-
1
-
-
0008242366
-
Nucleosome and chromatin structure
-
(eds. Eligin, S.C.R. & Workman, J.L.) Oxford Univ. Press, Oxford
-
Richmond, T. & Widom, J. Nucleosome and chromatin structure. In Chromatin Structure and Gene Expression (eds. Eligin, S.C.R. & Workman, J.L.) (Oxford Univ. Press, Oxford. 2000).
-
(2000)
Chromatin Structure and Gene Expression
-
-
Richmond, T.1
Widom, J.2
-
2
-
-
0037992395
-
The structure of DNA in the nucleosome core
-
Richmond, T.J. & Davey, C.A. The structure of DNA in the nucleosome core. Nature 423, 145-150 (2003).
-
(2003)
Nature
, vol.423
, pp. 145-150
-
-
Richmond, T.J.1
Davey, C.A.2
-
3
-
-
0033529565
-
Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
-
Kornberg, R.D. & Lorch, Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98, 285-294 (1999).
-
(1999)
Cell
, vol.98
, pp. 285-294
-
-
Kornberg, R.D.1
Lorch, Y.2
-
4
-
-
85015069067
-
Controlling the double helix
-
Felsenfeld, G. & Groudine, M. Controlling the double helix. Nature 421, 448-453 (2003).
-
(2003)
Nature
, vol.421
, pp. 448-453
-
-
Felsenfeld, G.1
Groudine, M.2
-
5
-
-
0030581149
-
Chromatin unfolds
-
Felsenfeld, G. Chromatin unfolds. Cell 86, 13-19 (1996).
-
(1996)
Cell
, vol.86
, pp. 13-19
-
-
Felsenfeld, G.1
-
6
-
-
0842324785
-
The nucleosome: From genomic organization to genomic regulation
-
Khorasanizadeh, S. The nucleosome: from genomic organization to genomic regulation. Cell 116, 259-272 (2004).
-
(2004)
Cell
, vol.116
, pp. 259-272
-
-
Khorasanizadeh, S.1
-
7
-
-
1542328273
-
Nucleosome remodeling: One mechanism, many phenomena?
-
Langst, G. & Becker, P.B. Nucleosome remodeling: one mechanism, many phenomena? Biochim. Biophys. Acta 1677, 58-63 (2004).
-
(2004)
Biochim. Biophys. Acta
, vol.1677
, pp. 58-63
-
-
Langst, G.1
Becker, P.B.2
-
8
-
-
0032742874
-
ATP-dependent chromatin remodelling: SWI/SNF and Co. are on the job
-
Muchardt, C. & Yaniv, M. ATP-dependent chromatin remodelling: SWI/SNF and Co. are on the job. J. Mol. Biol. 293, 187-198 (1999).
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 187-198
-
-
Muchardt, C.1
Yaniv, M.2
-
9
-
-
0037154963
-
Cooperation between complexes that regulate chromatin structure and transcription
-
Narlikar, G.J., Fan, H.Y. & Kingston, R.E. Cooperation between complexes that regulate chromatin structure and transcription. Cell 108, 475-487 (2002).
-
(2002)
Cell
, vol.108
, pp. 475-487
-
-
Narlikar, G.J.1
Fan, H.Y.2
Kingston, R.E.3
-
10
-
-
0034131012
-
Recruitment of chromatin remodeling machines
-
Peterson, C.L. & Logie, C. Recruitment of chromatin remodeling machines. J. Cell. Biochem. 78, 179-185 (2000).
-
(2000)
J. Cell. Biochem.
, vol.78
, pp. 179-185
-
-
Peterson, C.L.1
Logie, C.2
-
11
-
-
0028791330
-
Mechanism of protein access to specific DNA sequences in chromatin: A dynamic equilibrium model for gene regulation
-
Polach, K.J. & Widom, J. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. J. Mol. Biol. 254, 130-149 (1995).
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 130-149
-
-
Polach, K.J.1
Widom, J.2
-
12
-
-
0034598944
-
Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites
-
Anderson, J.D. & Widom, J. Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites. J. Mol. Biol. 296, 979-987 (2000).
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 979-987
-
-
Anderson, J.D.1
Widom, J.2
-
13
-
-
0026687952
-
Fluorescence resonance energy transfer and nucleic acids
-
Clegg, R.M. Fluorescence resonance energy transfer and nucleic acids. Methods Enzymol. 211, 353-388 (1992).
-
(1992)
Methods Enzymol.
, vol.211
, pp. 353-388
-
-
Clegg, R.M.1
-
14
-
-
3542998667
-
Nucleosomes facilitate their own invasion
-
Li, G. & Widom, J. Nucleosomes facilitate their own invasion. Nat. Struct. Mol. Biol. 11, 763-769 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 763-769
-
-
Li, G.1
Widom, J.2
-
15
-
-
0003699033
-
-
Addison-Wesley, Reading, Massachusetts, USA
-
Feynman, R.P., Leighton, R.B. & Sands, M. The Feynman Lectures on Physics (Addison-Wesley, Reading, Massachusetts, USA, 1963).
-
(1963)
The Feynman Lectures on Physics
-
-
Feynman, R.P.1
Leighton, R.B.2
Sands, M.3
-
16
-
-
0037512311
-
Distinct strategies to make nucleosomal DNA accessible
-
Fan, H.Y., He, X., Kingston, R.E. & Narlikar, G.J. Distinct strategies to make nucleosomal DNA accessible. Mol. Cell 11, 1311-1322 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 1311-1322
-
-
Fan, H.Y.1
He, X.2
Kingston, R.E.3
Narlikar, G.J.4
-
17
-
-
0037292355
-
SWI/SNF unwraps, slides, and rewraps the nucleosome
-
Kassabov, S.R., Zhang, B., Persinger, J. & Bartholomew, B. SWI/SNF unwraps, slides, and rewraps the nucleosome. Mol. Cell 11, 391-403 (2003).
-
(2003)
Mol. Cell
, vol.11
, pp. 391-403
-
-
Kassabov, S.R.1
Zhang, B.2
Persinger, J.3
Bartholomew, B.4
-
18
-
-
0031578809
-
Coupled-enzymatic assays for the rate and mechanism of DNA site exposure in a nucleosome
-
Protacio, R.U., Polach, K.J. & Widom, J. Coupled-enzymatic assays for the rate and mechanism of DNA site exposure in a nucleosome. J. Mol. Biol. 274, 708-721 (1997).
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 708-721
-
-
Protacio, R.U.1
Polach, K.J.2
Widom, J.3
-
19
-
-
0032555119
-
Kinetics of conformational fluctuations in DNA hairpin-loops
-
Bonnet, G., Krichevsky, O. & Libchaber, A. Kinetics of conformational fluctuations in DNA hairpin-loops. Proc. Natl. Acad. Sci. USA 95, 8602-8606 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8602-8606
-
-
Bonnet, G.1
Krichevsky, O.2
Libchaber, A.3
-
20
-
-
0037154114
-
Biological and chemical applications of fluorescence correlation spectroscopy: A review
-
Hess, S.T., Huang, S., Heikal, A.A. & Webb, W.W. Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry 41, 697-705 (2002).
-
(2002)
Biochemistry
, vol.41
, pp. 697-705
-
-
Hess, S.T.1
Huang, S.2
Heikal, A.A.3
Webb, W.W.4
-
21
-
-
0036175642
-
Fluorescence correlation spectroscopy: The technique and its applications
-
Krichevsky, O. & Bonnet, G. Fluorescence correlation spectroscopy: the technique and its applications. Rep. Prog. Phys. 65, 251-297 (2002).
-
(2002)
Rep. Prog. Phys.
, vol.65
, pp. 251-297
-
-
Krichevsky, O.1
Bonnet, G.2
-
22
-
-
0037057630
-
Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase
-
Ha, T. et al. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase. Nature 419, 638-641 (2002).
-
(2002)
Nature
, vol.419
, pp. 638-641
-
-
Ha, T.1
-
23
-
-
3042579602
-
How do site-specific DNA-binding proteins find their targets?
-
Halford, S.E. & Marko, J.F. How do site-specific DNA-binding proteins find their targets? Nucleic Acids Res. 32, 3040-3052 (2004).
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 3040-3052
-
-
Halford, S.E.1
Marko, J.F.2
-
24
-
-
0024531901
-
Facilitated target location in biological systems
-
von Hippel, P.H. & Berg, O.G. Facilitated target location in biological systems. J. Biol. Chem. 264, 675-678 (1989).
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 675-678
-
-
Von Hippel, P.H.1
Berg, O.G.2
-
25
-
-
0029841339
-
Remodeling the chromatin structure of a nucleosome array by transcription factor-targeted trans-displacement of histones
-
Owen-Hughes, T. & Workman, J.L. Remodeling the chromatin structure of a nucleosome array by transcription factor-targeted trans-displacement of histones. EMBO J. 15, 4702-4712 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 4702-4712
-
-
Owen-Hughes, T.1
Workman, J.L.2
-
26
-
-
0029826906
-
Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex
-
Owen-Hughes, T., Utley, R.T., Cote, J., Peterson, C.L. & Workman, J.L. Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex. Science 273, 513-516 (1996).
-
(1996)
Science
, vol.273
, pp. 513-516
-
-
Owen-Hughes, T.1
Utley, R.T.2
Cote, J.3
Peterson, C.L.4
Workman, J.L.5
-
27
-
-
0030782468
-
Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays
-
Logie, C. & Peterson, C.L. Catalytic activity of the yeast SWI/SNF complex on reconstituted nucleosome arrays. EMBO J. 16, 6772-6782 (1997).
-
(1997)
EMBO J.
, vol.16
, pp. 6772-6782
-
-
Logie, C.1
Peterson, C.L.2
-
28
-
-
0035093560
-
Computational modeling predicts the structure and dynamics of chromatin fiber
-
Beard, D.A. & Schlick, T. Computational modeling predicts the structure and dynamics of chromatin fiber. Structure 9, 105-114 (2001).
-
(2001)
Structure
, vol.9
, pp. 105-114
-
-
Beard, D.A.1
Schlick, T.2
-
29
-
-
0031831516
-
Structure, dynamics, and function of chromatin in vitro
-
Widom, J. Structure, dynamics, and function of chromatin in vitro. Annu. Rev. Biophys. Biomol. Struct. 27, 285-327 (1998).
-
(1998)
Annu. Rev. Biophys. Biomol. Struct.
, vol.27
, pp. 285-327
-
-
Widom, J.1
-
30
-
-
0032488030
-
Chromatin structure: Linking structure to function with histone H1
-
Widom, J. Chromatin structure: linking structure to function with histone H1. Curr. Biol. 8, R788-R791 (1998).
-
(1998)
Curr. Biol.
, vol.8
-
-
Widom, J.1
-
31
-
-
0024489155
-
Toward a unified model of chromatin folding
-
Widom, J. Toward a unified model of chromatin folding. Annu. Rev. Biophys. Biophys. Chem. 18, 365-395 (1989).
-
(1989)
Annu. Rev. Biophys. Biophys. Chem.
, vol.18
, pp. 365-395
-
-
Widom, J.1
-
32
-
-
0030726678
-
Gene activation at a distance and telomeric silencing are not affected by yeast histone H1
-
Escher, D. & Schaffner, W. Gene activation at a distance and telomeric silencing are not affected by yeast histone H1. Mol. Gen. Genet. 256, 456-461 (1997).
-
(1997)
Mol. Gen. Genet.
, vol.256
, pp. 456-461
-
-
Escher, D.1
Schaffner, W.2
-
33
-
-
0032571258
-
The biochemical and phenotypic characterization of Hho1p, the putative linker histone H1 of Saccharomyces cerevisiae
-
Patterton, H.G., Landel, C.C., Landsman, D., Peterson, C.L. & Simpson, R.T. The biochemical and phenotypic characterization of Hho1p, the putative linker histone H1 of Saccharomyces cerevisiae. J. Biol. Chem. 273, 7268-7276 (1998).
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 7268-7276
-
-
Patterton, H.G.1
Landel, C.C.2
Landsman, D.3
Peterson, C.L.4
Simpson, R.T.5
-
34
-
-
0035477211
-
Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin
-
Freidkin, I. & Katcoff, D.J. Specific distribution of the Saccharomyces cerevisiae linker histone homolog HHO1p in the chromatin. Nucleic Acids Res. 29, 4043-4051 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4043-4051
-
-
Freidkin, I.1
Katcoff, D.J.2
-
35
-
-
2342518189
-
Spontaneous sharp bending of double-stranded DNA
-
Cloutier, T.E. & Widom, J. Spontaneous sharp bending of double-stranded DNA. Mol. Cell 14, 355-362 (2004).
-
(2004)
Mol. Cell
, vol.14
, pp. 355-362
-
-
Cloutier, T.E.1
Widom, J.2
-
36
-
-
0035691979
-
Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity
-
Narlikar, G.J., Phelan, M.L. & Kingston, R.E. Generation and interconversion of multiple distinct nucleosomal states as a mechanism for catalyzing chromatin fluidity. Mol. Cell 8, 1219-1230 (2001).
-
(2001)
Mol. Cell
, vol.8
, pp. 1219-1230
-
-
Narlikar, G.J.1
Phelan, M.L.2
Kingston, R.E.3
-
37
-
-
0026006495
-
Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
-
Shermoen, A.W. & O'Farrell, P.H. Progression of the cell cycle through mitosis leads to abortion of nascent transcripts. Cell 67, 303-310 (1991).
-
(1991)
Cell
, vol.67
, pp. 303-310
-
-
Shermoen, A.W.1
O'Farrell, P.H.2
-
38
-
-
1942489758
-
Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning
-
Thastrom, A., Bingham, L.M. & Widom, J. Nucleosomal locations of dominant DNA sequence motifs for histone-DNA interactions and nucleosome positioning. J. Mol. Biol. 338, 695-709 (2004).
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 695-709
-
-
Thastrom, A.1
Bingham, L.M.2
Widom, J.3
-
39
-
-
0028672846
-
Cleavage of LexA repressor
-
Little, J.W. et al. Cleavage of LexA repressor. Methods Enzymol. 244, 266-284 (1994).
-
(1994)
Methods Enzymol.
, vol.244
, pp. 266-284
-
-
Little, J.W.1
-
40
-
-
0026528848
-
Dimerization of a specific DNA-binding protein on the DNA
-
Kim, B. & Little, J.W. Dimerization of a specific DNA-binding protein on the DNA. Science 255, 203-206 (1992).
-
(1992)
Science
, vol.255
, pp. 203-206
-
-
Kim, B.1
Little, J.W.2
-
41
-
-
0039313256
-
Investigation of rates and mechanisms of reactions
-
Wiley, New York
-
th edn. Vol. VI (Wiley, New York, 1986).
-
(1986)
th Edn.
, vol.6
-
-
Bernasconi, C.F.1
-
42
-
-
0042660353
-
Conceptual basis of fluorescence correlation spectroscopy and related techniques as tools in bioscience
-
eds. Zander, C., Enderlein, J. & Keller, R.A. Wiley-VCH, Berlin
-
Widengren, J. & Mets, U. Conceptual basis of fluorescence correlation spectroscopy and related techniques as tools in bioscience. In Single Molecule Detection in Solution (eds. Zander, C., Enderlein, J. & Keller, R.A.) 69-120 (Wiley-VCH, Berlin, 2002).
-
(2002)
Single Molecule Detection in Solution
, pp. 69-120
-
-
Widengren, J.1
Mets, U.2
|