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Volumn 105, Issue 14, 2008, Pages 5301-5306

DNA surface hybridization regimes

Author keywords

Biosensor; Ferrocene; Ionic strength; Microarray; Probe coverage

Indexed keywords

DNA; OLIGONUCLEOTIDE;

EID: 44449137882     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0709416105     Document Type: Article
Times cited : (211)

References (47)
  • 1
    • 0032771580 scopus 로고    scopus 로고
    • Powerful tools for genetic analysis come of age
    • Graves DJ (1999) Powerful tools for genetic analysis come of age. Trends Biotechnol 17:127-134.
    • (1999) Trends Biotechnol , vol.17 , pp. 127-134
    • Graves, D.J.1
  • 2
    • 0031800106 scopus 로고    scopus 로고
    • Microarrays: Biotechnology's discovery platform for functional genomics
    • Schena M, et al. (1998) Microarrays: Biotechnology's discovery platform for functional genomics. Trends Biotechnol 16:301-306.
    • (1998) Trends Biotechnol , vol.16 , pp. 301-306
    • Schena, M.1
  • 3
    • 31444431754 scopus 로고    scopus 로고
    • Reliability and reproducibility issues in DNA microarray measurements
    • Draghici S, Khatri P, Eklund AC, Szallasi Z (2006) Reliability and reproducibility issues in DNA microarray measurements. Trends Genet 22:101-109.
    • (2006) Trends Genet , vol.22 , pp. 101-109
    • Draghici, S.1    Khatri, P.2    Eklund, A.C.3    Szallasi, Z.4
  • 4
    • 18244389201 scopus 로고    scopus 로고
    • Standardizing global gene expression analysis between laboratories and across platforms
    • Bammler T, et al. (2005) Standardizing global gene expression analysis between laboratories and across platforms. Nat Methods 2:1- 6.
    • (2005) Nat Methods , vol.2 , pp. 1-6
    • Bammler, T.1
  • 5
    • 13944271437 scopus 로고    scopus 로고
    • Physicochemical perspectives on DNA microarray and biosensor technologies
    • Levicky R, Horgan A (2005) Physicochemical perspectives on DNA microarray and biosensor technologies. Trends Biotechnol 23:143-149.
    • (2005) Trends Biotechnol , vol.23 , pp. 143-149
    • Levicky, R.1    Horgan, A.2
  • 6
    • 33646182577 scopus 로고    scopus 로고
    • Thermodynamics of competitive surface adsorption on DNA microarrays
    • Binder H (2006) Thermodynamics of competitive surface adsorption on DNA microarrays. J Phys Condens Matter 18:S491-S523.
    • (2006) J Phys Condens Matter , vol.18
    • Binder, H.1
  • 7
    • 33646172937 scopus 로고    scopus 로고
    • On the hybridization isotherms of DNA microarrays: The Langmuir model and its extensions
    • Halperin A, Buhot A, Zhulina EB (2006) On the hybridization isotherms of DNA microarrays: The Langmuir model and its extensions. J Phys Condens Matter 18:S463-S490.
    • (2006) J Phys Condens Matter , vol.18
    • Halperin, A.1    Buhot, A.2    Zhulina, E.B.3
  • 8
    • 33745787067 scopus 로고    scopus 로고
    • Adsorption models of hybridization and post-hybridization behaviour on oligonucleotide microarrays
    • Burden CJ, Pittelkow Y, Wilson SR (2006) Adsorption models of hybridization and post-hybridization behaviour on oligonucleotide microarrays. J Phys Condens Matter 18:5545-5565.
    • (2006) J Phys Condens Matter , vol.18 , pp. 5545-5565
    • Burden, C.J.1    Pittelkow, Y.2    Wilson, S.R.3
  • 9
    • 34347249220 scopus 로고    scopus 로고
    • Array feature size influences nucleic acid surface capture in DNA microarrays
    • Dandy DS, Wu P, Grainger DW (2007) Array feature size influences nucleic acid surface capture in DNA microarrays. Proc Natl Acad Sci USA 104:8223-8228.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 8223-8228
    • Dandy, D.S.1    Wu, P.2    Grainger, D.W.3
  • 10
    • 33750009863 scopus 로고    scopus 로고
    • Kinetics of oligonucleotide hybridization to photolithographically patterned DNA arrays
    • Glazer M, et al. (2006) Kinetics of oligonucleotide hybridization to photolithographically patterned DNA arrays. Anal Biochem 358:225-238.
    • (2006) Anal Biochem , vol.358 , pp. 225-238
    • Glazer, M.1
  • 11
    • 33846794503 scopus 로고    scopus 로고
    • Temperature effects on DNA chip experiments from surface plasmon resonance imaging: Isotherms and melting curves
    • Fiche JB, Buhot A, Calemczuk R, Livache T (2007) Temperature effects on DNA chip experiments from surface plasmon resonance imaging: Isotherms and melting curves. Biophys J 92:935-946.
    • (2007) Biophys J , vol.92 , pp. 935-946
    • Fiche, J.B.1    Buhot, A.2    Calemczuk, R.3    Livache, T.4
  • 13
    • 22144466500 scopus 로고    scopus 로고
    • Surface density dependence of PCR amplicon hybridization on PNA/DNA probe layers
    • Yao DF, et al. (2005) Surface density dependence of PCR amplicon hybridization on PNA/DNA probe layers. Biophys J 88:2745-2751.
    • (2005) Biophys J , vol.88 , pp. 2745-2751
    • Yao, D.F.1
  • 14
    • 0033731342 scopus 로고    scopus 로고
    • Effects of oligonucleotide immobilization density on selectivity of quantitative transduction of hybridization of immobilized DNA
    • Watterson JH, Piunno PAE, Wust CC, Krull UJ (2000) Effects of oligonucleotide immobilization density on selectivity of quantitative transduction of hybridization of immobilized DNA. Langmuir 16:4984-4992.
    • (2000) Langmuir , vol.16 , pp. 4984-4992
    • Watterson, J.H.1    Piunno, P.A.E.2    Wust, C.C.3    Krull, U.J.4
  • 15
    • 0030862620 scopus 로고    scopus 로고
    • Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays
    • Shchepinov MS, CaseGreen SC, Southern EM (1997) Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res 25:1155-1161.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1155-1161
    • Shchepinov, M.S.1    CaseGreen, S.C.2    Southern, E.M.3
  • 16
    • 23144442980 scopus 로고    scopus 로고
    • DNA recognition interfaces: The influence of interfacial design on the efficiency and kinetics of hybridization
    • Wong ELS, Chow E, Gooding JJ (2005) DNA recognition interfaces: The influence of interfacial design on the efficiency and kinetics of hybridization. Langmuir 21:6957-6965.
    • (2005) Langmuir , vol.21 , pp. 6957-6965
    • Wong, E.L.S.1    Chow, E.2    Gooding, J.J.3
  • 17
  • 18
    • 0037065343 scopus 로고    scopus 로고
    • Hybridization of mismatched or partially matched DNA at surfaces
    • Peterson AW, Wolf LK, Georgiadis RM (2002) Hybridization of mismatched or partially matched DNA at surfaces. J Am Chem Soc 124:14601-14607.
    • (2002) J Am Chem Soc , vol.124 , pp. 14601-14607
    • Peterson, A.W.1    Wolf, L.K.2    Georgiadis, R.M.3
  • 19
    • 33645691508 scopus 로고    scopus 로고
    • Multi-technique comparison of immobilized and hybridized oligonucleotide surface density on commercial amine-reactive microarrays slides
    • Gong P, Harbers GM, Grainger DW (2006) Multi-technique comparison of immobilized and hybridized oligonucleotide surface density on commercial amine-reactive microarrays slides. Anal Chem 78:2342-2351.
    • (2006) Anal Chem , vol.78 , pp. 2342-2351
    • Gong, P.1    Harbers, G.M.2    Grainger, D.W.3
  • 21
    • 0032581927 scopus 로고    scopus 로고
    • Using self-assembly to control the structure of DNA monolayers on gold: A neutron reflectivity study
    • Levicky R, Herne TM, Tarlov MJ, Satija SK (1998) Using self-assembly to control the structure of DNA monolayers on gold: A neutron reflectivity study. J Am Chem Soc 120:9787-9792.
    • (1998) J Am Chem Soc , vol.120 , pp. 9787-9792
    • Levicky, R.1    Herne, T.M.2    Tarlov, M.J.3    Satija, S.K.4
  • 22
    • 11344295416 scopus 로고    scopus 로고
    • X-ray photoelectron spectroscopy and infrared spectroscopy study of maleimide-activated supports for immobilization of oligodeoxyribonucleotides
    • Shen G, Anand MFG, Levicky R (2004) X-ray photoelectron spectroscopy and infrared spectroscopy study of maleimide-activated supports for immobilization of oligodeoxyribonucleotides. Nucleic Acids Res 32:5973-5980.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5973-5980
    • Shen, G.1    Anand, M.F.G.2    Levicky, R.3
  • 23
    • 0032533559 scopus 로고    scopus 로고
    • Electrochemical quantitation of DNA immobilized on gold
    • Steel AB, Herne TM, Tarlov MJ (1998) Electrochemical quantitation of DNA immobilized on gold. Anal Chem 70:4670-4677.
    • (1998) Anal Chem , vol.70 , pp. 4670-4677
    • Steel, A.B.1    Herne, T.M.2    Tarlov, M.J.3
  • 24
    • 0348195767 scopus 로고    scopus 로고
    • Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays
    • Forman JE, Walton ID, Stern D, Rava RP, Trulson MO (1998) Thermodynamics of duplex formation and mismatch discrimination on photolithographically synthesized oligonucleotide arrays. ACS Symp Ser 682:206-228.
    • (1998) ACS Symp Ser , vol.682 , pp. 206-228
    • Forman, J.E.1    Walton, I.D.2    Stern, D.3    Rava, R.P.4    Trulson, M.O.5
  • 25
    • 0343851534 scopus 로고    scopus 로고
    • Real-time measurements of DNA hybridization on microparticles with fluorescence resonance energy transfer
    • Henry MR, Stevens PW, Sun J, Kelso DM (1999) Real-time measurements of DNA hybridization on microparticles with fluorescence resonance energy transfer. Anal Biochem 276:204-214.
    • (1999) Anal Biochem , vol.276 , pp. 204-214
    • Henry, M.R.1    Stevens, P.W.2    Sun, J.3    Kelso, D.M.4
  • 26
    • 0035163623 scopus 로고    scopus 로고
    • Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays
    • Nelson BP, Grimsrud TE, Liles MR, Goodman RM, Corn RM (2001) Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. Anal Chem 73:1-7.
    • (2001) Anal Chem , vol.73 , pp. 1-7
    • Nelson, B.P.1    Grimsrud, T.E.2    Liles, M.R.3    Goodman, R.M.4    Corn, R.M.5
  • 27
    • 1542606746 scopus 로고    scopus 로고
    • Kinetic measurements of DNA hybridisation on an oligonucleotide-immobilized 27-MHz quartz crystal microbalance
    • Okahata Y, et al. (1998) Kinetic measurements of DNA hybridisation on an oligonucleotide-immobilized 27-MHz quartz crystal microbalance. Anal Chem 70:1288-1296.
    • (1998) Anal Chem , vol.70 , pp. 1288-1296
    • Okahata, Y.1
  • 28
    • 0030825711 scopus 로고    scopus 로고
    • Characterization of DNA probes immobilized on gold surfaces
    • Herne TM, Tarlov MJ (1997) Characterization of DNA probes immobilized on gold surfaces. J Am Chem Soc 119:8916-8920.
    • (1997) J Am Chem Soc , vol.119 , pp. 8916-8920
    • Herne, T.M.1    Tarlov, M.J.2
  • 29
    • 0030597973 scopus 로고    scopus 로고
    • N-(2-ferrocene-ethyl) maleimide: A new electro-active sulphydryl-specific reagent for cysteine-containing peptides and proteins
    • Gleria KD, Hill HAO, Wong LL (1996) N-(2-ferrocene-ethyl) maleimide: A new electro-active sulphydryl-specific reagent for cysteine-containing peptides and proteins. FEBS Lett 390:142-144.
    • (1996) FEBS Lett , vol.390 , pp. 142-144
    • Gleria, K.D.1    Hill, H.A.O.2    Wong, L.L.3
  • 30
    • 0028485937 scopus 로고
    • Diagram of states of a grafted polyelectrolyte layer
    • Borisov OV, Zhulina EB, Birshtein TM (1994) Diagram of states of a grafted polyelectrolyte layer. Macromolecules 27:4795-4803.
    • (1994) Macromolecules , vol.27 , pp. 4795-4803
    • Borisov, O.V.1    Zhulina, E.B.2    Birshtein, T.M.3
  • 31
    • 33747202410 scopus 로고    scopus 로고
    • Strongly charged polymer brushes
    • O'Shaughnessy B, Yang Q (2006) Strongly charged polymer brushes. Europhys Lett 75:427-433.
    • (2006) Europhys Lett , vol.75 , pp. 427-433
    • O'Shaughnessy, B.1    Yang, Q.2
  • 32
    • 1142298544 scopus 로고    scopus 로고
    • Sensitivity, specificity, and the hybridization isotherms of DNA chips
    • Halperin A, Buhot A, Zhulina EB (2004) Sensitivity, specificity, and the hybridization isotherms of DNA chips. Biophys J 86:718-730.
    • (2004) Biophys J , vol.86 , pp. 718-730
    • Halperin, A.1    Buhot, A.2    Zhulina, E.B.3
  • 33
    • 0037388263 scopus 로고    scopus 로고
    • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
    • Hekstra D, Taussig AR, Magnasco M, Naef F (2003) Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. Nucleic Acids Res. 31:1962-1968.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1962-1968
    • Hekstra, D.1    Taussig, A.R.2    Magnasco, M.3    Naef, F.4
  • 34
    • 0037934649 scopus 로고    scopus 로고
    • Modeling of DNA microarray data by using physical properties of hybridization
    • Held GA, Grinstein G, Tu Y (2003) Modeling of DNA microarray data by using physical properties of hybridization. Proc Natl Acad Sci USA 100:7575-7580.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 7575-7580
    • Held, G.A.1    Grinstein, G.2    Tu, Y.3
  • 35
    • 85036155972 scopus 로고    scopus 로고
    • Coulomb blockage of hybridization in two-dimensional DNA arrays
    • Vainrub A, Pettitt BM (2002) Coulomb blockage of hybridization in two-dimensional DNA arrays. Phys Rev E 66:041905.
    • (2002) Phys Rev E , vol.66 , pp. 041905
    • Vainrub, A.1    Pettitt, B.M.2
  • 36
    • 0037527767 scopus 로고    scopus 로고
    • Sensitive quantitative nucleic acid detection using oligonucleotide microarrays
    • Vainrub A, Pettitt BM (2003) Sensitive quantitative nucleic acid detection using oligonucleotide microarrays. J Am Chem Soc 125:7798-7799.
    • (2003) J Am Chem Soc , vol.125 , pp. 7798-7799
    • Vainrub, A.1    Pettitt, B.M.2
  • 37
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia J, Jr (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 95:1460-1465.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 1460-1465
    • SantaLucia Jr, J.1
  • 38
    • 0015274187 scopus 로고
    • Application of polyelectrolyte limiting laws to helix-coil transition of DNA .1. Excess univalent cations
    • Manning GS (1972) Application of polyelectrolyte limiting laws to helix-coil transition of DNA .1. Excess univalent cations. Biopolymers 11:937-949.
    • (1972) Biopolymers , vol.11 , pp. 937-949
    • Manning, G.S.1
  • 39
    • 0017873611 scopus 로고
    • A semiempirical extension of polyelectrolyte theory to the treatment of oligoelectrolytes: Application to oligonucleotide helix-coil transitions
    • Record MT, Lohman TM (1978) A semiempirical extension of polyelectrolyte theory to the treatment of oligoelectrolytes: Application to oligonucleotide helix-coil transitions. Biopolymers 17:159-166.
    • (1978) Biopolymers , vol.17 , pp. 159-166
    • Record, M.T.1    Lohman, T.M.2
  • 41
    • 23244444650 scopus 로고    scopus 로고
    • Brush effects on DNA chips: Thermodynamics, kinetics and design guidelines
    • Halperin A, Buhot A, Zhulina EB (2005) Brush effects on DNA chips: Thermodynamics, kinetics and design guidelines. Biophys J 89:796-811.
    • (2005) Biophys J , vol.89 , pp. 796-811
    • Halperin, A.1    Buhot, A.2    Zhulina, E.B.3
  • 42
    • 0020813840 scopus 로고
    • Electrochemical study of gold electrodes with anodic oxide films: I. Formation and reduction behavior of anodic oxides on gold
    • Oesch U, Janata J (1983) Electrochemical study of gold electrodes with anodic oxide films: I. Formation and reduction behavior of anodic oxides on gold. Electrochim Acta 28:1237-1246.
    • (1983) Electrochim Acta , vol.28 , pp. 1237-1246
    • Oesch, U.1    Janata, J.2
  • 43
    • 33745728244 scopus 로고    scopus 로고
    • Charging behavior of single-stranded DNA polyelectrolyte brushes
    • Shen G, et al. (2006) Charging behavior of single-stranded DNA polyelectrolyte brushes. J Am Chem Soc 128:8427-8433.
    • (2006) J Am Chem Soc , vol.128 , pp. 8427-8433
    • Shen, G.1
  • 44
    • 0041561078 scopus 로고    scopus 로고
    • Voltammetric procedure for examining DNA-modified surfaces: Quantitation, cationic binding activity, and electron-transfer kinetics
    • Yu H-Z, Luo C-Y, Sankar CG, Sen D (2003) Voltammetric procedure for examining DNA-modified surfaces: Quantitation, cationic binding activity, and electron-transfer kinetics. Anal Chem 75:3902-3907.
    • (2003) Anal Chem , vol.75 , pp. 3902-3907
    • Yu, H.-Z.1    Luo, C.-Y.2    Sankar, C.G.3    Sen, D.4
  • 45
    • 0019622512 scopus 로고
    • Empirical atomic sensitivity factors for quantitative analysis by electron spectroscopy for chemical analysis
    • Wagner CD, et al. (1981) Empirical atomic sensitivity factors for quantitative analysis by electron spectroscopy for chemical analysis. Surf Interface Anal 3:211-225.
    • (1981) Surf Interface Anal , vol.3 , pp. 211-225
    • Wagner, C.D.1
  • 47
    • 0942266527 scopus 로고    scopus 로고
    • Quantitative characterization of DNA films by X-ray photoelectron spectroscopy
    • Petrovykh DY, Kimura-Suda H, Tarlov MJ, Whitman LJ (2004) Quantitative characterization of DNA films by X-ray photoelectron spectroscopy. Langmuir 20:429-440.
    • (2004) Langmuir , vol.20 , pp. 429-440
    • Petrovykh, D.Y.1    Kimura-Suda, H.2    Tarlov, M.J.3    Whitman, L.J.4


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