Base-excision repair of oxidative DNA damage. Nature 2007, 447:941-950.
-
(2007)
Nature
, vol.447
, pp. 941-950
-
-
David, S.S.1
O'Shea, V.L.2
Kundu, S.3
-
3
-
-
84867466090
-
Oxidatively induced DNA damage: mechanisms, repair and disease
-
Dizdaroglu M. Oxidatively induced DNA damage: mechanisms, repair and disease. Cancer Letters 2012, 327:26-47.
-
(2012)
Cancer Letters
, vol.327
, pp. 26-47
-
-
Dizdaroglu, M.1
-
4
-
-
33847613569
-
Oxidative DNA damage repair in mammalian cells: a new perspective
-
Hazra T.K., Das A., Das S., Choudhury S., Kow Y.W., Roy R. Oxidative DNA damage repair in mammalian cells: a new perspective. DNA Repair 2007, 6:470-480.
-
(2007)
DNA Repair
, vol.6
, pp. 470-480
-
-
Hazra, T.K.1
Das, A.2
Das, S.3
Choudhury, S.4
Kow, Y.W.5
Roy, R.6
-
5
-
-
38049112778
-
Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells
-
Hegde M.L., Hazra T.K., Mitra S. Early steps in the DNA base excision/single-strand interruption repair pathway in mammalian cells. Cell Research 2008, 18:27-47.
-
(2008)
Cell Research
, vol.18
, pp. 27-47
-
-
Hegde, M.L.1
Hazra, T.K.2
Mitra, S.3
-
7
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8Å resolution
-
Luger K., Mader A.W., Richmond R.K., Sargent D.F., Richmond T.J. Crystal structure of the nucleosome core particle at 2.8Å resolution. Nature 1997, 389:251-260.
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mader, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
9
-
-
75749101495
-
Chromatin remodelling during development
-
Ho L., Crabtree G.R. Chromatin remodelling during development. Nature 2010, 463:474-484.
-
(2010)
Nature
, vol.463
, pp. 474-484
-
-
Ho, L.1
Crabtree, G.R.2
-
10
-
-
80052970429
-
Mechanisms for ATP-dependent chromatin remodelling: the means to the end
-
Flaus A., Owen-Hughes T. Mechanisms for ATP-dependent chromatin remodelling: the means to the end. FEBS Journal 2011, 278:3579-3595.
-
(2011)
FEBS Journal
, vol.278
, pp. 3579-3595
-
-
Flaus, A.1
Owen-Hughes, T.2
-
11
-
-
79951969175
-
Histone chaperones: modulators of chromatin marks
-
Avvakumov N., Nourani A., Cote J. Histone chaperones: modulators of chromatin marks. Molecular Cell 2011, 41:502-514.
-
(2011)
Molecular Cell
, vol.41
, pp. 502-514
-
-
Avvakumov, N.1
Nourani, A.2
Cote, J.3
-
13
-
-
34147162118
-
ATP-dependent chromatin remodeling factors and DNA damage repair
-
Osley M.A., Tsukuda T., Nickoloff J.A. ATP-dependent chromatin remodeling factors and DNA damage repair. Mutation Research 2007, 618:65-80.
-
(2007)
Mutation Research
, vol.618
, pp. 65-80
-
-
Osley, M.A.1
Tsukuda, T.2
Nickoloff, J.A.3
-
15
-
-
84872398729
-
Transcription-associated histone modifications and cryptic transcription
-
Smolle M., Workman J.L. Transcription-associated histone modifications and cryptic transcription. Biochimica et Biophysica Acta 2013, 1829:84-97.
-
(2013)
Biochimica et Biophysica Acta
, vol.1829
, pp. 84-97
-
-
Smolle, M.1
Workman, J.L.2
-
16
-
-
34548239142
-
ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes
-
Menoni H., Gasparutto D., Hamiche A., Cadet J., Dimitrov S., Bouvet P., Angelov D. ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes. Molecular and Cellular Biology 2007, 27:5949-5956.
-
(2007)
Molecular and Cellular Biology
, vol.27
, pp. 5949-5956
-
-
Menoni, H.1
Gasparutto, D.2
Hamiche, A.3
Cadet, J.4
Dimitrov, S.5
Bouvet, P.6
Angelov, D.7
-
17
-
-
84855878370
-
Base excision repair of 8-oxoG in dinucleosomes
-
Menoni H., Shukla M.S., Gerson V., Dimitrov S., Angelov D. Base excision repair of 8-oxoG in dinucleosomes. Nucleic Acids Research 2012, 40:692-700.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 692-700
-
-
Menoni, H.1
Shukla, M.S.2
Gerson, V.3
Dimitrov, S.4
Angelov, D.5
-
18
-
-
34547850642
-
Different structural states in oligonucleosomes are required for early versus late steps of base excision repair
-
Nakanishi S., Prasad R., Wilson S.H., Smerdon M. Different structural states in oligonucleosomes are required for early versus late steps of base excision repair. Nucleic Acids Research 2007, 35:4313-4321.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 4313-4321
-
-
Nakanishi, S.1
Prasad, R.2
Wilson, S.H.3
Smerdon, M.4
-
19
-
-
84867452253
-
Pathways for repairing and tolerating the spectrum of oxidative DNA lesions
-
Berquist B.R., Wilson D.M. Pathways for repairing and tolerating the spectrum of oxidative DNA lesions. Cancer Letters 2012, 327:61-72.
-
(2012)
Cancer Letters
, vol.327
, pp. 61-72
-
-
Berquist, B.R.1
Wilson, D.M.2
-
20
-
-
37549004382
-
Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1
-
Prasad A., Wallace S.S., Pederson D.S. Initiation of base excision repair of oxidative lesions in nucleosomes by the human, bifunctional DNA glycosylase NTH1. Molecular and Cellular Biology 2007, 27:8442-8453.
-
(2007)
Molecular and Cellular Biology
, vol.27
, pp. 8442-8453
-
-
Prasad, A.1
Wallace, S.S.2
Pederson, D.S.3
-
21
-
-
83255192188
-
Nucleosome disruption by DNA ligase III-XRCC1 promotes efficient base excision repair
-
Odell I.D., Barbour J.E., Murphy D.L., Della-Maria J.A., Sweasy J.B., Tomkinson A.E., Wallace S.S., Pederson D.S. Nucleosome disruption by DNA ligase III-XRCC1 promotes efficient base excision repair. Molecular and Cellular Biology 2011, 31:4623-4632.
-
(2011)
Molecular and Cellular Biology
, vol.31
, pp. 4623-4632
-
-
Odell, I.D.1
Barbour, J.E.2
Murphy, D.L.3
Della-Maria, J.A.4
Sweasy, J.B.5
Tomkinson, A.E.6
Wallace, S.S.7
Pederson, D.S.8
-
22
-
-
0028791330
-
Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation
-
Polach K.J., Widom J. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. Journal of Molecular Biology 1995, 254:130-149.
-
(1995)
Journal of Molecular Biology
, vol.254
, pp. 130-149
-
-
Polach, K.J.1
Widom, J.2
-
23
-
-
0034598944
-
Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites
-
Anderson J.D., Widom J. Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites. Journal of Molecular Biology 2000, 296:979-987.
-
(2000)
Journal of Molecular Biology
, vol.296
, pp. 979-987
-
-
Anderson, J.D.1
Widom, J.2
-
24
-
-
0032493667
-
Evidence that partial unwrapping of DNA from nucleosomes facilitates the binding of heat shock factor following DNA replication in yeast
-
Geraghty D.S., Sucic H.B., Chen J., Pederson D.S. Evidence that partial unwrapping of DNA from nucleosomes facilitates the binding of heat shock factor following DNA replication in yeast. Journal of Biological Chemistry 1998, 273:20463-20472.
-
(1998)
Journal of Biological Chemistry
, vol.273
, pp. 20463-20472
-
-
Geraghty, D.S.1
Sucic, H.B.2
Chen, J.3
Pederson, D.S.4
-
25
-
-
75149158767
-
Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1
-
Odell I.D., Newick K., Heintz N.H., Wallace S.S., Pederson D.S. Non-specific DNA binding interferes with the efficient excision of oxidative lesions from chromatin by the human DNA glycosylase, NEIL1. DNA Repair 2010, 9:134-143.
-
(2010)
DNA Repair
, vol.9
, pp. 134-143
-
-
Odell, I.D.1
Newick, K.2
Heintz, N.H.3
Wallace, S.S.4
Pederson, D.S.5
-
26
-
-
38349143342
-
Accumulation of oxidatively induced DNA damage in human breast cancer cell lines following treatment with hydrogen peroxide
-
Nyaga S.G., Jaruga P., Lohani A., Dizdaroglu M., Evans M.K. Accumulation of oxidatively induced DNA damage in human breast cancer cell lines following treatment with hydrogen peroxide. Cell Cycle 2007, 6:1472-1478.
-
(2007)
Cell Cycle
, vol.6
, pp. 1472-1478
-
-
Nyaga, S.G.1
Jaruga, P.2
Lohani, A.3
Dizdaroglu, M.4
Evans, M.K.5
-
28
-
-
79960717668
-
Dynamics of nucleosome invasion by DNA binding proteins
-
Tims H.S., Gurunathan K., Levitus M., Widom J. Dynamics of nucleosome invasion by DNA binding proteins. Journal of Molecular Biology 2011, 411(2):430-448.
-
(2011)
Journal of Molecular Biology
, vol.411
, Issue.2
, pp. 430-448
-
-
Tims, H.S.1
Gurunathan, K.2
Levitus, M.3
Widom, J.4
-
29
-
-
0032555571
-
Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue
-
Ikeda S., Biswas T., Roy R., Izumi T., Boldogh I., Kurosky A., Sarker A.H., Seki S., Mitra S. Purification and characterization of human NTH1, a homolog of Escherichia coli endonuclease III. Direct identification of Lys-212 as the active nucleophilic residue. Journal of Biological Chemistry 1998, 273:21585-21593.
-
(1998)
Journal of Biological Chemistry
, vol.273
, pp. 21585-21593
-
-
Ikeda, S.1
Biswas, T.2
Roy, R.3
Izumi, T.4
Boldogh, I.5
Kurosky, A.6
Sarker, A.H.7
Seki, S.8
Mitra, S.9
-
30
-
-
0037984361
-
Substrate specificity of human endonuclease III (hNTH1). effect of human APE1 on hNTH1 activity
-
Marenstein D.R., Chan M.K., Altamirano A., Basu A.K., Boorstein R.J., Cunningham R.P., Teebor G.W. Substrate specificity of human endonuclease III (hNTH1). effect of human APE1 on hNTH1 activity. Journal of Biological Chemistry 2003, 278:9005-9012.
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 9005-9012
-
-
Marenstein, D.R.1
Chan, M.K.2
Altamirano, A.3
Basu, A.K.4
Boorstein, R.J.5
Cunningham, R.P.6
Teebor, G.W.7
-
31
-
-
0348010372
-
In vitro and in vivo dimerization of human endonuclease III stimulates its activity
-
Liu X., Choudhury S., Roy R. In vitro and in vivo dimerization of human endonuclease III stimulates its activity. Journal of Biological Chemistry 2003, 278:50061-50069.
-
(2003)
Journal of Biological Chemistry
, vol.278
, pp. 50061-50069
-
-
Liu, X.1
Choudhury, S.2
Roy, R.3
-
32
-
-
34247133810
-
Rapid determination of the active fraction of DNA repair glycosylases: a novel fluorescence assay for trapped intermediates
-
Blaisdell J.O., Wallace S.S. Rapid determination of the active fraction of DNA repair glycosylases: a novel fluorescence assay for trapped intermediates. Nucleic Acids Research 2007, 35:1601-1611.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 1601-1611
-
-
Blaisdell, J.O.1
Wallace, S.S.2
-
33
-
-
11444262202
-
Rapid spontaneous accessibility of nucleosomal DNA
-
Li G., Levitus M., Bustamante C., Widom J. Rapid spontaneous accessibility of nucleosomal DNA. Nature Structural & Molecular Biology 2005, 12:46-53.
-
(2005)
Nature Structural & Molecular Biology
, vol.12
, pp. 46-53
-
-
Li, G.1
Levitus, M.2
Bustamante, C.3
Widom, J.4
-
34
-
-
0642315208
-
Transient-state kinetic analysis of enzyme reaction pathways
-
Johnson K.A. Transient-state kinetic analysis of enzyme reaction pathways. Enzymes 1992, 20:1-61.
-
(1992)
Enzymes
, vol.20
, pp. 1-61
-
-
Johnson, K.A.1
-
35
-
-
0015177581
-
Transients and relaxation kinetics of enzyme reactions
-
Gutfreund H. Transients and relaxation kinetics of enzyme reactions. Annual Review of Biochemistry 1971, 40:315-344.
-
(1971)
Annual Review of Biochemistry
, vol.40
, pp. 315-344
-
-
Gutfreund, H.1
-
36
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary P.T., Widom J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. Journal of Molecular Biology 1998, 276:19-42.
-
(1998)
Journal of Molecular Biology
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
37
-
-
0029928550
-
Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
-
Flaus A., Luger K., Tan S., Richmond T.J. Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proceedings of the National Academy of Sciences of the United States of America 1996, 93:1370-1375.
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, pp. 1370-1375
-
-
Flaus, A.1
Luger, K.2
Tan, S.3
Richmond, T.J.4
-
40
-
-
14744270719
-
Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer
-
Tomschik M., Zheng H., van Holde K., Zlatanova J., Leuba S.H. Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:3278-3283.
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, pp. 3278-3283
-
-
Tomschik, M.1
Zheng, H.2
van Holde, K.3
Zlatanova, J.4
Leuba, S.H.5
-
41
-
-
59849116500
-
Nucleosome dynamics as studied by single-pair fluorescence resonance energy transfer: a reevaluation
-
Tomschik M., van Holde K., Zlatanova J. Nucleosome dynamics as studied by single-pair fluorescence resonance energy transfer: a reevaluation. Journal of Fluorescence 2009, 19:53-62.
-
(2009)
Journal of Fluorescence
, vol.19
, pp. 53-62
-
-
Tomschik, M.1
van Holde, K.2
Zlatanova, J.3
-
42
-
-
77957252758
-
Crystal structures of nucleosome core particles containing the '601' strong positioning sequence
-
Vasudevan D., Chua E.Y., Davey C.A. Crystal structures of nucleosome core particles containing the '601' strong positioning sequence. Journal of Molecular Biology 2010, 403:1-10.
-
(2010)
Journal of Molecular Biology
, vol.403
, pp. 1-10
-
-
Vasudevan, D.1
Chua, E.Y.2
Davey, C.A.3
-
43
-
-
70349765673
-
A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation
-
Neumann H., Hancock S.M., Buning R., Routh A., Chapman L., Somers J., Owen-Hughes T., van Noort J., Rhodes D., Chin J.W. A method for genetically installing site-specific acetylation in recombinant histones defines the effects of H3 K56 acetylation. Molecular Cell 2009, 36:153-163.
-
(2009)
Molecular Cell
, vol.36
, pp. 153-163
-
-
Neumann, H.1
Hancock, S.M.2
Buning, R.3
Routh, A.4
Chapman, L.5
Somers, J.6
Owen-Hughes, T.7
van Noort, J.8
Rhodes, D.9
Chin, J.W.10
-
44
-
-
84869067974
-
Regulation of the nucleosome unwrapping rate controls DNA accessibility
-
North J.A., Shimko J.C., Javaid S., Mooney A.M., Shoffner M.A., Rose S.D., Bundschuh R., Fishel R., Ottesen J.J., Poirier M.G. Regulation of the nucleosome unwrapping rate controls DNA accessibility. Nucleic Acids Research 2012, 40:10215-10227.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 10215-10227
-
-
North, J.A.1
Shimko, J.C.2
Javaid, S.3
Mooney, A.M.4
Shoffner, M.A.5
Rose, S.D.6
Bundschuh, R.7
Fishel, R.8
Ottesen, J.J.9
Poirier, M.G.10
-
45
-
-
84864447350
-
Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics
-
Ye Y., Stahley M.R., Xu J., Friedman J.I., Sun Y., McKnight J.N., Gray J.J., Bowman G.D., Stivers J.T. Enzymatic excision of uracil residues in nucleosomes depends on the local DNA structure and dynamics. Biochemistry 2012, 51:6028-6038.
-
(2012)
Biochemistry
, vol.51
, pp. 6028-6038
-
-
Ye, Y.1
Stahley, M.R.2
Xu, J.3
Friedman, J.I.4
Sun, Y.5
McKnight, J.N.6
Gray, J.J.7
Bowman, G.D.8
Stivers, J.T.9
-
46
-
-
59649112972
-
High-resolution dynamic mapping of histone-DNA interactions in a nucleosome
-
Hall M.A., Shundrovsky A., Bai L., Fulbright R.M., Lis J.T., Wang M.D. High-resolution dynamic mapping of histone-DNA interactions in a nucleosome. Nature Structural & Molecular Biology 2009, 16:124-129.
-
(2009)
Nature Structural & Molecular Biology
, vol.16
, pp. 124-129
-
-
Hall, M.A.1
Shundrovsky, A.2
Bai, L.3
Fulbright, R.M.4
Lis, J.T.5
Wang, M.D.6
-
47
-
-
0037133684
-
Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA
-
Hazra T.K., Izumi T., Boldogh I., Imhoff B., Kow Y.W., Jaruga P., Dizdaroglu M., Mitra S. Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA. Proceedings of the National Academy of Sciences of the United States of America 2002, 99:3523-3528.
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, pp. 3523-3528
-
-
Hazra, T.K.1
Izumi, T.2
Boldogh, I.3
Imhoff, B.4
Kow, Y.W.5
Jaruga, P.6
Dizdaroglu, M.7
Mitra, S.8
-
48
-
-
77952580830
-
RPA physically interacts with the human DNA glycosylase NEIL1 to regulate excision of oxidative DNA base damage in primer-template structures
-
Theriot C.A., Hegde M.L., Hazra T.K., Mitra S. RPA physically interacts with the human DNA glycosylase NEIL1 to regulate excision of oxidative DNA base damage in primer-template structures. DNA Repair 2010, 9:643-652.
-
(2010)
DNA Repair
, vol.9
, pp. 643-652
-
-
Theriot, C.A.1
Hegde, M.L.2
Hazra, T.K.3
Mitra, S.4
-
49
-
-
41249094475
-
Interaction of the human DNA glycosylase NEIL1 with proliferating cell nuclear antigen. The potential for replication-associated repair of oxidized bases in mammalian genomes
-
Dou H., Theriot C.A., Das A., Hegde M.L., Matsumoto Y., Boldogh I., Hazra T.K., Bhakat K.K., Mitra S. Interaction of the human DNA glycosylase NEIL1 with proliferating cell nuclear antigen. The potential for replication-associated repair of oxidized bases in mammalian genomes. Journal of Biological Chemistry 2008, 283:3130-3140.
-
(2008)
Journal of Biological Chemistry
, vol.283
, pp. 3130-3140
-
-
Dou, H.1
Theriot, C.A.2
Das, A.3
Hegde, M.L.4
Matsumoto, Y.5
Boldogh, I.6
Hazra, T.K.7
Bhakat, K.K.8
Mitra, S.9
-
50
-
-
79953176665
-
Preferential repair of oxidized base damage in the transcribed genes of mammalian cells
-
Banerjee D., Mandal S.M., Das A., Hegde M.L., Das S., Bhakat K.K., Boldogh I., Sarkar P.S., Mitra S., Hazra T.K. Preferential repair of oxidized base damage in the transcribed genes of mammalian cells. Journal of Biological Chemistry 2011, 286:6006-6016.
-
(2011)
Journal of Biological Chemistry
, vol.286
, pp. 6006-6016
-
-
Banerjee, D.1
Mandal, S.M.2
Das, A.3
Hegde, M.L.4
Das, S.5
Bhakat, K.K.6
Boldogh, I.7
Sarkar, P.S.8
Mitra, S.9
Hazra, T.K.10
-
51
-
-
35848958821
-
Chromatin remodeling: insights and intrigue from single-molecule studies
-
Cairns B.R. Chromatin remodeling: insights and intrigue from single-molecule studies. Nature Structural & Molecular Biology 2007, 14:989-996.
-
(2007)
Nature Structural & Molecular Biology
, vol.14
, pp. 989-996
-
-
Cairns, B.R.1
|