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Volumn 406, Issue 1, 2010, Pages 34-40

Melting temperature of surface-tethered DNA

Author keywords

Fluorescence quenching; Gold nanoparticles; Melting temperature; Surface immobilized DNA

Indexed keywords

AMIDES; CURVE FITTING; DNA; FIBER OPTIC SENSORS; FLUORESCENCE; FLUORESCENCE QUENCHING; FLUOROPHORES; GOLD COATINGS; GOLD METALLURGY; MELTING POINT; METAL NANOPARTICLES; PROBES; QUENCHING; SUBSTRATES; THULIUM;

EID: 77955844648     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2010.06.049     Document Type: Article
Times cited : (17)

References (25)
  • 2
    • 25444450344 scopus 로고    scopus 로고
    • Thermodynamics of DNA hybridization on gold nanoparticles
    • Xu J., Craig S.L. Thermodynamics of DNA hybridization on gold nanoparticles. J. Am. Chem. Soc. 2005, 127:13227-13231.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 13227-13231
    • Xu, J.1    Craig, S.L.2
  • 3
    • 0030917801 scopus 로고    scopus 로고
    • Observation of hybridization and dehybridization of thiol-tethered DNA using two-color surface plasmon resonance spectroscopy
    • Peterlinz K.A., Georgiadis R.M., Herne T.M., Tarlov M.J. Observation of hybridization and dehybridization of thiol-tethered DNA using two-color surface plasmon resonance spectroscopy. J. Am. Chem. Soc. 1997, 119:3401-3402.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 3401-3402
    • Peterlinz, K.A.1    Georgiadis, R.M.2    Herne, T.M.3    Tarlov, M.J.4
  • 4
    • 0032696764 scopus 로고    scopus 로고
    • Considerations for the quantitative transduction of hybridization of immobilized DNA
    • Piunno P.A.E., Watterson J., Wust C.C., Krull U.J. Considerations for the quantitative transduction of hybridization of immobilized DNA. Anal. Chim. Acta 1999, 400:73-89.
    • (1999) Anal. Chim. Acta , vol.400 , pp. 73-89
    • Piunno, P.A.E.1    Watterson, J.2    Wust, C.C.3    Krull, U.J.4
  • 5
    • 0037615164 scopus 로고    scopus 로고
    • Real-time detection of nucleic acid interactions by total internal reflection fluorescence
    • Lehr H.P., Reimann M., Brandenburg A., Sulz G., Klapproth H. Real-time detection of nucleic acid interactions by total internal reflection fluorescence. Anal. Chem. 2003, 75:2414-2420.
    • (2003) Anal. Chem. , vol.75 , pp. 2414-2420
    • Lehr, H.P.1    Reimann, M.2    Brandenburg, A.3    Sulz, G.4    Klapproth, H.5
  • 6
    • 33645660631 scopus 로고    scopus 로고
    • Rapid melting curve analysis on monolayered beads for high-throughput genotyping of single-nucleotide polymorphisms
    • Russom A., Haasl S., Brookes A.J., Andersson H., Stemme G. Rapid melting curve analysis on monolayered beads for high-throughput genotyping of single-nucleotide polymorphisms. Anal. Chem. 2006, 78:2220-2225.
    • (2006) Anal. Chem. , vol.78 , pp. 2220-2225
    • Russom, A.1    Haasl, S.2    Brookes, A.J.3    Andersson, H.4    Stemme, G.5
  • 7
    • 1542513358 scopus 로고    scopus 로고
    • A microfluidic platform using molecular beacon-based temperature calibration for thermal dehybridisation of surface-bound DNA
    • Dodge A., Turcatti G., Lawrence I., de Rooij N.F., Verpoorte E. A microfluidic platform using molecular beacon-based temperature calibration for thermal dehybridisation of surface-bound DNA. Anal. Chem. 2004, 76:1778-1787.
    • (2004) Anal. Chem. , vol.76 , pp. 1778-1787
    • Dodge, A.1    Turcatti, G.2    Lawrence, I.3    de Rooij, N.F.4    Verpoorte, E.5
  • 8
    • 23944514975 scopus 로고    scopus 로고
    • Label-free characterization of oligonucleotide hybridization using reflectometric interference spectroscopy
    • Pröll F., Kumpf M., Gauglitz G., Möhrle B. Label-free characterization of oligonucleotide hybridization using reflectometric interference spectroscopy. Anal. Bioanal. Chem. 2005, 382:1889-1894.
    • (2005) Anal. Bioanal. Chem. , vol.382 , pp. 1889-1894
    • Pröll, F.1    Kumpf, M.2    Gauglitz, G.3    Möhrle, B.4
  • 9
    • 0030825711 scopus 로고    scopus 로고
    • Characterization of DNA probes immobilized on gold surfaces
    • Herne T.M., Tarlov M.J. Characterization of DNA probes immobilized on gold surfaces. J. Am. Chem. Soc. 1997, 119:8916-8920.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8916-8920
    • Herne, T.M.1    Tarlov, M.J.2
  • 10
    • 0035075442 scopus 로고    scopus 로고
    • Single-mismatch detection using gold-quenched fluorescent oligonucleotides
    • Dubertret B., Calame M., Libchaber A.J. Single-mismatch detection using gold-quenched fluorescent oligonucleotides. Nat. Biotechnol. 2001, 19:365-370.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 365-370
    • Dubertret, B.1    Calame, M.2    Libchaber, A.J.3
  • 11
    • 26844564939 scopus 로고    scopus 로고
    • Emission characteristics of fluorescent labels with respect to temperature changes and subsequent effects on DNA microchip studies
    • Liu W.-T., Wu J.-H., Li E.S.-Y., Selamat E.S. Emission characteristics of fluorescent labels with respect to temperature changes and subsequent effects on DNA microchip studies. Appl. Environ. Microbiol. 2005, 71:6453-6457.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 6453-6457
    • Liu, W.-T.1    Wu, J.-H.2    Li, E.S.-Y.3    Selamat, E.S.4
  • 12
    • 0000817598 scopus 로고    scopus 로고
    • Size and temperature dependence of the plasmon absorption of colloidal gold nanoparticles
    • Link S., El-Sayed M.A. Size and temperature dependence of the plasmon absorption of colloidal gold nanoparticles. J. Phys. Chem. B 1999, 103:4212-4217.
    • (1999) J. Phys. Chem. B , vol.103 , pp. 4212-4217
    • Link, S.1    El-Sayed, M.A.2
  • 13
    • 0030768397 scopus 로고    scopus 로고
    • Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles
    • Elghanian R., Storhoff J.J., Mucic R.C., Letsinger R.L., Mirkin C.A. Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. Science 1997, 277:1078-1081.
    • (1997) Science , vol.277 , pp. 1078-1081
    • Elghanian, R.1    Storhoff, J.J.2    Mucic, R.C.3    Letsinger, R.L.4    Mirkin, C.A.5
  • 14
    • 0033033430 scopus 로고    scopus 로고
    • Thermodynamic basis of the enhanced specificity of structured DNA probes
    • Bonnet G., Tyagi S., Libchaber A., Kramer F.R. Thermodynamic basis of the enhanced specificity of structured DNA probes. Proc. Natl. Acad. Sci. USA 1999, 96:6171-6176.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6171-6176
    • Bonnet, G.1    Tyagi, S.2    Libchaber, A.3    Kramer, F.R.4
  • 15
    • 1842455190 scopus 로고    scopus 로고
    • In silico analysis of complete bacterial genomes: PCR, AFLP-PCR, and endonuclease restriction
    • Bikandi J., San Millán R., Rementeria A., Garaizar J. In silico analysis of complete bacterial genomes: PCR, AFLP-PCR, and endonuclease restriction. Bioinformatics 2004, 20:798-799.
    • (2004) Bioinformatics , vol.20 , pp. 798-799
    • Bikandi, J.1    San Millán, R.2    Rementeria, A.3    Garaizar, J.4
  • 16
    • 0002635816 scopus 로고    scopus 로고
    • Conformational changes
    • University Science Books, Sausalito, CA, V.A. Bloomfield, D.M. Crothers, I. Tinoco (Eds.)
    • Turner D.H. Conformational changes. Nucleic Acids: Structure, Properties, and Functions 2000, 259-334. University Science Books, Sausalito, CA. V.A. Bloomfield, D.M. Crothers, I. Tinoco (Eds.).
    • (2000) Nucleic Acids: Structure, Properties, and Functions , pp. 259-334
    • Turner, D.H.1
  • 17
    • 50849142843 scopus 로고    scopus 로고
    • Electrical detection of the temperature induced melting transition of a DNA hairpin covalently attached to gold interdigitated microelectrodes
    • Brewood G.P., Rangineni Y., Fish D.J., Bhandiwad A.S., Evans D.R., Solanki R., Benight A.S. Electrical detection of the temperature induced melting transition of a DNA hairpin covalently attached to gold interdigitated microelectrodes. Nucleic Acids Res. 2008, 36:e98.
    • (2008) Nucleic Acids Res. , vol.36
    • Brewood, G.P.1    Rangineni, Y.2    Fish, D.J.3    Bhandiwad, A.S.4    Evans, D.R.5    Solanki, R.6    Benight, A.S.7
  • 18
    • 33748569797 scopus 로고    scopus 로고
    • Defects can increase the melting temperature of DNA-nanoparticle assemblies
    • Harris N.C., Kiang C.-H. Defects can increase the melting temperature of DNA-nanoparticle assemblies. J. Phys. Chem. B 2006, 110:16393-16396.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 16393-16396
    • Harris, N.C.1    Kiang, C.-H.2
  • 19
    • 43249095784 scopus 로고    scopus 로고
    • Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations
    • Owczarzy R., Moreira B.G., You Y., Behlke M.A., Walder J.A. Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations. Biochemistry 2008, 47:5336-5353.
    • (2008) Biochemistry , vol.47 , pp. 5336-5353
    • Owczarzy, R.1    Moreira, B.G.2    You, Y.3    Behlke, M.A.4    Walder, J.A.5
  • 20
    • 0000048995 scopus 로고
    • The secondary structures of nucleic acids in organic solvents
    • Helmkamp G.K., Ts'o P.O.P. The secondary structures of nucleic acids in organic solvents. J. Am. Chem. Soc. 1961, 83:138-142.
    • (1961) J. Am. Chem. Soc. , vol.83 , pp. 138-142
    • Helmkamp, G.K.1    Ts'o, P.O.P.2
  • 21
    • 0000085382 scopus 로고
    • The relationship of structure to the effectiveness of denaturing agents for deoxyribonucleic acid
    • Levine L., Gordon J.A., Jencks W.P. The relationship of structure to the effectiveness of denaturing agents for deoxyribonucleic acid. Biochemistry 1963, 2:168-175.
    • (1963) Biochemistry , vol.2 , pp. 168-175
    • Levine, L.1    Gordon, J.A.2    Jencks, W.P.3
  • 23
    • 0039054622 scopus 로고
    • Nonaqueous solutions of DNA: reversible and irreversible denaturation in methanol
    • Geiduschek E.P., Herskovits T.T. Nonaqueous solutions of DNA: reversible and irreversible denaturation in methanol. Arch. Biochem. Biophys. 1961, 95:114-129.
    • (1961) Arch. Biochem. Biophys. , vol.95 , pp. 114-129
    • Geiduschek, E.P.1    Herskovits, T.T.2
  • 24
    • 0001221509 scopus 로고
    • The effect of electrolytes on the stability of the deoxyribonucleate helix
    • Hamaguchi K., Geiduschek E.P. The effect of electrolytes on the stability of the deoxyribonucleate helix. J. Am. Chem. Soc. 1962, 84:1329-1338.
    • (1962) J. Am. Chem. Soc. , vol.84 , pp. 1329-1338
    • Hamaguchi, K.1    Geiduschek, E.P.2
  • 25
    • 0002752281 scopus 로고
    • Interaction of nucleosides and related compounds with nucleic acids as indicated by the change of helix-coil transition temperature
    • Ts'o P.O.P., Helmkamp G.K., Sander C. Interaction of nucleosides and related compounds with nucleic acids as indicated by the change of helix-coil transition temperature. Proc. Natl. Acad. Sci. USA 1962, 48:686-698.
    • (1962) Proc. Natl. Acad. Sci. USA , vol.48 , pp. 686-698
    • Ts'o, P.O.P.1    Helmkamp, G.K.2    Sander, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.