DNA recognition interfaces: The influence of interfacial design on the efficiency and kinetics of hybridization

Langmuir

Volumn 21, Issue 15, 2005, Pages 6957-6965

  Wong, Elicia L S ^a   Chow, Edith ^a   Gooding, J Justin ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; ANISOTROPY; DRUG PRODUCTS; HYDROGEN BONDS; HYDROPHILICITY; INTERFACES (MATERIALS); MOLECULAR STRUCTURE; NUCLEATION; SURFACE CHEMISTRY;

DIAGNOSTIC DEVICES; DILUENT LAYERS; HYBRIDIZATION; RATIONAL FREEDOMS;

DNA;

DNA;

ARTICLE; CHEMISTRY; CRYSTALLIZATION; DNA PROBE; ELECTROCHEMISTRY; KINETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE;

BASE SEQUENCE; CRYSTALLIZATION; DNA; DNA PROBES; ELECTROCHEMISTRY; KINETICS; NUCLEIC ACID HYBRIDIZATION;

EID: 23144442980     PISSN: 07437463     EISSN: None     Source Type: Journal    
DOI: 10.1021/la050725m     Document Type: Article

References (54)

1. Wang, J. Nucleic Acids Res. 2000, 28, 3011-3016.
2. Gooding, J. J. Electroanalysis 2002, 14, 1149-1156.
3. Gooding, J. J.; Mearns, F.; Yang, W.; Liu, J. Electroanalysis 2003, 15, 81-96.
4. Allara, D. L. Biosens. Bioelectron. 1995, 10, 771-783.
5. Ferretti, S.; Paynter, S.; Russell, D. A.; Sapsford, K. E.; Richardson, D. J. TrAC, Trends Anal. Chem. 2000, 19, 530-540.
6. Belosludtsev, Y.; Iverson, B.; Lemeshko, S.; Eggers, R.; Wiese, R.; Lee, S.; Powdrill, T.; Hogan, M. Anal. Biochem. 2001, 292, 250-256.
7. Chan, V.; Graves, D. J.; Fortina, P.; McKenzie, S. E. Langmuir 1997, 13, 320-329.
8. Lemeshko, S. V.; Powdrill, T.; Belosludtsev, Y. Y.; Hogan, M. Nucleic Acids Res. 2001, 29, 3051-3058.
9. Xu, C.; Cai, H.; Xu, Q.; He, P. G.; Fang, Y. Z. Fresenius' J. Anal. Chem. 2001, 369, 428-432.
10. Yeung, E. S.; Kang, S. H. Abstr. Pap.-Am. Chem. Soc. 2001, 222, U378-U378.
11. Caillat, P.; David, D.; Belleville, M.; Clerc, F.; Massit, C.; Revol-Cavalier, F.; Peltie, P.; Livache, T.; Bidan, G.; Roget, A.; Crapez, E. Sens. Actuators, B 1999, 61, 154-162.
12. Livache, T.; Roget, A.; Dejean, E.; Barthet, C.; Bidan, G.; Teoule, R. Nucleic Acids Res. 1994, 22, 2915-2921.
13. Nilsson, P.;Persson, B.; Uhlen, M.; Nygren, P. A. Anal. Biochem. 1995, 224, 400-408.
14. Beier, M.; Hoheisel, J. D. Nucleic Acids Res. 1999, 27, 1970-1977.
15. Cohen, G.; Deutsch, J.; Fineberg, J.; Levine, A. Nucleic Acids Res. 1997, 25, 911-912.
16. Millan, K. M.; Mikkelsen, S. R. Anal. Chem. 1993, 65, 2317-2323.
17. Chrisey, L. A.; Lee, G. U.; OFerrall, C. E. Nucleic Acids Res. 1996, 24, 3031-3039.
18. Levicky, R.; Herne, T. M.; Tarlov, M. J.; Satija, S. K. J. Am. Chem. Soc. 1998, 120, 9787-9792.
19. Peterlinz, K. A.; Georgiadis, R. M.; Herne, T. M.; Tarlov, M. J. J. Am. Chem. Soc. 1997, 119, 3401-3402.
20. Herne, T. M.; Tarlov, M. J. J. Am. Chem. Soc. 1997, 119, 8916-8920.
21. Petrovykh, D. Y.; Kimura-Suda, H.; Whitman, L. J.; Tarlov, M. J. J. Am. Chem. Soc. 2003, 125, 5219-5226.
22. Petrovykh, D. Y., Kimura-Suda, H.; Tarlov, M. J.; Whitman, L. J. Langmuir 2004, 20, 429-440.
23. Steel, A. B.; Herne, T. M.; Tarlov, M. J. Anal. Chem. 1998, 70, 4670-4677.
24. Steel, A. B.; Herne, T. M.; Tarlov, M. J. Bioconjugate Chem. 1999, 10, 419-423.
25. Steel, A. B.; Levicky, R. L.; Herne, T. M.; Tarlov, M. J. Biophys. J. 2000, 79, 975-981.
26. Peterson, A. W.; Heaton, R. J.; Georgiadis, R. M. Nucleic Acids Res. 2001, 29, 5163-5168.
27. Peterson, A. W.; Wolf, L. K.; Georgiadis, R. M. J. Am. Chem. Soc. 2002, 124, 14601-14607.
28. Drummond, T. G.; Hill, M. G.; Barton, J. K. J. Am. Chem. Soc. 2004, 126, 15010-15011.
29. Chan, V.; Graves, D. J.; McKenzie, S. E. Biophys. J. 1995, 69, 2243-2255.
30. Wong, E. L. S.; Erohkin, P.; Gooding, J. J. Electrochem. Commun. 2004, 6, 648-654.
31. Wong, E. L. S.; Gooding, J. J. Anal. Chem. 2003, 75, 3845-3852.
32. Huang, E.; Satjapipat, M.; Han, S. B.; Zhou, F. M. Langmuir 2001, 17, 1215-1224.
33. Peterlinz, K. A.; Georgiadis, R. M. J. Am. Chem. Soc. 1997, 119, 3401-3402.
34. Rajski, S. R.; Kumar, S.; Roberts, R. J.; Barton, J. K. J. Am. Chem. Soc. 1999, 121, 5615-5616.
35. Boon, E. M.; Pope, M. A.; Williams, S. D.; David, S. S.; Barton, J. K. Biochemistry 2002, 41, 8464-8470.
36. Boon, E. M.; Livingston, A. L.; Chmiel, N. H.; David, S. S.; Barton, J. K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 12543-12547.
37. Wong, E. L. S.; Mearns, F. J.; Gooding, J. J. Sens. Actuators, B 2005, In press.
38. Okahata, Y.; Kawase, M.; Niikura, K.; Ohtake, F.; Furusawa, H.; Ebara, Y. Anal. Chem. 1998, 70, 1288-1296.
39. Watterson, J.; Piunno, P. A. E.; Krull, U. J. Anal. Chim. Acta 2002, 469, 115-127.
40. Peterson, A. W.; Heaton, R. J.; Georgiadis, R. J. Am. Chem. Soc. 2000, 122, 7837-7838.
41. Gooding, J. J.; Erokhin, P.; Hibbert, D. B. Biosens. Bioelectron. 2000, 15, 229-239.
42. Hoogvliet, J. C.; Dijksma, M.; Kamp, B.; Bennekom, W. P. v. Anal. Chem. 2000, 72, 2016.
43. Wong, E. L. S.; Gooding, J. J. Anal. Chem., submitted.
44. Bard, A. J.; Faulkner, L. R. Electrochemical Methods: Fundamentals and Applications; Wiley: New York, 2001.
45. Wong, E. L. S.; Gooding, J. J. Aust. J. Chem. 2005, 58, 280-287.
46. Marcus, R. A.; Sutin, N. Biochim. Biophys. Acta 1985, 811, 265-322.
47. Finklea, H. O. In Electroanalytical Chemistry; Bard, A. J., Ed.; Dekker: New York, 1996; Vol. 19, pp 109-335.
48. Sauerbrey, G. Z. Phys. 1959, 155, 206.
49. Caruso, F.; Rodda, E.; Furlong, D. F.; Niikura, K.; Okahata, Y. Anal. Chem. 1997, 69, 2043.
50. Okahata, Y.; Ijiro, K.; Matsuzaki, Y. Langmuir 1993, 9, 19.
51. Satjapipat, M.; Sanedrin, R.; Zhou, F. M. Langmuir 2001, 17, 7637.
52. Peterlinz, K. A.; Georgiadis, R. Langmuir 1996, 12, 4731-4740.
53. Georgiadis, R.; Peterlinz, K. P.; Peterson, A. W. J. Am. Chem. Soc. 2000, 122, 3166-3173.
54. Note we have investigated this shoulder peak in detail to show that it is due to long-range electron transfer to AQDS intercalated into the DNA duplex. That study will be described in more detail elsewhere, but in short, the shoulder peak did not appear if the interface was exposed to noncomplementary DNA and its magnitude was sensitive to single base pair mismatches, which serves as strong evidence for long-range electron transfer.