-
1
-
-
84876354602
-
Physico-chemical foundations underpinning microarray and next-generation sequencing experiments
-
A. Harrison, H. Binder, A. Buhot, C.J. Burden, E. Carlon, C. Gibas, L.J. Gamble, A. Halperin, J. Hooyberghs, and D.P. Kreil Physico-chemical foundations underpinning microarray and next-generation sequencing experiments Nucleic Acids Res. 41 2013 2779 2796
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2779-2796
-
-
Harrison, A.1
Binder, H.2
Buhot, A.3
Burden, C.J.4
Carlon, E.5
Gibas, C.6
Gamble, L.J.7
Halperin, A.8
Hooyberghs, J.9
Kreil, D.P.10
-
2
-
-
81255175663
-
Kinetics and dynamics of DNA hybridization
-
Y. Yin, and X.S. Zhao Kinetics and dynamics of DNA hybridization Acc. Chem. Res. 44 2011 1172 1181
-
(2011)
Acc. Chem. Res.
, vol.44
, pp. 1172-1181
-
-
Yin, Y.1
Zhao, X.S.2
-
3
-
-
84863116178
-
Optimizing the specificity of nucleic acid hybridization
-
D.Y. Zhang, S.X. Chen, and P. Yin Optimizing the specificity of nucleic acid hybridization Nat. Chem. 4 2012 208 214
-
(2012)
Nat. Chem.
, vol.4
, pp. 208-214
-
-
Zhang, D.Y.1
Chen, S.X.2
Yin, P.3
-
4
-
-
13944271437
-
Physicochemical perspectives on DNA microarray and biosensor technologies
-
DOI 10.1016/j.tibtech.2005.01.004, PII S0167779905000260
-
R. Levicky, and A. Horgan Physicochemical perspectives on DNA microarray and biosensor technologies Trends Biotechnol. 23 2005 143 149 (Pubitemid 40269847)
-
(2005)
Trends in Biotechnology
, vol.23
, Issue.3
, pp. 143-149
-
-
Levicky, R.1
Horgan, A.2
-
5
-
-
0034663496
-
From DNA biosensors to gene chips
-
J. Wang Survey and summary from DNA biosensors to gene chips Nucleic Acids Res. 28 2000 3011 3016 (Pubitemid 30624089)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.16
, pp. 3011-3016
-
-
Wang, J.1
-
8
-
-
2342545547
-
Fluorescence in situ hybridization
-
Springer New York
-
J.M. Bartlett Fluorescence in situ hybridization Molecular Diagnosis of Cancer 2004 Springer New York 77 87
-
(2004)
Molecular Diagnosis of Cancer
, pp. 77-87
-
-
Bartlett, J.M.1
-
10
-
-
79958080423
-
Thermodynamics of DNA hybridization on surfaces
-
T.J. Schmitt, and T.A. Knotts Thermodynamics of DNA hybridization on surfaces J. Chem. Phys. 134 2011 205105
-
(2011)
J. Chem. Phys.
, vol.134
, pp. 205105
-
-
Schmitt, T.J.1
Knotts, T.A.2
-
11
-
-
23144442980
-
DNA recognition interfaces: The influence of interfacial design on the efficiency and kinetics of hybridization
-
DOI 10.1021/la050725m
-
E.L. Wong, E. Chow, and J.J. Gooding DNA recognition interfaces: the influence of interfacial design on the efficiency and kinetics of hybridization Langmuir 21 2005 6957 6965 (Pubitemid 41084484)
-
(2005)
Langmuir
, vol.21
, Issue.15
, pp. 6957-6965
-
-
Wong, E.L.S.1
Chow, E.2
Gooding, J.J.3
-
13
-
-
77953156601
-
DNA surface hybridization: Comparison of theory and experiment
-
D. Irving, P. Gong, and R. Levicky DNA surface hybridization: comparison of theory and experiment J. Phys. Chem. B 114 2010 7631 7640
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7631-7640
-
-
Irving, D.1
Gong, P.2
Levicky, R.3
-
18
-
-
33646182577
-
Thermodynamics of competitive surface adsorption on DNA microarrays
-
H. Binder Thermodynamics of competitive surface adsorption on DNA microarrays J. Phys.: Condens. Matter 18 2006 S491
-
(2006)
J. Phys.: Condens. Matter
, vol.18
, pp. 491
-
-
Binder, H.1
-
19
-
-
53349172180
-
Nucleotide-surface interactions in DNA-modified Au-nanoparticle conjugates: Sequence effects on reactivity and hybridization
-
K.A. Brown, S. Park, and K. Hamad-Schifferli Nucleotide-surface interactions in DNA-modified Au-nanoparticle conjugates: sequence effects on reactivity and hybridization J. Phys. Chem. C 112 2008 7517 7521
-
(2008)
J. Phys. Chem. C
, vol.112
, pp. 7517-7521
-
-
Brown, K.A.1
Park, S.2
Hamad-Schifferli, K.3
-
20
-
-
0035945270
-
The effect of surface probe density on DNA hybridization
-
A.W. Peterson, R.J. Heaton, and R.M. Georgiadis The effect of surface probe density on DNA hybridization Nucleic Acids Res. 29 2001 5163 5168 (Pubitemid 34065435)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.24
, pp. 5163-5168
-
-
Peterson, A.W.1
Heaton, R.J.2
Georgiadis, R.M.3
-
21
-
-
0037210349
-
Electric potential control of DNA immobilization on gold electrode
-
DOI 10.1016/S0956-5663(02)00115-X, PII S095656630200115X
-
C. Ge, J. Liao, W. Yu, and N. Gu Electric potential control of DNA immobilization on gold electrode Biosens. Bioelectron. 18 2003 53 58 (Pubitemid 35356493)
-
(2003)
Biosensors and Bioelectronics
, vol.18
, Issue.1
, pp. 53-58
-
-
Ge, C.1
Liao, J.2
Yu, W.3
Gu, N.4
-
22
-
-
77953608427
-
An electrostatic model for DNA surface hybridization
-
I.Y. Wong, and N.A. Melosh An electrostatic model for DNA surface hybridization Biophys. J. 98 2010 2954 2963
-
(2010)
Biophys. J.
, vol.98
, pp. 2954-2963
-
-
Wong, I.Y.1
Melosh, N.A.2
-
23
-
-
67649872011
-
Kinetics and thermodynamics of DNA hybridization on gold nanoparticles
-
C. Chen, W. Wang, J. Ge, and X.S. Zhao Kinetics and thermodynamics of DNA hybridization on gold nanoparticles Nucleic Acids Res. 37 2009 3756 3765
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3756-3765
-
-
Chen, C.1
Wang, W.2
Ge, J.3
Zhao, X.S.4
-
24
-
-
33646172937
-
On the hybridization isotherms of DNA microarrays: The Langmuir model and its extensions
-
A. Halperin, A. Buhot, and E. Zhulina On the hybridization isotherms of DNA microarrays: the Langmuir model and its extensions J. Phys. Condens. Matter 18 2006 S463
-
(2006)
J. Phys. Condens. Matter
, vol.18
, pp. 463
-
-
Halperin, A.1
Buhot, A.2
Zhulina, E.3
-
25
-
-
63449121623
-
Curvature effects in DNA: Au nanoparticle conjugates
-
K.B. Cederquist, and C.D. Keating Curvature effects in DNA: Au nanoparticle conjugates ACS Nano 3 2009 256 260
-
(2009)
ACS Nano
, vol.3
, pp. 256-260
-
-
Cederquist, K.B.1
Keating, C.D.2
-
26
-
-
0037319670
-
Surface electrostatic effects in oligonucleotide microarrays: Control and optimization of binding thermodynamics
-
DOI 10.1002/bip.10271
-
A. Vainrub, and B. Montgomery Pettitt Surface electrostatic effects in oligonucleotide microarrays: control and optimization of binding thermodynamics Biopolymers 68 2003 265 270 (Pubitemid 36222404)
-
(2003)
Biopolymers
, vol.68
, Issue.2
, pp. 265-270
-
-
Vainrub, A.1
Pettitt, B.M.2
-
27
-
-
72849122589
-
Directed hybridization and melting of DNA linkers using counterion-screened electric fields
-
I.Y. Wong, and N.A. Melosh Directed hybridization and melting of DNA linkers using counterion-screened electric fields Nano Lett. 9 2009 3521 3526
-
(2009)
Nano Lett.
, vol.9
, pp. 3521-3526
-
-
Wong, I.Y.1
Melosh, N.A.2
-
29
-
-
23244444650
-
Brush effects on DNA chips: Thermodynamics, kinetics, and design guidelines
-
DOI 10.1529/biophysj.105.063479
-
A. Halperin, A. Buhot, and E. Zhulina Brush effects on DNA chips: thermodynamics, kinetics, and design guidelines Biophys. J. 89 2005 796 811 (Pubitemid 41098967)
-
(2005)
Biophysical Journal
, vol.89
, Issue.2
, pp. 796-811
-
-
Halperin, A.1
Buhot, A.2
Zhulina, E.B.3
-
30
-
-
84859910629
-
Optimization of DNA hybridization efficiency by pH-driven nanomechanical bending
-
J. Zhang, H.P. Lang, G. Yoshikawa, and C. Gerber Optimization of DNA hybridization efficiency by pH-driven nanomechanical bending Langmuir 28 2012 6494 6501
-
(2012)
Langmuir
, vol.28
, pp. 6494-6501
-
-
Zhang, J.1
Lang, H.P.2
Yoshikawa, G.3
Gerber, C.4
-
32
-
-
0036749178
-
Electrochemical DNA hybridization biosensors
-
J.J. Gooding Electrochemical DNA hybridization biosensors Electroanalysis 14 2002 1149 1156
-
(2002)
Electroanalysis
, vol.14
, pp. 1149-1156
-
-
Gooding, J.J.1
-
33
-
-
84862504546
-
Development and evaluation of a loop-mediated isothermal amplification method in conjunction with an enzyme-linked immunosorbent assay for specific detection of Salmonella serogroup D
-
H. Ravan, and R. Yazdanparast Development and evaluation of a loop-mediated isothermal amplification method in conjunction with an enzyme-linked immunosorbent assay for specific detection of Salmonella serogroup D Anal. Chim. Acta 733 2012 64 70
-
(2012)
Anal. Chim. Acta
, vol.733
, pp. 64-70
-
-
Ravan, H.1
Yazdanparast, R.2
-
34
-
-
84879234620
-
Loop region-specific oligonucleotide probes for loop-mediated isothermal amplification - Enzyme-linked immunosorbent assay truly minimize the instrument needed for detection process
-
H. Ravan, and R. Yazdanparast Loop region-specific oligonucleotide probes for loop-mediated isothermal amplification - enzyme-linked immunosorbent assay truly minimize the instrument needed for detection process Anal. Biochem. 439 2013 102 108
-
(2013)
Anal. Biochem.
, vol.439
, pp. 102-108
-
-
Ravan, H.1
Yazdanparast, R.2
-
35
-
-
70349531272
-
Nucleic acid conjugated nanomaterials for enhanced molecular recognition
-
H. Wang, R. Yang, L. Yang, and W. Tan Nucleic acid conjugated nanomaterials for enhanced molecular recognition ACS Nano 3 2009 2451 2460
-
(2009)
ACS Nano
, vol.3
, pp. 2451-2460
-
-
Wang, H.1
Yang, R.2
Yang, L.3
Tan, W.4
-
36
-
-
46049114290
-
Carbon nanotube-quenched fluorescent oligonucleotides: Probes that fluoresce upon hybridization
-
DOI 10.1021/ja800604z
-
R. Yang, J. Jin, Y. Chen, N. Shao, H. Kang, Z. Xiao, Z. Tang, Y. Wu, Z. Zhu, and W. Tan Carbon nanotube-quenched fluorescent oligonucleotides: probes that fluoresce upon hybridization J. Am. Chem. Soc. 130 2008 8351 8358 (Pubitemid 351898555)
-
(2008)
Journal of the American Chemical Society
, vol.130
, Issue.26
, pp. 8351-8358
-
-
Yang, R.1
Jin, J.2
Chen, Y.3
Shao, N.4
Kang, H.5
Xiao, Z.6
Tang, Z.7
Wu, Y.8
Zhu, Z.9
Tan, W.10
-
37
-
-
25444450344
-
Thermodynamics of DNA hybridization on gold nanoparticles
-
DOI 10.1021/ja052352h
-
J. Xu, and S.L. Craig Thermodynamics of DNA hybridization on gold nanoparticles J. Am. Chem. Soc. 127 2005 13227 13231 (Pubitemid 41377614)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.38
, pp. 13227-13231
-
-
Xu, J.1
Craig, S.L.2
-
38
-
-
0034669474
-
A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles
-
L.M. Demers, C.A. Mirkin, R.C. Mucic, R.A. Reynolds, R.L. Letsinger, R. Elghanian, and G. Viswanadham A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles Anal. Chem. 72 2000 5535 5541
-
(2000)
Anal. Chem.
, vol.72
, pp. 5535-5541
-
-
Demers, L.M.1
Mirkin, C.A.2
Mucic, R.C.3
Reynolds, R.A.4
Letsinger, R.L.5
Elghanian, R.6
Viswanadham, G.7
-
39
-
-
63449092563
-
The role radius of curvature plays in thiolated oligonucleotide loading on gold nanoparticles
-
H.D. Hill, J.E. Millstone, M.J. Banholzer, and C.A. Mirkin The role radius of curvature plays in thiolated oligonucleotide loading on gold nanoparticles ACS Nano 3 2009 418 424
-
(2009)
ACS Nano
, vol.3
, pp. 418-424
-
-
Hill, H.D.1
Millstone, J.E.2
Banholzer, M.J.3
Mirkin, C.A.4
-
40
-
-
84864242526
-
Designed diblock oligonucleotide for the synthesis of spatially isolated and highly hybridizable functionalization of DNA-gold nanoparticle nanoconjugates
-
H. Pei, F. Li, Y. Wan, M. Wei, H. Liu, Y. Su, N. Chen, Q. Huang, and C. Fan Designed diblock oligonucleotide for the synthesis of spatially isolated and highly hybridizable functionalization of DNA-gold nanoparticle nanoconjugates J. Am. Chem. Soc. 134 2012 11876 11879
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 11876-11879
-
-
Pei, H.1
Li, F.2
Wan, Y.3
Wei, M.4
Liu, H.5
Su, Y.6
Chen, N.7
Huang, Q.8
Fan, C.9
-
41
-
-
0037433244
-
What controls the melting properties of DNA-linked gold nanoparticle assemblies?
-
DOI 10.1021/ja021096v
-
R. Jin, G. Wu, Z. Li, C.A. Mirkin, and G.C. Schatz What controls the melting properties of DNA-linked gold nanoparticle assemblies? J. Am. Chem. Soc. 125 2003 1643 1654 (Pubitemid 36206246)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.6
, pp. 1643-1654
-
-
Jin, R.1
Wu, G.2
Li, Z.3
Mirkin, C.A.4
Schatz, G.C.5
-
42
-
-
0030862620
-
Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays
-
DOI 10.1093/nar/25.6.1155
-
M. Shchepinov, S. Case-Green, and E. Southern Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays Nucleic Acids Res. 25 1997 1155 1161 (Pubitemid 27303206)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.6
, pp. 1155-1161
-
-
Shchepinov, M.S.1
Case-Green, S.C.2
Southern, E.M.3
-
43
-
-
84876565359
-
Efficient self-assembly of DNA-functionalized fluorophores and gold nanoparticles with DNA functionalized silicon surfaces: The effect of oligomer spacers
-
J.A. Milton, S. Patole, H. Yin, Q. Xiao, T. Brown, and T. Melvin Efficient self-assembly of DNA-functionalized fluorophores and gold nanoparticles with DNA functionalized silicon surfaces: the effect of oligomer spacers Nucleic Acids Res. 41 2013 e80
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 80
-
-
Milton, J.A.1
Patole, S.2
Yin, H.3
Xiao, Q.4
Brown, T.5
Melvin, T.6
-
44
-
-
33845573598
-
Maximizing DNA loading on a range of gold nanoparticle sizes
-
DOI 10.1021/ac0613582
-
S.J. Hurst, A.K. Lytton-Jean, and C.A. Mirkin Maximizing DNA loading on a range of gold nanoparticle sizes Anal. Chem. 78 2006 8313 8318 (Pubitemid 44932099)
-
(2006)
Analytical Chemistry
, vol.78
, Issue.24
, pp. 8313-8318
-
-
Hurst, S.J.1
Lytton-Jean, A.K.R.2
Mirkin, C.A.3
-
45
-
-
4344704162
-
The structural characterization of oligonucleotide-modified gold nanoparticle networks formed by DNA hybridization
-
S.-J. Park, A.A. Lazarides, J.J. Storhoff, L. Pesce, and C.A. Mirkin The structural characterization of oligonucleotide-modified gold nanoparticle networks formed by DNA hybridization J. Phys. Chem. B 108 2004 12375 12380
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 12375-12380
-
-
Park, S.-J.1
Lazarides, A.A.2
Storhoff, J.J.3
Pesce, L.4
Mirkin, C.A.5
-
46
-
-
84867458474
-
Effects of polyethylene glycol on DNA adsorption and hybridization on gold nanoparticles and graphene oxide
-
X. Zhang, P.-J.J. Huang, M.R. Servos, and J. Liu Effects of polyethylene glycol on DNA adsorption and hybridization on gold nanoparticles and graphene oxide Langmuir 28 2012 14330 14337
-
(2012)
Langmuir
, vol.28
, pp. 14330-14337
-
-
Zhang, X.1
Huang, P.-J.J.2
Servos, M.R.3
Liu, J.4
-
47
-
-
10744219790
-
Influence of the thiol position on the attachment and subsequent hybridization of thiolated DNA on gold surfaces
-
R. Wirtz, C. Walti, P. Tosch, M. Pepper, A. Davies, W. Germishuizen, and A. Middelberg Influence of the thiol position on the attachment and subsequent hybridization of thiolated DNA on gold surfaces Langmuir 20 2004 1527 1530
-
(2004)
Langmuir
, vol.20
, pp. 1527-1530
-
-
Wirtz, R.1
Walti, C.2
Tosch, P.3
Pepper, M.4
Davies, A.5
Germishuizen, W.6
Middelberg, A.7
-
48
-
-
0042367618
-
Base-dependent competitive adsorption of single-stranded DNA on gold
-
DOI 10.1021/ja035756n
-
H. Kimura-Suda, D.Y. Petrovykh, M.J. Tarlov, and L.J. Whitman Base-dependent competitive adsorption of single-stranded DNA on gold J. Am. Chem. Soc. 125 2003 9014 9015 (Pubitemid 36903812)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.30
, pp. 9014-9015
-
-
Kimura-Suda, H.1
Petrovykh, D.Y.2
Tarlov, M.J.3
Whitman, L.J.4
-
49
-
-
77950412604
-
Controlled and efficient hybridization achieved with DNA probes immobilized solely through preferential DNA-substrate interactions
-
S.M. Schreiner, D.F. Shudy, A.L. Hatch, A. Opdahl, L.J. Whitman, and D.Y. Petrovykh Controlled and efficient hybridization achieved with DNA probes immobilized solely through preferential DNA-substrate interactions Anal. Chem. 82 2010 2803 2810
-
(2010)
Anal. Chem.
, vol.82
, pp. 2803-2810
-
-
Schreiner, S.M.1
Shudy, D.F.2
Hatch, A.L.3
Opdahl, A.4
Whitman, L.J.5
Petrovykh, D.Y.6
-
50
-
-
33846053570
-
Independent control of grafting density and conformation of single-stranded DNA brushes
-
DOI 10.1073/pnas.0608568103
-
A. Opdahl, D.Y. Petrovykh, H. Kimura-Suda, M.J. Tarlov, and L.J. Whitman Independent control of grafting density and conformation of single-stranded DNA brushes Proc. Natl. Acad. Sci. U.S.A. 104 2007 9 14 (Pubitemid 46067976)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.1
, pp. 9-14
-
-
Opdahl, A.1
Petrovykh, D.Y.2
Kimura-Suda, H.3
Tarlov, M.J.4
Whitman, L.J.5
-
51
-
-
0035250210
-
DNA-directed assembly of gold nanowires on complementary surfaces
-
DOI 10.1002/1521-4095(200102)13:4<249::AID-ADMA249>3.0.CO;2-9
-
J.K. Mbindyo, B.D. Reiss, B.R. Martin, C.D. Keating, M.J. Natan, and T.E. Mallouk DNA-directed assembly of gold nanowires on complementary surfaces Adv. Mater. 13 2001 249 254 (Pubitemid 32255133)
-
(2001)
Advanced Materials
, vol.13
, Issue.4
, pp. 249-254
-
-
Mbindyo, J.K.N.1
Reiss, B.D.2
Martin, B.R.3
Keating, C.D.4
Natan, M.J.5
Mallouk, T.E.6
-
52
-
-
4644291833
-
Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles
-
DOI 10.1073/pnas.0406115101
-
H. Li, and L. Rothberg Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles Proc. Natl. Acad. Sci. U.S.A. 101 2004 14036 14039 (Pubitemid 39305025)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.39
, pp. 14036-14039
-
-
Li, H.1
Rothberg, L.2
-
53
-
-
0033884336
-
Immobilization of nucleic acids at solid surfaces: Effect of oligonucleotide length on layer assembly
-
A. Steel, R. Levicky, T. Herne, and M.J. Tarlov Immobilization of nucleic acids at solid surfaces: effect of oligonucleotide length on layer assembly Biophys. J. 79 2000 975 981 (Pubitemid 30626188)
-
(2000)
Biophysical Journal
, vol.79
, Issue.2
, pp. 975-981
-
-
Steel, A.B.1
Levicky, R.L.2
Herne, T.M.3
Tarlov, M.J.4
-
54
-
-
0346910405
-
Controlling the adsorption and reactivity of DNA on gold
-
T. Aqua, R. Naaman, and S. Daube Controlling the adsorption and reactivity of DNA on gold Langmuir 19 2003 10573 10580
-
(2003)
Langmuir
, vol.19
, pp. 10573-10580
-
-
Aqua, T.1
Naaman, R.2
Daube, S.3
-
55
-
-
7544228222
-
Changes in oligonucleotide conformation on nanoparticle surfaces by modification with mercaptohexanol
-
S. Park, K.A. Brown, and K. Hamad-Schifferli Changes in oligonucleotide conformation on nanoparticle surfaces by modification with mercaptohexanol Nano Lett. 4 2004 1925 1929
-
(2004)
Nano Lett.
, vol.4
, pp. 1925-1929
-
-
Park, S.1
Brown, K.A.2
Hamad-Schifferli, K.3
|