-
1
-
-
0030954893
-
Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization
-
Aggarwal R., Brar D., Khush G. Two new genomes in the Oryza complex identified on the basis of molecular divergence analysis using total genomic DNA hybridization. Mol. Gen. Genet. 1997, 254:1-12.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 1-12
-
-
Aggarwal, R.1
Brar, D.2
Khush, G.3
-
2
-
-
0032766702
-
Phylogenetic relationships among Oryza species revealed by AFLP markers
-
Aggarwal R., Brar D., Nandi S., Huang N., Khush G. Phylogenetic relationships among Oryza species revealed by AFLP markers. Theor. Appl. Genet. 1999, 98:1320-1328.
-
(1999)
Theor. Appl. Genet.
, vol.98
, pp. 1320-1328
-
-
Aggarwal, R.1
Brar, D.2
Nandi, S.3
Huang, N.4
Khush, G.5
-
3
-
-
30044435245
-
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
-
Ammiraju J.S., Luo M., Goicoechea J.L., Wang W., Kudrna D., Mueller C., Talag J., Kim H.R., Sisneros N.B., Blackmon B. The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res. 2006, 16:140-147.
-
(2006)
Genome Res.
, vol.16
, pp. 140-147
-
-
Ammiraju, J.S.1
Luo, M.2
Goicoechea, J.L.3
Wang, W.4
Kudrna, D.5
Mueller, C.6
Talag, J.7
Kim, H.R.8
Sisneros, N.B.9
Blackmon, B.10
-
4
-
-
62549137865
-
Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set
-
Ammiraju J.S., Lu F., Sanyal A., Yu Y., Song X., Jiang N., Pontaroli A.C., Rambo T., Currie J., Collura K., Talag J., Fan C., Goicoechea J.L., Zuccolo A., Chen J., Bennetzen J.L., Chen M., Jackson S., Wing R.A. Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell 2008, 20:3191-3209.
-
(2008)
Plant Cell
, vol.20
, pp. 3191-3209
-
-
Ammiraju, J.S.1
Lu, F.2
Sanyal, A.3
Yu, Y.4
Song, X.5
Jiang, N.6
Pontaroli, A.C.7
Rambo, T.8
Currie, J.9
Collura, K.10
Talag, J.11
Fan, C.12
Goicoechea, J.L.13
Zuccolo, A.14
Chen, J.15
Bennetzen, J.L.16
Chen, M.17
Jackson, S.18
Wing, R.A.19
-
5
-
-
77954893229
-
Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza
-
Ammiraju J.S., Fan C., Yu Y., Song X., Cranston K.A., Pontaroli A.C., Lu F., Sanyal A., Jiang N., Rambo T., Currie J., Collura K., Talag J., Bennetzen J.L., Chen M., Jackson S., Wing R.A. Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. Plant J. 2010, 63:430-442.
-
(2010)
Plant J.
, vol.63
, pp. 430-442
-
-
Ammiraju, J.S.1
Fan, C.2
Yu, Y.3
Song, X.4
Cranston, K.A.5
Pontaroli, A.C.6
Lu, F.7
Sanyal, A.8
Jiang, N.9
Rambo, T.10
Currie, J.11
Collura, K.12
Talag, J.13
Bennetzen, J.L.14
Chen, M.15
Jackson, S.16
Wing, R.A.17
-
6
-
-
0001001759
-
Combination of data in phylogenetic analysis
-
Bandelt H. Combination of data in phylogenetic analysis. Plant Syst. Evol. 1995, 9(suppl):355-361.
-
(1995)
Plant Syst. Evol.
, vol.9
, Issue.SUPPL.
, pp. 355-361
-
-
Bandelt, H.1
-
7
-
-
0037022379
-
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba
-
Bapteste E., Brinkmann H., Lee J.A., Moore D.V., Sensen C.W., Gordon P., Duruflé L., Gaasterland T., Lopez P., Müller M. The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba. Proc. Natl. Acad. Sci. USA 2002, 99:1414-1419.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 1414-1419
-
-
Bapteste, E.1
Brinkmann, H.2
Lee, J.A.3
Moore, D.V.4
Sensen, C.W.5
Gordon, P.6
Duruflé, L.7
Gaasterland, T.8
Lopez, P.9
Müller, M.10
-
8
-
-
0000959922
-
Phylogenetic relationships of annual and perennial wild rice: probing by direct DNA sequencing
-
Barbier P., Morishima H., Ishihama A. Phylogenetic relationships of annual and perennial wild rice: probing by direct DNA sequencing. Theor. Appl. Genet. 1991, 81:693-702.
-
(1991)
Theor. Appl. Genet.
, vol.81
, pp. 693-702
-
-
Barbier, P.1
Morishima, H.2
Ishihama, A.3
-
9
-
-
33847298027
-
Patterns in grass genome evolution
-
Bennetzen J.L. Patterns in grass genome evolution. Curr. Opin. Plant Biol. 2007, 10:176-181.
-
(2007)
Curr. Opin. Plant Biol.
, vol.10
, pp. 176-181
-
-
Bennetzen, J.L.1
-
10
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten J. A review of long-branch attraction. Cladistics 2005, 21:163-193.
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
11
-
-
43049120571
-
Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling
-
Bouchenak-Khelladi Y., Salamin N., Savolainen V., Forest F., Bank M., Chase M.W., Hodkinson T.R. Large multi-gene phylogenetic trees of the grasses (Poaceae): progress towards complete tribal and generic level sampling. Mol. Phylogenet. Evol. 2008, 47:488-505.
-
(2008)
Mol. Phylogenet. Evol.
, vol.47
, pp. 488-505
-
-
Bouchenak-Khelladi, Y.1
Salamin, N.2
Savolainen, V.3
Forest, F.4
Bank, M.5
Chase, M.W.6
Hodkinson, T.R.7
-
12
-
-
32944456727
-
Wide hybridization for rice improvements: alien gene transfer and molecular characterization of introgression
-
WARDA, Cote divoire, M.P. Jones, M. Dingkhun, D.E. Johnson, S.O. Fagade (Eds.)
-
Brar D., Khush G. Wide hybridization for rice improvements: alien gene transfer and molecular characterization of introgression. Interspecific Hybridization: Progress and Prospect 1997, 21-29. WARDA, Cote divoire. M.P. Jones, M. Dingkhun, D.E. Johnson, S.O. Fagade (Eds.).
-
(1997)
Interspecific Hybridization: Progress and Prospect
, pp. 21-29
-
-
Brar, D.1
Khush, G.2
-
13
-
-
34250389706
-
The origin, evolution, cultivation, dissemination, and diversification of Asian and African rices
-
Chang T.T. The origin, evolution, cultivation, dissemination, and diversification of Asian and African rices. Euphytica 1976, 25:425-441.
-
(1976)
Euphytica
, vol.25
, pp. 425-441
-
-
Chang, T.T.1
-
14
-
-
0035130163
-
Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees
-
Chen F.C., Li W.H. Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet. 2001, 68:444-456.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 444-456
-
-
Chen, F.C.1
Li, W.H.2
-
15
-
-
84875859902
-
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
-
Chen J., Huang Q., Gao D., Wang J., Lang Y., Liu T., Li B., Bai Z., Goicoechea J.L., Liang C., Chen C., Zhang W., Sun S., Liao Y., Zhang X., Yang L., Song C., Wang M., Shi J., Liu G., Liu J., Zhou H., Zhou W., Yu Q., An N., Chen Y., Cai Q., Wang B., Liu B., Min J., Huang Y., Wu H., Li Z., Zhang Y., Yin Y., Song W., Jiang J., Jackson S.A., Wing R.A., Wang J., Chen M. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nat. Commun. 2013, 4:1595.
-
(2013)
Nat. Commun.
, vol.4
, pp. 1595
-
-
Chen, J.1
Huang, Q.2
Gao, D.3
Wang, J.4
Lang, Y.5
Liu, T.6
Li, B.7
Bai, Z.8
Goicoechea, J.L.9
Liang, C.10
Chen, C.11
Zhang, W.12
Sun, S.13
Liao, Y.14
Zhang, X.15
Yang, L.16
Song, C.17
Wang, M.18
Shi, J.19
Liu, G.20
Liu, J.21
Zhou, H.22
Zhou, W.23
Yu, Q.24
An, N.25
Chen, Y.26
Cai, Q.27
Wang, B.28
Liu, B.29
Min, J.30
Huang, Y.31
Wu, H.32
Li, Z.33
Zhang, Y.34
Yin, Y.35
Song, W.36
Jiang, J.37
Jackson, S.A.38
Wing, R.A.39
Wang, J.40
Chen, M.41
more..
-
16
-
-
0036814150
-
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis
-
Cheng C., Tsuchimoto S., Ohtsubo H., Ohtsubo E. Evolutionary relationships among rice species with AA genome based on SINE insertion analysis. Genes. Genet. Syst. 2002, 77:323-334.
-
(2002)
Genes. Genet. Syst.
, vol.77
, pp. 323-334
-
-
Cheng, C.1
Tsuchimoto, S.2
Ohtsubo, H.3
Ohtsubo, E.4
-
17
-
-
33750909456
-
Chloroplast diversity and phylogeny in wild and cultivated rice (Oryza spp.)
-
Chuayjaeng S., Volkaert H. Chloroplast diversity and phylogeny in wild and cultivated rice (Oryza spp.). Kasetsart J. 2006, 40:306-313.
-
(2006)
Kasetsart J.
, vol.40
, pp. 306-313
-
-
Chuayjaeng, S.1
Volkaert, H.2
-
18
-
-
0141853996
-
Asymmetric sequence divergence of duplicate genes
-
Conant G.C., Wagner A. Asymmetric sequence divergence of duplicate genes. Genome Res. 2003, 13:2052-2058.
-
(2003)
Genome Res.
, vol.13
, pp. 2052-2058
-
-
Conant, G.C.1
Wagner, A.2
-
19
-
-
70450231658
-
Species trees from highly incongruent gene trees in rice
-
Cranston K.A., Hurwitz B., Ware D., Stein L., Wing R.A. Species trees from highly incongruent gene trees in rice. Syst. Biol. 2009, 58:489-500.
-
(2009)
Syst. Biol.
, vol.58
, pp. 489-500
-
-
Cranston, K.A.1
Hurwitz, B.2
Ware, D.3
Stein, L.4
Wing, R.A.5
-
20
-
-
0034561529
-
RFLP relationships of A-genome species in the genus Oryza
-
Doi K., Nonomura M.N., Yoshimura A., Iwata N., Vaughan D.A. RFLP relationships of A-genome species in the genus Oryza. J. Facul. Agric. Kyushu Univ. 2000, 45:83-98.
-
(2000)
J. Facul. Agric. Kyushu Univ.
, vol.45
, pp. 83-98
-
-
Doi, K.1
Nonomura, M.N.2
Yoshimura, A.3
Iwata, N.4
Vaughan, D.A.5
-
21
-
-
27844438226
-
Genome-scale evidence of the nematode-arthropod clade
-
Dopazo H., Dopazo J. Genome-scale evidence of the nematode-arthropod clade. Genome Biol. 2005, 6:R41.
-
(2005)
Genome Biol.
, vol.6
-
-
Dopazo, H.1
Dopazo, J.2
-
22
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle J.J., Doyle J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19:11-15.
-
(1987)
Phytochem. Bull.
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
23
-
-
33847117718
-
Phylogenetic analysis of AA-genome Oryza species (Poaceae) based on chloroplast, mitochondrial, and nuclear DNA sequences
-
Duan S., Lu B., Li Z., Tong J., Kong J., Yao W., Li S., Zhu Y. Phylogenetic analysis of AA-genome Oryza species (Poaceae) based on chloroplast, mitochondrial, and nuclear DNA sequences. Biochem. Genet. 2007, 45:113-129.
-
(2007)
Biochem. Genet.
, vol.45
, pp. 113-129
-
-
Duan, S.1
Lu, B.2
Li, Z.3
Tong, J.4
Kong, J.5
Yao, W.6
Li, S.7
Zhu, Y.8
-
25
-
-
0035527390
-
Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation
-
Fishbein M., Hibsch-Jetter C., Soltis D.E., Hufford L. Phylogeny of Saxifragales (angiosperms, eudicots): analysis of a rapid, ancient radiation. Syst. Biol. 2001, 50:817-847.
-
(2001)
Syst. Biol.
, vol.50
, pp. 817-847
-
-
Fishbein, M.1
Hibsch-Jetter, C.2
Soltis, D.E.3
Hufford, L.4
-
26
-
-
8844244033
-
Very low gene duplication rate in the yeast genome
-
Gao L., Innan H. Very low gene duplication rate in the yeast genome. Science 2004, 306:1367-1370.
-
(2004)
Science
, vol.306
, pp. 1367-1370
-
-
Gao, L.1
Innan, H.2
-
27
-
-
2442657861
-
Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences
-
Gao L., McCarthy E., Ganko E., McDonald J. Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences. BMC Genom. 2004, 5:18.
-
(2004)
BMC Genom.
, vol.5
, pp. 18
-
-
Gao, L.1
McCarthy, E.2
Ganko, E.3
McDonald, J.4
-
28
-
-
0029812835
-
Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
-
Gaut B.S., Morton B.R., McCaig B.C., Clegg M.T. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc. Natl. Acad. Sci. USA 1996, 93:10274-10279.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10274-10279
-
-
Gaut, B.S.1
Morton, B.R.2
McCaig, B.C.3
Clegg, M.T.4
-
29
-
-
0033452726
-
Phylogeny of rice genomes with emphasis on origins of allotetraploid species
-
Ge S., Sang T., Lu B.R., Hong D.Y. Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc. Natl. Acad. Sci. USA 1999, 96:14400-14405.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14400-14405
-
-
Ge, S.1
Sang, T.2
Lu, B.R.3
Hong, D.Y.4
-
30
-
-
0012544362
-
Phylogeny of the genus Oryza as revealed by molecular approaches
-
IRRI, Los Banos, G.S. Khush, D.S. Brar, B. Hardy (Eds.)
-
Ge S., Sang T., Lu B.R., Hong D.Y. Phylogeny of the genus Oryza as revealed by molecular approaches. Rice Genetics IV Proceedings of the Fourth International Rice Genetics Symposium 2001, 89-105. IRRI, Los Banos. G.S. Khush, D.S. Brar, B. Hardy (Eds.).
-
(2001)
Rice Genetics IV Proceedings of the Fourth International Rice Genetics Symposium
, pp. 89-105
-
-
Ge, S.1
Sang, T.2
Lu, B.R.3
Hong, D.Y.4
-
32
-
-
0035855865
-
Arthropod phylogeny based on eight molecular loci and morphology
-
Giribet G., Edgecombe G.D., Wheeler W.C. Arthropod phylogeny based on eight molecular loci and morphology. Nature 2001, 413:157-160.
-
(2001)
Nature
, vol.413
, pp. 157-160
-
-
Giribet, G.1
Edgecombe, G.D.2
Wheeler, W.C.3
-
33
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
Goff S.A., Ricke D., Lan T.H., Presting G., Wang R., Dunn M., Glazebrook J., Sessions A., Oeller P., Varma H. A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 2002, 296:79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
-
34
-
-
23144433822
-
PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference
-
Guindon S., Lethiec F., Duroux P., Gascuel O. PHYML Online-a web server for fast maximum likelihood-based phylogenetic inference. Nucl. Acids Res. 2005, 33(suppl 2):W557-W559.
-
(2005)
Nucl. Acids Res.
, vol.33
, Issue.SUPPL. 2
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
35
-
-
23944471581
-
Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes
-
Guo Y.L., Ge S. Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes. Am. J. Bot. 2005, 92:1548-1558.
-
(2005)
Am. J. Bot.
, vol.92
, pp. 1548-1558
-
-
Guo, Y.L.1
Ge, S.2
-
36
-
-
46449135061
-
A phylogenomic study of birds reveals their evolutionary history
-
Hackett S.J., Kimball R.T., Reddy S., Bowie R.C.K., Braun E.L., Braun M.J., Chojnowski J.L., Cox W.A., Han K.L., Harshman J. A phylogenomic study of birds reveals their evolutionary history. Science 2008, 320:1763-1768.
-
(2008)
Science
, vol.320
, pp. 1763-1768
-
-
Hackett, S.J.1
Kimball, R.T.2
Reddy, S.3
Bowie, R.C.K.4
Braun, E.L.5
Braun, M.J.6
Chojnowski, J.L.7
Cox, W.A.8
Han, K.L.9
Harshman, J.10
-
37
-
-
21144444309
-
Consensus networks: a method for visualising incompatibilities in collections of trees
-
Springer-Verlag, New York, G. Benson, R. Page (Eds.)
-
Holland B., Moulton V. Consensus networks: a method for visualising incompatibilities in collections of trees. Algorithms in Bioinformatics 2003, 165-176. Springer-Verlag, New York. G. Benson, R. Page (Eds.).
-
(2003)
Algorithms in Bioinformatics
, pp. 165-176
-
-
Holland, B.1
Moulton, V.2
-
38
-
-
3042637206
-
Using consensus networks to visualize contradictory evidence for species phylogeny
-
Holland B.R., Huber K.T., Moulton V., Lockhart P.J. Using consensus networks to visualize contradictory evidence for species phylogeny. Mol. Biol. Evol. 2004, 21:1459-1461.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1459-1461
-
-
Holland, B.R.1
Huber, K.T.2
Moulton, V.3
Lockhart, P.J.4
-
39
-
-
55549123888
-
Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice
-
Huang X., Lu G., Zhao Q., Liu X., Han B. Genome-wide analysis of transposon insertion polymorphisms reveals intraspecific variation in cultivated rice. Plant Physiol. 2008, 148:25-40.
-
(2008)
Plant Physiol.
, vol.148
, pp. 25-40
-
-
Huang, X.1
Lu, G.2
Zhao, Q.3
Liu, X.4
Han, B.5
-
40
-
-
30744470609
-
Application of phylogenetic networks in evolutionary studies
-
Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
41
-
-
0035855871
-
Mitochondrial protein phylogeny joins myriapods with chelicerates
-
Hwang U.W., Friedrich M., Tautz D., Park C.J., Kim W. Mitochondrial protein phylogeny joins myriapods with chelicerates. Nature 2001, 413:154-157.
-
(2001)
Nature
, vol.413
, pp. 154-157
-
-
Hwang, U.W.1
Friedrich, M.2
Tautz, D.3
Park, C.J.4
Kim, W.5
-
42
-
-
84907150192
-
International Rice Genome Sequencing Project
-
The map-based sequence of the rice genome. Nature 436, 793-800.
-
International Rice Genome Sequencing Project, 2005. The map-based sequence of the rice genome. Nature 436, 793-800.
-
(2005)
-
-
-
43
-
-
0029997149
-
Phylogenetic relationships in A-genome species of rice as revealed by RAPD analysis
-
Ishii T., Nakano T., Maeda H., Kamijima O. Phylogenetic relationships in A-genome species of rice as revealed by RAPD analysis. Genes. Genet. Syst. 1996, 71:195-210.
-
(1996)
Genes. Genet. Syst.
, vol.71
, pp. 195-210
-
-
Ishii, T.1
Nakano, T.2
Maeda, H.3
Kamijima, O.4
-
44
-
-
0034886886
-
Nuclear-and chloroplast-microsatellite variation in A-genome species of rice
-
Ishii T., Xu Y., McCouch S. Nuclear-and chloroplast-microsatellite variation in A-genome species of rice. Genome 2001, 44:658-666.
-
(2001)
Genome
, vol.44
, pp. 658-666
-
-
Ishii, T.1
Xu, Y.2
McCouch, S.3
-
45
-
-
0033059511
-
P-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species
-
Iwamoto M., Nagashima H., Nagamine T., Higo H., Higo K. P-SINE1-like intron of the CatA catalase homologs and phylogenetic relationships among AA-genome Oryza and related species. Theor. Appl. Genet. 1999, 98:853-861.
-
(1999)
Theor. Appl. Genet.
, vol.98
, pp. 853-861
-
-
Iwamoto, M.1
Nagashima, H.2
Nagamine, T.3
Higo, H.4
Higo, K.5
-
46
-
-
50249151865
-
Nuclear and cpDNA sequences combined provide strong inference of higher phylogenetic relationships in the phlox family (Polemoniaceae)
-
Johnson L.A., Chan L.M., Weese T.L., Busby L.D., McMurry S. Nuclear and cpDNA sequences combined provide strong inference of higher phylogenetic relationships in the phlox family (Polemoniaceae). Mol. Phylogenet. Evol. 2008, 48:997-1012.
-
(2008)
Mol. Phylogenet. Evol.
, vol.48
, pp. 997-1012
-
-
Johnson, L.A.1
Chan, L.M.2
Weese, T.L.3
Busby, L.D.4
McMurry, S.5
-
47
-
-
0031799253
-
Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species
-
Juliano A.B., Naredo M.E.B., Jackson M. Taxonomic status of Oryza glumaepatula Steud. I. Comparative morphological studies of New World diploids and Asian AA genome species. Genet. Resour. Crop Evol. 1998, 45:197-203.
-
(1998)
Genet. Resour. Crop Evol.
, vol.45
, pp. 197-203
-
-
Juliano, A.B.1
Naredo, M.E.B.2
Jackson, M.3
-
48
-
-
84875134412
-
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
-
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T. Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data. Rice 2013, 6:4.
-
(2013)
Rice
, vol.6
, pp. 4
-
-
Kawahara, Y.1
de la Bastide, M.2
Hamilton, J.P.3
Kanamori, H.4
McCombie, W.R.5
Ouyang, S.6
Schwartz, D.C.7
Tanaka, T.8
Wu, J.9
Zhou, S.10
Childs, K.L.11
Davidson, R.M.12
Lin, H.13
Quesada-Ocampo, L.14
Vaillancourt, B.15
Sakai, H.16
Lee, S.S.17
Kim, J.18
Numa, H.19
Itoh, T.20
Buell, C.R.21
Matsumoto, T.22
more..
-
49
-
-
33645816587
-
Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
-
Keane T., Creevey C., Pentony M., Naughton T., Mclnerney J. Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Biol. Evol. 2006, 6:29.
-
(2006)
BMC Biol. Evol.
, vol.6
, pp. 29
-
-
Keane, T.1
Creevey, C.2
Pentony, M.3
Naughton, T.4
Mclnerney, J.5
-
50
-
-
25144453704
-
Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks
-
Kennedy M., Holland B.R., Gray R.D., Spencer H.G. Untangling long branches: identifying conflicting phylogenetic signals using spectral analysis, neighbor-net, and consensus networks. Syst. Biol. 2005, 54:620-633.
-
(2005)
Syst. Biol.
, vol.54
, pp. 620-633
-
-
Kennedy, M.1
Holland, B.R.2
Gray, R.D.3
Spencer, H.G.4
-
51
-
-
0031239092
-
Origin, dispersal, cultivation and variation of rice
-
Khush G.S. Origin, dispersal, cultivation and variation of rice. Plant Mol. Biol. 1997, 35:25-34.
-
(1997)
Plant Mol. Biol.
, vol.35
, pp. 25-34
-
-
Khush, G.S.1
-
52
-
-
0036804525
-
Phylogeny of the oriental Drosophila melanogaster species group: a multilocus reconstruction
-
Kopp A., True J.R. Phylogeny of the oriental Drosophila melanogaster species group: a multilocus reconstruction. Syst. Biol. 2002, 51:786-805.
-
(2002)
Syst. Biol.
, vol.51
, pp. 786-805
-
-
Kopp, A.1
True, J.R.2
-
53
-
-
2442562566
-
Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants
-
Lee C., Wen J. Phylogeny of Panax using chloroplast trnC-trnD intergenic region and the utility of trnC-trnD in interspecific studies of plants. Mol. Phylogenet. Evol. 2004, 31:894-903.
-
(2004)
Mol. Phylogenet. Evol.
, vol.31
, pp. 894-903
-
-
Lee, C.1
Wen, J.2
-
54
-
-
0007411173
-
Preliminary studies on taxonomy and biosystematics of the AA genome Oryza species (Poaceae)
-
CSIRO, Melbourne, S.W.L. Jacobs (Ed.)
-
Lu B.R., Naredo M.E.B., Juliano A.B., Jackson M.T. Preliminary studies on taxonomy and biosystematics of the AA genome Oryza species (Poaceae). Grasses: Systematics and Evolution 2000, 51-58. CSIRO, Melbourne. S.W.L. Jacobs (Ed.).
-
(2000)
Grasses: Systematics and Evolution
, pp. 51-58
-
-
Lu, B.R.1
Naredo, M.E.B.2
Juliano, A.B.3
Jackson, M.T.4
-
55
-
-
60549104200
-
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
-
Lu F., Ammiraju J.S., Sanyal A., Zhang S., Song R., Chen J., Li G., Sui Y., Song X., Cheng Z., de Oliveira A.C., Bennetzen J.L., Jackson S.A., Wing R.A., Chen M. Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proc. Natl. Acad. Sci. USA 2009, 106:2071-2076.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 2071-2076
-
-
Lu, F.1
Ammiraju, J.S.2
Sanyal, A.3
Zhang, S.4
Song, R.5
Chen, J.6
Li, G.7
Sui, Y.8
Song, X.9
Cheng, Z.10
de Oliveira, A.C.11
Bennetzen, J.L.12
Jackson, S.A.13
Wing, R.A.14
Chen, M.15
-
56
-
-
4344616881
-
Rapid recent growth and divergence of rice nuclear genomes
-
Ma J., Bennetzen J.L. Rapid recent growth and divergence of rice nuclear genomes. Proc. Natl. Acad. Sci. USA 2004, 101:12404-12410.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 12404-12410
-
-
Ma, J.1
Bennetzen, J.L.2
-
57
-
-
0030311441
-
Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
-
Mason-Gamer R.J., Kellogg E.A. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Syst. Biol. 1996, 45:524-545.
-
(1996)
Syst. Biol.
, vol.45
, pp. 524-545
-
-
Mason-Gamer, R.J.1
Kellogg, E.A.2
-
58
-
-
0031796608
-
Granule-bound starch synthase: structure, function, and phylogenetic utility
-
Mason-Gamer R.J., Weil C.F., Kellogg E.A. Granule-bound starch synthase: structure, function, and phylogenetic utility. Mol. Biol. Evol. 1998, 15:1658-1673.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1658-1673
-
-
Mason-Gamer, R.J.1
Weil, C.F.2
Kellogg, E.A.3
-
59
-
-
0027073866
-
Evolutionary studies in cultivated rice and its wild relatives
-
Morishima H., Sano Y., Oka H.I. Evolutionary studies in cultivated rice and its wild relatives. Oxford Surveys Evol. Biol. 1992, 8:135-184.
-
(1992)
Oxford Surveys Evol. Biol.
, vol.8
, pp. 135-184
-
-
Morishima, H.1
Sano, Y.2
Oka, H.I.3
-
60
-
-
77951586581
-
Using data-display networks for exploratory data analysis in phylogenetic studies
-
Morrison D.A. Using data-display networks for exploratory data analysis in phylogenetic studies. Mol. Biol. Evol. 2010, 27:1044-1057.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1044-1057
-
-
Morrison, D.A.1
-
61
-
-
22944482184
-
SeqState: primer design and sequence statistics for phylogenetic DNA datasets
-
Muller K. SeqState: primer design and sequence statistics for phylogenetic DNA datasets. Appl. Bioinform. 2005, 4:65-69.
-
(2005)
Appl. Bioinform.
, vol.4
, pp. 65-69
-
-
Muller, K.1
-
62
-
-
0031747451
-
Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between New World diploids and AA genome species from Asia and Australia
-
Naredo M.E.B., Juliano A.B., Lu B.R., Jackson M.T. Taxonomic status of Oryza glumaepatula Steud. II. Hybridization between New World diploids and AA genome species from Asia and Australia. Genet. Resour. Crop Evol. 1998, 45:205-214.
-
(1998)
Genet. Resour. Crop Evol.
, vol.45
, pp. 205-214
-
-
Naredo, M.E.B.1
Juliano, A.B.2
Lu, B.R.3
Jackson, M.T.4
-
63
-
-
0001231343
-
Origin and cytogenetics of rice
-
Nayar N. Origin and cytogenetics of rice. Adv. Genet. 1973, 17:153-292.
-
(1973)
Adv. Genet.
, vol.17
, pp. 153-292
-
-
Nayar, N.1
-
64
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M., Gojobori T. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 1986, 3:418-426.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
65
-
-
39749188544
-
Rooting the eutherian tree: the power and pitfalls of phylogenomics
-
Nishihara H., Okada N., Hasegawa M. Rooting the eutherian tree: the power and pitfalls of phylogenomics. Genome Biol. 2007, 8:R199.
-
(2007)
Genome Biol.
, vol.8
-
-
Nishihara, H.1
Okada, N.2
Hasegawa, M.3
-
67
-
-
0042208126
-
Genetic variations of AA genome Oryza species measured by MITE-AFLP
-
Park K., Kim N., Cho Y., Kang K., Lee J., Kim N.S. Genetic variations of AA genome Oryza species measured by MITE-AFLP. Theor. Appl. Genet. 2003, 107:203-209.
-
(2003)
Theor. Appl. Genet.
, vol.107
, pp. 203-209
-
-
Park, K.1
Kim, N.2
Cho, Y.3
Kang, K.4
Lee, J.5
Kim, N.S.6
-
68
-
-
33745591114
-
Genetic evidence for complex speciation of humans and chimpanzees
-
Patterson N., Richter D.J., Gnerre S., Lander E.S., Reich D. Genetic evidence for complex speciation of humans and chimpanzees. Nature 2006, 441:1103-1108.
-
(2006)
Nature
, vol.441
, pp. 1103-1108
-
-
Patterson, N.1
Richter, D.J.2
Gnerre, S.3
Lander, E.S.4
Reich, D.5
-
69
-
-
33749392949
-
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis , a wild relative of rice
-
Piegu B., Guyot R., Picault N., Roulin A., Saniyal A., Kim H., Collura K., Brar D.S., Jackson S., Wing R.A. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis , a wild relative of rice. Genome Res. 2006, 16:1262-1269.
-
(2006)
Genome Res.
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
-
70
-
-
33746272317
-
HyPhy: hypothesis testing using phylogenies
-
Pond S.L.K., Muse S.V. HyPhy: hypothesis testing using phylogenies. Stat. Methods Mol. Evol. 2005, 21:125-181.
-
(2005)
Stat. Methods Mol. Evol.
, vol.21
, pp. 125-181
-
-
Pond, S.L.K.1
Muse, S.V.2
-
71
-
-
0031773680
-
Modeltest: testing the model of DNA substitution
-
Posada D., Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
72
-
-
33750303564
-
The deepest divergences in land plants inferred from phylogenomic evidence
-
Qiu Y.L., Li L., Wang B., Chen Z., Knoop V., Groth-Malonek M., Dombrovska O., Lee J., Kent L., Rest J. The deepest divergences in land plants inferred from phylogenomic evidence. Proc. Natl. Acad. Sci. USA 2006, 103:15511-15516.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 15511-15516
-
-
Qiu, Y.L.1
Li, L.2
Wang, B.3
Chen, Z.4
Knoop, V.5
Groth-Malonek, M.6
Dombrovska, O.7
Lee, J.8
Kent, L.9
Rest, J.10
-
73
-
-
38849160068
-
Accurate gene-tree reconstruction by learning gene-and species-specific substitution rates across multiple complete genomes
-
Rasmussen M.D., Kellis M. Accurate gene-tree reconstruction by learning gene-and species-specific substitution rates across multiple complete genomes. Genome Res. 2007, 17:1932-1942.
-
(2007)
Genome Res.
, vol.17
, pp. 1932-1942
-
-
Rasmussen, M.D.1
Kellis, M.2
-
74
-
-
0346038786
-
A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers
-
Ren F., Lu B.R., Li S., Huang J., Zhu Y. A comparative study of genetic relationships among the AA-genome Oryza species using RAPD and SSR markers. Theor. Appl. Genet. 2003, 108:113-120.
-
(2003)
Theor. Appl. Genet.
, vol.108
, pp. 113-120
-
-
Ren, F.1
Lu, B.R.2
Li, S.3
Huang, J.4
Zhu, Y.5
-
76
-
-
0042313795
-
Conflicting phylogenetic signals at the base of the metazoan tree
-
Rokas A., King N., Finnerty J., Carroll S.B. Conflicting phylogenetic signals at the base of the metazoan tree. Evol. Dev. 2003, 5:346-359.
-
(2003)
Evol. Dev.
, vol.5
, pp. 346-359
-
-
Rokas, A.1
King, N.2
Finnerty, J.3
Carroll, S.B.4
-
77
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A., Williams B.L., King N., Carroll S.B. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 2003, 425:798-804.
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
78
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
79
-
-
68549085151
-
Genome-wide analysis of conservation and divergence of microsatellites in rice
-
Roorkiwal M., Grover A., Sharma P.C. Genome-wide analysis of conservation and divergence of microsatellites in rice. Mol. Genet. Genomics 2009, 282:205-215.
-
(2009)
Mol. Genet. Genomics
, vol.282
, pp. 205-215
-
-
Roorkiwal, M.1
Grover, A.2
Sharma, P.C.3
-
81
-
-
0000809084
-
Molecular markers in rice systematics and the evaluation of genetic resources
-
Springer, New York, Y.P.S. Bajaj (Ed.)
-
Second G. Molecular markers in rice systematics and the evaluation of genetic resources. Biotechnology in Agriculture and Forestry 1991, 468-494. Springer, New York. Y.P.S. Bajaj (Ed.).
-
(1991)
Biotechnology in Agriculture and Forestry
, pp. 468-494
-
-
Second, G.1
-
82
-
-
0030733827
-
Congruence and consensus in the cotton tribe (Malvaceae)
-
Seelanan T., Schnabel A., Wendel J.F. Congruence and consensus in the cotton tribe (Malvaceae). Syst. Bot. 1997, 22:259-290.
-
(1997)
Syst. Bot.
, vol.22
, pp. 259-290
-
-
Seelanan, T.1
Schnabel, A.2
Wendel, J.F.3
-
83
-
-
0037002267
-
Rice as a model for comparative genomics of plants
-
Shimamoto K., Kyozuka J. Rice as a model for comparative genomics of plants. Annu. Rev. Plant Biol. 2002, 53:399-419.
-
(2002)
Annu. Rev. Plant Biol.
, vol.53
, pp. 399-419
-
-
Shimamoto, K.1
Kyozuka, J.2
-
84
-
-
0034350427
-
Gaps as characters in sequence-based phylogenetic analyses
-
Simmons M.P., Ochoterena H. Gaps as characters in sequence-based phylogenetic analyses. Syst. Biol. 2000, 49:369-381.
-
(2000)
Syst. Biol.
, vol.49
, pp. 369-381
-
-
Simmons, M.P.1
Ochoterena, H.2
-
85
-
-
0013055350
-
Incompatibility barriers operating in crosses of Oryza sativa with related species and genera
-
Plenum, New York, J.P. Gustafon (Ed.)
-
Sitch L.A. Incompatibility barriers operating in crosses of Oryza sativa with related species and genera. Gene Manipulation in Plant Improvement II 1990, 77-93. Plenum, New York. J.P. Gustafon (Ed.).
-
(1990)
Gene Manipulation in Plant Improvement II
, pp. 77-93
-
-
Sitch, L.A.1
-
86
-
-
0001957537
-
Crossability of wild Oryza species and their potential use for improvement of cultivated rice
-
Sitch L., Dalmacio R., Romero G. Crossability of wild Oryza species and their potential use for improvement of cultivated rice. Rice Genet. Newsl. 1989, 6:56-60.
-
(1989)
Rice Genet. Newsl.
, vol.6
, pp. 56-60
-
-
Sitch, L.1
Dalmacio, R.2
Romero, G.3
-
87
-
-
0038781903
-
Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes
-
Subramanian S., Kumar S. Neutral substitutions occur at a faster rate in exons than in noncoding DNA in primate genomes. Genome Res. 2003, 13:838-844.
-
(2003)
Genome Res.
, vol.13
, pp. 838-844
-
-
Subramanian, S.1
Kumar, S.2
-
88
-
-
84888201675
-
-
PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4. Sinauer Associates, Sunderland (MA).
-
Swofford, D.L., 2003. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4. Sinauer Associates, Sunderland (MA).
-
(2003)
-
-
Swofford, D.L.1
-
89
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
Tajima F. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 1993, 135:599-607.
-
(1993)
Genetics
, vol.135
, pp. 599-607
-
-
Tajima, F.1
-
90
-
-
3242743113
-
The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes
-
Takezaki N., Figueroa F., Zaleska-Rutczynska Z., Takahata N., Klein J. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Mol. Biol. Evol. 2004, 21:1512-1524.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1512-1524
-
-
Takezaki, N.1
Figueroa, F.2
Zaleska-Rutczynska, Z.3
Takahata, N.4
Klein, J.5
-
91
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
92
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 1997, 25:4876-4882.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
95
-
-
0032805794
-
Polytomies and the power of phylogenetic inference
-
Walsh H., Kidd M., Moum T., Friesen V. Polytomies and the power of phylogenetic inference. Evolution 1999, 53:932-937.
-
(1999)
Evolution
, vol.53
, pp. 932-937
-
-
Walsh, H.1
Kidd, M.2
Moum, T.3
Friesen, V.4
-
96
-
-
34249840289
-
Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
-
Wang Z., Second G., Tanksley S. Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor. Appl. Genet. 1992, 83:565-581.
-
(1992)
Theor. Appl. Genet.
, vol.83
, pp. 565-581
-
-
Wang, Z.1
Second, G.2
Tanksley, S.3
-
97
-
-
0000162362
-
Phylogenetic incongruence: window into genome history and molecular evolution
-
Kluwer, Dordrecht, D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.)
-
Wendel J.F., Doyle J.J. Phylogenetic incongruence: window into genome history and molecular evolution. Molecular Systematics of Plants II DNA Sequencing 1998, 265-296. Kluwer, Dordrecht. D.E. Soltis, P.S. Soltis, J.J. Doyle (Eds.).
-
(1998)
Molecular Systematics of Plants II DNA Sequencing
, pp. 265-296
-
-
Wendel, J.F.1
Doyle, J.J.2
-
99
-
-
24344439443
-
The Oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species
-
Wing R.A., Ammiraju J.S.S., Luo M., Kim H.R., Yu Y., Kudrna D., Goicoechea J.L., Wang W., Nelson W., Rao K. The Oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol. Biol. 2005, 59:53-62.
-
(2005)
Plant Mol. Biol.
, vol.59
, pp. 53-62
-
-
Wing, R.A.1
Ammiraju, J.S.S.2
Luo, M.3
Kim, H.R.4
Yu, Y.5
Kudrna, D.6
Goicoechea, J.L.7
Wang, W.8
Nelson, W.9
Rao, K.10
-
100
-
-
28944442228
-
How much data are needed to resolve a difficult phylogeny? Case study in Lamiales
-
Wortley A.H., Rudall P.J., Harris D.J., Scotland R.W. How much data are needed to resolve a difficult phylogeny? Case study in Lamiales. Syst. Biol. 2005, 54:697-709.
-
(2005)
Syst. Biol.
, vol.54
, pp. 697-709
-
-
Wortley, A.H.1
Rudall, P.J.2
Harris, D.J.3
Scotland, R.W.4
-
101
-
-
0034848170
-
DAMBE: software package for data analysis in molecular biology and evolution
-
Xia X., Xie Z. DAMBE: software package for data analysis in molecular biology and evolution. J. Hered. 2001, 92:371-373.
-
(2001)
J. Hered.
, vol.92
, pp. 371-373
-
-
Xia, X.1
Xie, Z.2
-
102
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J., Hu S., Wang J., Wong G.K.S., Li S., Liu B., Deng Y., Dai L., Zhou Y., Zhang X. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 2002, 296:79-92.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.S.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
-
103
-
-
34250167927
-
New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification
-
Zhang S., Gu Y.Q., Singh J., Coleman-Derr D., Brar D.S., Jiang N., Lemaux P.G. New insights into Oryza genome evolution: high gene colinearity and differential retrotransposon amplification. Plant Mol. Biol. 2007, 64:589-600.
-
(2007)
Plant Mol. Biol.
, vol.64
, pp. 589-600
-
-
Zhang, S.1
Gu, Y.Q.2
Singh, J.3
Coleman-Derr, D.4
Brar, D.S.5
Jiang, N.6
Lemaux, P.G.7
-
104
-
-
21244501403
-
Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes
-
Zhu Q., Ge S. Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes. New Phytol. 2005, 167:249-265.
-
(2005)
New Phytol.
, vol.167
, pp. 249-265
-
-
Zhu, Q.1
Ge, S.2
-
105
-
-
45549084713
-
Analysis of 142 genes resolves the rapid diversification of the rice genus
-
Zou X.H., Zhang F.M., Zhang J.G., Zang L.L., Tang L., Wang J., Sang T., Ge S. Analysis of 142 genes resolves the rapid diversification of the rice genus. Genome Biol. 2008, 9:R49.
-
(2008)
Genome Biol.
, vol.9
-
-
Zou, X.H.1
Zhang, F.M.2
Zhang, J.G.3
Zang, L.L.4
Tang, L.5
Wang, J.6
Sang, T.7
Ge, S.8
|