What controls the melting properties of DNA-linked gold nanoparticle assemblies?

Journal of the American Chemical Society

Volumn 125, Issue 6, 2003, Pages 1643-1654

  Jin, Rongchao ^a   Wu, Guosheng ^a   Li, Zhi ^a   Mirkin, Chad A ^a   Schatz, George C ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

OLIGONUCLEOTIDES;

GOLD; MELTING; MOLECULAR STRUCTURE; NANOSTRUCTURED MATERIALS;

DNA;

DNA; GOLD; NANOPARTICLE; OLIGONUCLEOTIDE; SODIUM CHLORIDE;

ARTICLE; ENVIRONMENTAL FACTOR; MELTING POINT; PHASE TRANSITION; STRUCTURE ANALYSIS; SURFACE PROPERTY; THEORETICAL MODEL; THERMODYNAMICS;

CHEMISTRY, PHYSICAL; DNA; DNA ADDUCTS; GOLD; MODELS, CHEMICAL; MODELS, MOLECULAR; NANOTECHNOLOGY; OLIGONUCLEOTIDE PROBES; PARTICLE SIZE; SODIUM CHLORIDE; THERMODYNAMICS;

EID: 0037433244     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja021096v     Document Type: Article

References (61)

1. Mirkin, C. A.; Letsinger, R. L.; Mucic, R. C.; Storhoff, J. J. Nature 1996, 382, 607.
2. Alivisatos, A. P.; Johnsson, K. P.; Peng, X.; Wilson, T. E.; Loweth, C. J.; Bruchez, M. P.; Schultz, P. G. Nature 1996, 382, 609.
3. Mucic, R. C.; Storhoff, J. J.; Mirkin, C. A.; Letsinger, R. L. J. Am. Chem. Soc. 1998, 120, 12674.
4. Winfree, E.; Liu, F.; Wenzler, L. A.; Seeman, N. C. Nature 1998, 394, 539.
5. Mann, S.; Shenton, W.; Li, M.; Connolly, S.; Fitzmaurice, D. Adv. Mater. 2000, 12, 147.
6. Elghanian, R.; Storhoff, J. J.; Mucic, R. C.; Letsinger, R. L.; Mirkin, C. A. Science 1997, 277, 1078.
7. Taylor, J. R.; Fang, M. M.; Nie, S. Anal. Chem. 2000, 72, 1979.
8. Cui, Y.; Wei, Q.; Park, H.; Lieber, C. M. Science 2001, 293, 1289.
9. Nicewarner-Peñña, S. R.; Freeman, R. G.; Reiss, B. D.; He, L.; Peñña, D. J.; Walton, I. D.; Cromer, R.; Keating, C. D.; Natan, M. J. Science 2001, 294, 137.
10. Storhoff, J. J.; Elghanian, R.; Mucic, R. C.; Mirkin, C. A.; Letsinger, R. L. J. Am. Chem. Soc. 1998, 120, 1959.
11. Taton, T. A.; Mucic, R. C.; Mirkin, C. A.; Letsinger, R. L. J. Am. Chem. Soc. 2000, 122, 6305.
12. Niemeyer, C. M.; Ceyhan, B.; Gao, S.; Chi, L.; Peschel, S.; Simon, U. Colloid Polym. Sci. 2001, 279, 68.
13. Shipway, A. N.; Willner, I. Chem. Commun. 2001, 2035.
14. He, L.; Musick, M. D.; Nicewarner, S. R.; Salinas, F. G.; Benkovic, S. J.; Natan, M. J.; Keating, C. D. J. Am. Chem. Soc. 2000, 122, 9071.
15. Reichert, J.; Csaki, A.; Kohler, J. M.; Fritzsche, W. Anal. Chem. 2000, 72, 6025.
16. Souza, G. R.; Miller, J. H. J. Am. Chem. Soc. 2001, 123, 6734.
17. Dujardin, E.; Hsin, L. B.; Wang, C. R. C.; Mann, S. Chem. Commun. 2001, 1264.
18. Lin, L.; Zhao, H. Q.; Li, J. R.; Tang, J. A.; Duan, M. X.; Jiang, L. Biochem. Biophys. Res. Commun. 2000, 274, 817-820.
19. Authier, L.; Grossiord, C.; Brossier, P. Anal. Chem. 2001, 73, 4450.
20. Patolsky, F.; Ranjit, K. T.; Lichtenstein, A.; Willner, I. Chem. Commun. 2000, 1025.
21. Han, S.; Lin, J.; Satjapipat, M.; Baca, A. J.; Zhou, F. Chem. Commun. 2001, 609.
22. Zhou, X. C.; O'Shea, S. J.; Li, S. F. Chem. Commun. 2000, 953.
23. Wang, J.; Polsky, R.; Xu, D. Langmuir 2001, 17, 5739.
24. Cai, H.; Xu, C.; He, P. G.; Fang, Y. Z. J. Electroanal. Chem. 2001, 510, 78.
25. Limoges, B. Anal. Chem. 2001, 73, 4450.
26. Dubertret, B.; Calame, M.; Libchaber, A. J. Nat. Biotechnol. 2001, 19, 365.
27. Letsinger, R. L.; Mirkin, C. A.; Elghanian, R.; Mucic, R. C.; Storhoff, J. J. Phosphorus Sulfur 1999, 146, 359.
28. Reynolds, R. A.; Mirkin, C. A.; Letsinger, R. L. Pure Appl. Chem. 2000, 72, 229.
29. Cao, Y.-W.; Jin, R.; Mirkin, C. A. J. Am. Chem. Soc. 2001, 123, 7961.
30. Tinoco, I., Jr. J. Am. Chem. Soc. 1960, 82, 4785.
31. Taton, T. A.; Lu, G.; Mirkin, C. A. J. Am. Chem. Soc. 2001, 123, 5164.
32. Jin, R.; Cao, Y.; Mirkin, C. A.; Kelly, K. L.; Schatz, G. C.; Zheng, J. G. Science 2001, 294, 1901.
33. Demers, L. M.; Mirkin, C. A.; Mucic, R. C.; Reynolds, R. A.; Letsinger, R. L.; Elghanian, R.; Viswanadham, G. Anal. Chem. 2000, 72, 5535.
34. The oligonucleotide surface coverage on the nanoparticle was determined to be ∼90,. 160, and 250 single strands per 13, 31, and 50 nm diameter Au particles, respectively.
35. Shchepinov, M. S.; Mir, K. U.; Elder, J. K.; Frank-Kamenetskii, M. D.; Southern, E. M. Nucleic Acids Res. 1999, 27, 3035.
36. Long, H.; Schatz, G. C. Mat. Res. Soc. Proc. 2002, 735. C01.
37. Storhoff, J. J.; Lazarides, A. A.; Mucic, R. C.; Mirkin, C. A.; Letsinger, R. L.; Schatz, G. C. J. Am. Chem. Soc. 2000, 122, 4640.
38. Park, S.-J.; Taton, T. A.; Mirkin, C. A. Science 2002, 295, 1503.
39. Voet, D.; Gratzer, W. B.; Cox, R. A.; Doty, P. Biopolymer 1963, 1, 205.
40. (a) Porschke, D. Biopolymers 1971, 10, 1989.
41. (b) Crothers, D. M. Biopolymers 1968, 6, 1391.
42. Li, Z.; Jin, R.; Mirkin, C. A.; Letsinger, R. L. Nucleic Acids Res. 2002, 30, 1558.
43. (a) Sprecher, C. A.; Johnson, W. C., Jr. Biopolymers 1982, 21, 321.
44. (b) Davis, T. M.; McFail-Isom, L.; Keane, E.; Williams, L. D. Biochemistry 1998, 37, 6975.
45. Marky, L. A.; Breslauer, K. J. Biopolymers 1987, 26, 1601.
46. Breslauer, K. J. Methods Enzymol. 1995, 259, 221.
47. Marky, L. A.; Kallenbach, N. R.; McDonough, K. A.; Seeman, N. C.; Breslauer, K. J. Biopolymers 1987, 26, 1621.
48. (a) Jin, R.; Breslauer, K. J.; Jones, R. A.; Gaffney, B. L. Science 1990, 250, 543.
49. (b) Jin, R.; Gaffney, B. L.; Wang, C.; Jones, R. A.; Breslauer, K. J. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 8832.
50. Particles linked directly through surface bound DNA, the two-strand system, still show cooperative melting, as the counterions are still released when melting occurs (as the fraction of condensed counterions is lower in single-stranded DNA than it is in double-stranded DNA)
51. (a) SantaLucia, J., Jr. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 1460.
52. (b) Peyret, N.; Seneviratne, P. A.; Allawi, H. T.; SantaLucia, J., Jr.; Biochemistry 1999, 38, 3468.
53. Anderson, C. F.; Record, M. T., Jr. Annu. Rev. Phys. Chem. 1982, 33, 191.
54. Olmsted, M. C.; Anderson, C. F.; Record, M. T., Jr. Biopolymers 1991, 31, 1593.
55. Bond, J. P.; Anderson, C. F.; Record, M. T., Jr. Biophys. J. 1994, 67, 825.
56. Holbrook, J. A.; Capp, M. W.; Saecker, R. M.; Record, M. T., Jr. Biochemistry 1999, 38, 8409.
57. Mitchell, G. P.; Mirkin, C. A.; Letsinger, R. L. J. Am. Chem. Soc. 1999, 121, 8122.
58. Li, Z.; Mirkin, C. A., unpublished work.
59. http://basic.nwu.edu.
60. Freeman, R. G.; Hommer, M. B.; Grabar, K. C.; Jackson, M. A.; Natan, M. J. J. Phys. Chem. 1996, 100, 718.
61. Chrisey, L. A.; Lee, G. U.; O'Ferrall, C. E. Nucleic Acids Res. 1996, 24, 3031.