-
1
-
-
30044435245
-
The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
-
Ammiraju JS, Luo M, Goicoechea JL Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B et al (2006) The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza. Genome Res 16:140-147
-
(2006)
Genome Res
, vol.16
, pp. 140-147
-
-
Ammiraju, J.S.1
Luo, M.2
Goicoechea Wang, J.L.W.3
Kudrna, D.4
Mueller, C.5
Talag, J.6
Kim, H.7
Sisneros, N.B.8
Blackmon, B.9
-
2
-
-
0037391473
-
The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis
-
Bennetzen JL, Ma J (2003) The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis. Curr Opin Plant Biol 6:128-133
-
(2003)
Curr Opin Plant Biol
, vol.6
, pp. 128-133
-
-
Bennetzen, J.L.1
Ma, J.2
-
3
-
-
6044226955
-
Consistent over-estimation of gene number in complex plant genomes
-
Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W (2004) Consistent over-estimation of gene number in complex plant genomes. Curr Opin Plant Biol 7:732-736
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 732-736
-
-
Bennetzen, J.L.1
Coleman, C.2
Liu, R.3
Ma, J.4
Ramakrishna, W.5
-
4
-
-
24344491236
-
Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses
-
Bowers JE, Arias MA, Asher R, Avise JA, Ball RT, Brewer GA, Buss RW, Chen AH, Edwards TM, Estill JC et al (2005) Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses. Proc Natl Acad Sci USA 102:13206-13211
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13206-13211
-
-
Bowers, J.E.1
Arias, M.A.2
Asher, R.3
Avise, J.A.4
Ball, R.T.5
Brewer, G.A.6
Buss, R.W.7
Chen, A.H.8
Edwards, T.M.9
Estill, J.C.10
-
6
-
-
20344407697
-
Evolution of DNA sequence nonhomologies among maize inbreds
-
Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A (2005) Evolution of DNA sequence nonhomologies among maize inbreds. Plant Cell 17:343-360
-
(2005)
Plant Cell
, vol.17
, pp. 343-360
-
-
Brunner, S.1
Fengler, K.2
Morgante, M.3
Tingey, S.4
Rafalski, A.5
-
7
-
-
0029743043
-
A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
-
Bureau TE, Ronald PC, Wessler SR (1996) A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc Natl Acad Sci USA 93:8524-8529
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 8524-8529
-
-
Bureau, T.E.1
Ronald, P.C.2
Wessler, S.R.3
-
8
-
-
33644499450
-
Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
-
Chapman BA, Bowers JE, Feltus FA, Paterson AH (2006) Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication. Proc Natl Acad Sci USA 103:2730-2735
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 2730-2735
-
-
Chapman, B.A.1
Bowers, J.E.2
Feltus, F.A.3
Paterson, A.H.4
-
9
-
-
6344245668
-
A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis
-
Cook D, Fowler S, Fiehn O, Thomashow MF (2004) A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proc Natl Acad Sci USA 101:15243-15248
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15243-15248
-
-
Cook, D.1
Fowler, S.2
Fiehn, O.3
Thomashow, M.F.4
-
10
-
-
0036061848
-
Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
-
Devos KM, Brown JK, Bennetzen JL (2002) Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res 12:1075-1079
-
(2002)
Genome Res
, vol.12
, pp. 1075-1079
-
-
Devos, K.M.1
Brown, J.K.2
Bennetzen, J.L.3
-
11
-
-
33748562137
-
Retrotranspositions in orthologous regions of closely related grass species
-
Du C, Swigonova Z, Messing J (2006) Retrotranspositions in orthologous regions of closely related grass species. BMC Evol Biol 6:62
-
(2006)
BMC Evol Biol
, vol.6
, pp. 62
-
-
Du, C.1
Swigonova, Z.2
Messing, J.3
-
12
-
-
0037297787
-
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
-
Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 33:751-763
-
(2003)
Plant J
, vol.33
, pp. 751-763
-
-
Dubouzet, J.G.1
Sakuma, Y.2
Ito, Y.3
Kasuga, M.4
Dubouzet, E.G.5
Miura, S.6
Seki, M.7
Shinozaki, K.8
Yamaguchi-Shinozaki, K.9
-
13
-
-
33846518736
-
Nearly Identical Paralogs: Implications for maize (Zea mays L.) genome evolution
-
Emrich SJ, Li L, Wen T-J, Yandeau-Nelson MD, Fu Y, Guo L, Chou H-H, Aluru S, Ashlock DA, Schnable PS (2007) Nearly Identical Paralogs: Implications for maize (Zea mays L.) genome evolution. Genetics 175:429-439
-
(2007)
Genetics
, vol.175
, pp. 429-439
-
-
Emrich, S.J.1
Li, L.2
Wen, T.-J.3
Yandeau-Nelson, M.D.4
Fu, Y.5
Guo, L.6
Chou, H.-H.7
Aluru, S.8
Ashlock, D.A.9
Schnable, P.S.10
-
14
-
-
0037295458
-
Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)
-
Feschotte C, Swamy L, Wessler SR (2003) Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs). Genetics 163:747-758
-
(2003)
Genetics
, vol.163
, pp. 747-758
-
-
Feschotte, C.1
Swamy, L.2
Wessler, S.R.3
-
16
-
-
0029812835
-
Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
-
Gaut BS, Morton BR, McCaig BC, Clegg MT (1996) Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci USA 93:10274-10279
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10274-10279
-
-
Gaut, B.S.1
Morton, B.R.2
McCaig, B.C.3
Clegg, M.T.4
-
17
-
-
0036213939
-
Evolutionary dynamics of grass genomes
-
Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytologist 154:15-28
-
(2002)
New Phytologist
, vol.154
, pp. 15-28
-
-
Gaut, B.S.1
-
18
-
-
0033452726
-
Phylogeny of rice genomes with emphasis on origins of allotetraploid species
-
Ge S, Sang T, Lu B-R, Hong D-Y (1999) Phylogeny of rice genomes with emphasis on origins of allotetraploid species. Proc Natl Acad Sci USA 96:14400-14405
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 14400-14405
-
-
Ge, S.1
Sang, T.2
Lu, B.-R.3
Hong, D.-Y.4
-
19
-
-
0037023349
-
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)
-
Goff SA, Ricke D, Lan T-H, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H et al (2002) A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica). Science 296:92-100
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.-H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
-
20
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
Goldman N, Yang Z (1994) A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol 11:725-736
-
(1994)
Mol Biol Evol
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
21
-
-
2442697991
-
Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes
-
Gu YQ, Coleman-Derr D, Kong X, Anderson OD (2004) Rapid genome evolution revealed by comparative sequence analysis of orthologous regions from four triticeae genomes. Plant Physiol 135:459-470
-
(2004)
Plant Physiol
, vol.135
, pp. 459-470
-
-
Gu, Y.Q.1
Coleman-Derr, D.2
Kong, X.3
Anderson, O.D.4
-
22
-
-
0038028675
-
Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution
-
Guo H, Moose SP (2003) Conserved noncoding sequences among cultivated cereal genomes identify candidate regulatory sequence elements and patterns of promoter evolution. Plant Cell 15:1143-1158
-
(2003)
Plant Cell
, vol.15
, pp. 1143-1158
-
-
Guo, H.1
Moose, S.P.2
-
23
-
-
17844396017
-
Transcribed processed pseudogenes in the human genome: An intermediate form of expressed retrosequence lacking protein-coding ability
-
Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M (2005) Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Res 33:2374-2383
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2374-2383
-
-
Harrison, P.M.1
Zheng, D.2
Zhang, Z.3
Carriero, N.4
Gerstein, M.5
-
24
-
-
0038414560
-
An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene
-
Hirotsune S, Yoshida N, Chen A, Garrett L, Sugiyama F, Takahashi S, Yagami K, Wynshaw-Boris A, Yoshiki A (2003) An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. Nature 423:91-96
-
(2003)
Nature
, vol.423
, pp. 91-96
-
-
Hirotsune, S.1
Yoshida, N.2
Chen, A.3
Garrett, L.4
Sugiyama, F.5
Takahashi, S.6
Yagami, K.7
Wynshaw-Boris, A.8
Yoshiki, A.9
-
26
-
-
0142059819
-
A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes
-
Ilic K, SanMiguel PJ, Bennetzen JL (2003) A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes. Proc Natl Acad Sci USA 100:12265-12270
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12265-12270
-
-
Ilic, K.1
Sanmiguel, P.J.2
Bennetzen, J.L.3
-
27
-
-
84907150192
-
The map-based sequence of the rice genome
-
IRGSP
-
IRGSP (2005) The map-based sequence of the rice genome. Nature 436:793-800
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
28
-
-
17844396639
-
Ancient haplotypes resulting from extensive molecular rearrangements in the wheat a genome have been maintained in species of three different ploidy levels
-
Isidore E, Scherrer B, Chalhoub B, Feuillet C, Keller B (2005) Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels. Genome Res 15:526-536
-
(2005)
Genome Res
, vol.15
, pp. 526-536
-
-
Isidore, E.1
Scherrer, B.2
Chalhoub, B.3
Feuillet, C.4
Keller, B.5
-
29
-
-
4944239027
-
Pack-MULE transposable elements mediate gene evolution in plants
-
Jiang N, Bao Z, Zhang X, Eddy SR, Wessler SR (2004a) Pack-MULE transposable elements mediate gene evolution in plants. Nature 431:569-573
-
(2004)
Nature
, vol.431
, pp. 569-573
-
-
Jiang, N.1
Bao, Z.2
Zhang, X.3
Eddy, S.R.4
Wessler, S.R.5
-
30
-
-
1542321148
-
Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs)
-
Jiang N, Feschotte C, Zhang X, Wessler SR (2004b) Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs). Curr Opin Plant Biol 7:115-119
-
(2004)
Curr Opin Plant Biol
, vol.7
, pp. 115-119
-
-
Jiang, N.1
Feschotte, C.2
Zhang, X.3
Wessler, S.R.4
-
31
-
-
33745435776
-
Arabidopsis SHORT HYPOCOTYL under BLUE1 contains SPX and EXS domains and acts in cryptochrome signaling
-
Kang X, Ni M (2006) Arabidopsis SHORT HYPOCOTYL UNDER BLUE1 contains SPX and EXS domains and acts in cryptochrome signaling. Plant Cell 18:921-934
-
(2006)
Plant Cell
, vol.18
, pp. 921-934
-
-
Kang, X.1
Ni, M.2
-
32
-
-
0035103949
-
Evolutionary history of the grasses
-
Kellogg EA (2001) Evolutionary history of the grasses. Plant Physiol 125:1198-1205
-
(2001)
Plant Physiol
, vol.125
, pp. 1198-1205
-
-
Kellogg, E.A.1
-
33
-
-
0031239092
-
Origin, dispersal, cultivation and variation of rice
-
Khush GS (1997) Origin, dispersal, cultivation and variation of rice. Plant Mol Biol 35:25-34
-
(1997)
Plant Mol Biol
, vol.35
, pp. 25-34
-
-
Khush, G.S.1
-
34
-
-
5144230950
-
Gene loss and movement in the maize genome
-
Lai J, Ma J, Swigonova Z, Ramakrishna W, Linton E, Llaca V, Tanyolac B, Park YJ, Jeong OY, Bennetzen JL, Messing J (2004) Gene loss and movement in the maize genome. Genome Res 14:1924-1931
-
(2004)
Genome Res
, vol.14
, pp. 1924-1931
-
-
Lai, J.1
Ma, J.2
Swigonova, Z.3
Ramakrishna, W.4
Linton, E.5
Llaca, V.6
Tanyolac, B.7
Park, Y.J.8
Jeong, O.Y.9
Bennetzen, J.L.10
Messing, J.11
-
35
-
-
21144454436
-
Gene movement by Helitron transposons contributes to the haplotype variability of maize
-
Lai J, Li Y, Messing J, Dooner HK (2005) Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci USA 102:9068-9073
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 9068-9073
-
-
Lai, J.1
Li, Y.2
Messing, J.3
Dooner, H.K.4
-
36
-
-
2342466982
-
Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice
-
Ma J, Devos KM, Bennetzen JL (2004) Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice. Genome Res 14:860-869
-
(2004)
Genome Res
, vol.14
, pp. 860-869
-
-
Ma, J.1
Devos, K.M.2
Bennetzen, J.L.3
-
37
-
-
23344439234
-
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes
-
Ma J, SanMiguel P, Lai J, Messing J, Bennetzen JL (2005) DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes. Genetics 170:1209-1220
-
(2005)
Genetics
, vol.170
, pp. 1209-1220
-
-
Ma, J.1
Sanmiguel, P.2
Lai, J.3
Messing, J.4
Bennetzen, J.L.5
-
38
-
-
0033854088
-
Rice transposable elements: A survey of 73,000 sequence-tagged-connectors
-
Mao L, Wood TC, Yu Y, Budiman MA, Tomkins J, Woo S-S, Sasinowski M, Presting G, Frisch D, Goff S, Dean RA, Wing RA (2000) Rice transposable elements: a survey of 73,000 sequence-tagged-connectors. Genome Res 10:982-990
-
(2000)
Genome Res
, vol.10
, pp. 982-990
-
-
Mao, L.1
Wood, T.C.2
Yu, Y.3
Budiman, M.A.4
Tomkins, J.5
Woo, S.-S.6
Sasinowski, M.7
Presting, G.8
Frisch, D.9
Goff, S.10
Dean, R.A.11
Wing, R.A.12
-
39
-
-
0034518158
-
VISTA : vvisualizing global DNA sequence alignments of arbitrary length
-
Mayor C, Brudno M, Schwartz JR, Poliakov A, Rubin EM, Frazer KA, Pachter LS, Dubchak I (2000) VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinformatics 16:1046-1047
-
(2000)
Bioinformatics
, vol.16
, pp. 1046-1047
-
-
Mayor, C.1
Brudno, M.2
Schwartz, J.R.3
Poliakov, A.4
Rubin, E.M.5
Frazer, K.A.6
Pachter, L.S.7
Dubchak, I.8
-
40
-
-
0042219051
-
Wild QTLs for rice improvement
-
Rockwood W (ed) IRRI, Philippines
-
McCouch S, Thompson M, Septiningsih E, Moncada P, Li J, McClung A, Tai T, Guimaraes E, Moon H, Ahn S (2001) Wild QTLs for rice improvement. In Rockwood W (ed) Proceedings of the Chandler symposium: rice research and production in the 21st century, vol 15-17. IRRI, Philippines, pp 151-169
-
(2001)
Proceedings of the Chandler Symposium: Rice Research and Production in the 21st Century
, vol.15-17
, pp. 151-169
-
-
McCouch, S.1
Thompson, M.2
Septiningsih, E.3
Moncada, P.4
Li, J.5
McClung, A.6
Tai, T.7
Guimaraes, E.8
Moon, H.9
Ahn, S.10
-
42
-
-
25144488228
-
Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
-
Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, Rafalski A (2005) Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize. Nat Genet 37:997-1002
-
(2005)
Nat Genet
, vol.37
, pp. 997-1002
-
-
Morgante, M.1
Brunner, S.2
Pea, G.3
Fengler, K.4
Zuccolo, A.5
Rafalski, A.6
-
43
-
-
0036944979
-
Sequence variation in the gene encoding the 10-kDa prolamin in Oryza (Poaceae). I. Phylogenetic Implications
-
Mullins I, Hilu K (2002) Sequence variation in the gene encoding the 10-kDa prolamin in Oryza (Poaceae). I. Phylogenetic Implications. Theor Appl Genet 105:841-846
-
(2002)
Theor Appl Genet
, vol.105
, pp. 841-846
-
-
Mullins, I.1
Hilu, K.2
-
44
-
-
15244354761
-
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes
-
Nishikawa T, Vaughan DA, Kadowaki K-i (2005) Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes. Theor Appl Genet 110:696-705
-
(2005)
Theor Appl Genet
, vol.110
, pp. 696-705
-
-
Nishikawa, T.1
Vaughan, D.A.2
K-I, K.3
-
45
-
-
33845593719
-
Ancestral rice blocks define multiple related regions in the maize genome
-
Odland W, Baumgarten A, Phillips R (2006) Ancestral rice blocks define multiple related regions in the maize genome. Crop Sci 46:S41-S48
-
(2006)
Crop Sci
, vol.46
-
-
Odland, W.1
Baumgarten, A.2
Phillips, R.3
-
46
-
-
33749392949
-
Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
Piegu B, Guyot R, Picault N, Roulin A, Saniyal A, Kim H, Collura K, Brar DS, Jackson S, Wing RA, Panaud O (2006) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res 16:1262-1269
-
(2006)
Genome Res
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Saniyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
Panaud, O.11
-
47
-
-
0035576432
-
Genomic change and gene silencing in polyploids
-
Pikaard CS (2001) Genomic change and gene silencing in polyploids. Trends Genet 17:675-677
-
(2001)
Trends Genet
, vol.17
, pp. 675-677
-
-
Pikaard, C.S.1
-
48
-
-
8444232039
-
Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice
-
Podlaha O, Zhang J (2004) Nonneutral evolution of the transcribed pseudogene Makorin1-p1 in mice. Mol Biol Evol 21:2202-2209
-
(2004)
Mol Biol Evol
, vol.21
, pp. 2202-2209
-
-
Podlaha, O.1
Zhang, J.2
-
49
-
-
0013630297
-
Nested retrotransposons in the intergenic regions of the maize genome
-
SanMiguel P, Tikhonov A, Jin YK, Motchoulskaia N, Zakharov D, Melake-Berhan A, Springer PS, Edwards KJ, Lee M, Avramova Z, Bennetzen JL (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768
-
(1996)
Science
, vol.274
, pp. 765-768
-
-
Sanmiguel, P.1
Tikhonov, A.2
Jin, Y.K.3
Motchoulskaia, N.4
Zakharov, D.5
Melake-Berhan, A.6
Springer, P.S.7
Edwards, K.J.8
Lee, M.9
Avramova, Z.10
Bennetzen, J.L.11
-
50
-
-
0031707062
-
The paleontology of intergene retrotransposons of maize
-
SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL (1998) The paleontology of intergene retrotransposons of maize. Nat Genet 20:43-45
-
(1998)
Nat Genet
, vol.20
, pp. 43-45
-
-
Sanmiguel, P.1
Gaut, B.S.2
Tikhonov, A.3
Nakajima, Y.4
Bennetzen, J.L.5
-
51
-
-
21144437096
-
Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome
-
Scherrer B, Isidore E, Klein P, Kim JS, Bellec A, Chalhoub B, Keller B, Feuillet C (2005) Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome. Plant Cell 17:361-374
-
(2005)
Plant Cell
, vol.17
, pp. 361-374
-
-
Scherrer, B.1
Isidore, E.2
Klein, P.3
Kim, J.S.4
Bellec, A.5
Chalhoub, B.6
Keller, B.7
Feuillet, C.8
-
52
-
-
0344005444
-
Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon
-
Septiningsih E, Prasetiyono J, Lubis E, Tai T, Tjubaryat T, Moeljopawiro S, McCouch S (2003a) Identification of quantitative trait loci for yield and yield components in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1419-1432
-
(2003)
Theor Appl Genet
, vol.107
, pp. 1419-1432
-
-
Septiningsih, E.1
Prasetiyono, J.2
Lubis, E.3
Tai, T.4
Tjubaryat, T.5
Moeljopawiro, S.6
McCouch, S.7
-
53
-
-
0344436676
-
Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon
-
Septiningsih E, Trijatmiko K, Moeljopawiro S, McCouch S (2003b) Identification of quantitative trait loci for grain quality in an advanced backcross population derived from the Oryza sativa variety IR64 and the wild relative O. rufipogon. Theor Appl Genet 107:1433-1441
-
(2003)
Theor Appl Genet
, vol.107
, pp. 1433-1441
-
-
Septiningsih, E.1
Trijatmiko, K.2
Moeljopawiro, S.3
McCouch, S.4
-
54
-
-
0031200915
-
Evolution of the rice Xa21 disease resistance gene family
-
Song WY, Pi LY, Wang GL, Gardner J, Holsten T, Ronald PC (1997) Evolution of the rice Xa21 disease resistance gene family. Plant Cell 9:1279-1287
-
(1997)
Plant Cell
, vol.9
, pp. 1279-1287
-
-
Song, W.Y.1
Pi, L.Y.2
Wang, G.L.3
Gardner, J.4
Holsten, T.5
Ronald, P.C.6
-
55
-
-
0030880972
-
Seed banks and molecular maps: Unlocking genetic potential from the wild
-
Tanksley SD, McCouch SR (1997) Seed banks and molecular maps: unlocking genetic potential from the wild. Science 277:1063-1066
-
(1997)
Science
, vol.277
, pp. 1063-1066
-
-
Tanksley, S.D.1
McCouch, S.R.2
-
56
-
-
0034084963
-
The Complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4
-
Tarchini R, Biddle P, Wineland R, Tingey S, Rafalski A (2000) The Complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4. Plant Cell 12:381-392
-
(2000)
Plant Cell
, vol.12
, pp. 381-392
-
-
Tarchini, R.1
Biddle, P.2
Wineland, R.3
Tingey, S.4
Rafalski, A.5
-
57
-
-
0033594895
-
Colinearity and its exceptions in orthologous adh regions of maize and sorghum
-
Tikhonov AP, SanMiguel PJ, Nakajima Y, Gorenstein NM, Bennetzen JL, Avramova Z (1999) Colinearity and its exceptions in orthologous adh regions of maize and sorghum. Proc Natl Acad Sci USA 96:7409-7414
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 7409-7414
-
-
Tikhonov, A.P.1
Sanmiguel, P.J.2
Nakajima, Y.3
Gorenstein, N.M.4
Bennetzen, J.L.5
Avramova, Z.6
-
58
-
-
0031471762
-
Repetitive sequences: Cause for variation in genome size and chromosome morphology in the genus Oryza
-
Uozu S, Ikehashi H, Ohmido N, Ohtsubo H, Ohtsubo E, Fukui K (1997) Repetitive sequences: cause for variation in genome size and chromosome morphology in the genus Oryza. Plant Mol Biol 35:791-799
-
(1997)
Plant Mol Biol
, vol.35
, pp. 791-799
-
-
Uozu, S.1
Ikehashi, H.2
Ohmido, N.3
Ohtsubo, H.4
Ohtsubo, E.5
Fukui, K.6
-
61
-
-
12844272411
-
A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: Recombination, rearrangements and repeats
-
Wicker T, Zimmermann W, Perovic D, Paterson AH, Ganal M, Graner A, Stein N (2005) A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats. Plant J 41:184-194
-
(2005)
Plant J
, vol.41
, pp. 184-194
-
-
Wicker, T.1
Zimmermann, W.2
Perovic, D.3
Paterson, A.H.4
Ganal, M.5
Graner, A.6
Stein, N.7
-
62
-
-
0029856798
-
Genes from wild rice improve yield
-
Xiao J, Grandillo S, Ahn SN, McCouch SR, Tanksley SD, Yuan L (1996) Genes from wild rice improve yield. Nature 384:223-224
-
(1996)
Nature
, vol.384
, pp. 223-224
-
-
Xiao, J.1
Grandillo, S.2
Ahn, S.N.3
McCouch, S.R.4
Tanksley, S.D.5
Yuan, L.6
-
63
-
-
33847275983
-
Maize haplotype with a helitron-amplified cytidine deaminase gene copy
-
Xu JH, Messing J (2006) Maize haplotype with a helitron-amplified cytidine deaminase gene copy. BMC Genet 7:52-63
-
(2006)
BMC Genet
, vol.7
, pp. 52-63
-
-
Xu, J.H.1
Messing, J.2
-
64
-
-
33745944196
-
Transcriptional regulatory networks in cellular response and tolerance to dehydration and cold stresses
-
Yamaguchi-Shinozaki K, Shinozaki K (2006) Transcriptional regulatory networks in cellular response and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 57:781-803
-
(2006)
Annu Rev Plant Biol
, vol.57
, pp. 781-803
-
-
Yamaguchi-Shinozaki, K.1
Shinozaki, K.2
-
65
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
Yu J, Hu S, Wang J, Wong GK-S, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X et al (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Gk-S, W.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
-
66
-
-
20144366003
-
The genomes of Oryza sativa: A history of duplications
-
Yu J, Wang J, Lin W, Li S, Li H, Zhou J, Ni P, Dong W, Hu S, Zeng C et al (2005) The genomes of Oryza sativa: a history of duplications. PLoS Biol 3:e38
-
(2005)
PLoS Biol
, vol.3
, pp. 38
-
-
Yu, J.1
Wang, J.2
Lin, W.3
Li, S.4
Li, H.5
Zhou, J.6
Ni, P.7
Dong, W.8
Hu, S.9
Zeng, C.10
-
67
-
-
1642343363
-
PIF- and Pong-like transposable elements: Distribution, evolution and relationship with tourist-like miniature inverted-repeat transposable elements
-
Zhang X, Jiang N, Feschotte C, Wessler SR (2004) PIF- and Pong-like transposable elements: distribution, evolution and relationship with tourist-like miniature inverted-repeat transposable elements. Genetics 166:971-986
-
(2004)
Genetics
, vol.166
, pp. 971-986
-
-
Zhang, X.1
Jiang, N.2
Feschotte, C.3
Wessler, S.R.4
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