-
1
-
-
0003880161
-
-
Garland Publishing, Inc.
-
B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J.D. Watson Molecular biology of the cell 1994 Garland Publishing, Inc.
-
(1994)
Molecular Biology of the Cell
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.D.6
-
2
-
-
0004150063
-
-
Cambridge University Press Cambridge, UK
-
D. Boal Mechanics of the cell 2002 Cambridge University Press Cambridge, UK
-
(2002)
Mechanics of the Cell
-
-
Boal, D.1
-
3
-
-
33749125215
-
Biophysical properties of lipids and dynamic membranes
-
P.A. Janmey, and P.K.J. Kinnunen Biophysical properties of lipids and dynamic membranes Trends Cell Biol 16 2006 538 546
-
(2006)
Trends Cell Biol
, vol.16
, pp. 538-546
-
-
Janmey, P.A.1
Kinnunen, P.K.J.2
-
5
-
-
28444476999
-
Membrane curvature and mechanisms of dynamic cell membrane remodeling
-
H.T. McMahon, and J.L. Gallop Membrane curvature and mechanisms of dynamic cell membrane remodeling Nature 438 2005 590 596
-
(2005)
Nature
, vol.438
, pp. 590-596
-
-
McMahon, H.T.1
Gallop, J.L.2
-
6
-
-
33644846421
-
How proteins produce cellular membrane curvature
-
J. Zimmerberg, and M.M. Kozlov How proteins produce cellular membrane curvature Nat Rev Mol Cell Biol 7 2006 9 19
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 9-19
-
-
Zimmerberg, J.1
Kozlov, M.M.2
-
7
-
-
48249134102
-
Mediation, modulation, and consequences of membrane-cytoskeleton interactions
-
G.J. Doherty, and H.T. McMahon Mediation, modulation, and consequences of membrane-cytoskeleton interactions Annu Rev Biochem 37 2008 65 95
-
(2008)
Annu Rev Biochem
, vol.37
, pp. 65-95
-
-
Doherty, G.J.1
McMahon, H.T.2
-
9
-
-
77955052751
-
Interplay of proteins and lipids in generating membrane curvature
-
T.R. Graham, and M.M. Kozlov Interplay of proteins and lipids in generating membrane curvature Curr Opin Cell Biol 22 2010 430 436
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 430-436
-
-
Graham, T.R.1
Kozlov, M.M.2
-
10
-
-
64249110493
-
The BAR domain superfamily: Membrane molding macromolecules
-
A. Frost, V.M. Unger, and P. De Camilli The BAR domain superfamily: membrane molding macromolecules Cell 137 2009 191 196
-
(2009)
Cell
, vol.137
, pp. 191-196
-
-
Frost, A.1
Unger, V.M.2
De Camilli, P.3
-
11
-
-
0037179662
-
Curvature of clathrin-coated pits driven by epsin
-
M.G. Ford, I.G. Mills, B.J. Peter, Y. Vallis, G.J. Praefcke, and P.R. Evans Curvature of clathrin-coated pits driven by epsin Nature 419 2002 361 366
-
(2002)
Nature
, vol.419
, pp. 361-366
-
-
Ford, M.G.1
Mills, I.G.2
Peter, B.J.3
Vallis, Y.4
Praefcke, G.J.5
Evans, P.R.6
-
12
-
-
0346756190
-
Lipid packing sensed by ArfGAP1 couples COPI coat disassembly to membrane bilayer curvature
-
J. Bigay, P. Gounon, S. Robineau, and B. Antonny Lipid packing sensed by ArfGAP1 couples COPI coat disassembly to membrane bilayer curvature Nature 426 2003 563 566
-
(2003)
Nature
, vol.426
, pp. 563-566
-
-
Bigay, J.1
Gounon, P.2
Robineau, S.3
Antonny, B.4
-
13
-
-
79957473559
-
ARF family G proteins and their regulators: Roles in membrane transport, development and disease
-
J.G. Donaldson, and C.L. Jackson ARF family G proteins and their regulators: roles in membrane transport, development and disease Nat Rev Mol Cell Biol 12 2011 362 375
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 362-375
-
-
Donaldson, J.G.1
Jackson, C.L.2
-
14
-
-
46449093538
-
How does synaptotagmin trigger neurotransmitter release?
-
E.R. Chapman How does synaptotagmin trigger neurotransmitter release? Annu Rev Biochem 77 2008 615 641
-
(2008)
Annu Rev Biochem
, vol.77
, pp. 615-641
-
-
Chapman, E.R.1
-
15
-
-
84869040414
-
Curvature, lipid packing, and electrostatics of membrane organelles: Defining cellular territories in determining specificity
-
J. Bigay, and B. Antonny Curvature, lipid packing, and electrostatics of membrane organelles: defining cellular territories in determining specificity Dev Cell 23 2012 886 895
-
(2012)
Dev Cell
, vol.23
, pp. 886-895
-
-
Bigay, J.1
Antonny, B.2
-
16
-
-
46449135255
-
The hydrophobic insertion mechanism of membrane curvature generation by proteins
-
F. Campelo, H.T. McMahon, and M.M. Kozlov The hydrophobic insertion mechanism of membrane curvature generation by proteins Biophys J 95 2008 2325 2339
-
(2008)
Biophys J
, vol.95
, pp. 2325-2339
-
-
Campelo, F.1
McMahon, H.T.2
Kozlov, M.M.3
-
17
-
-
28444477387
-
Plasma membrane phosphoinositide organization by protein electrostatics
-
S. McLaughlin, and D. Murray Plasma membrane phosphoinositide organization by protein electrostatics Nature 438 2005 605 611
-
(2005)
Nature
, vol.438
, pp. 605-611
-
-
McLaughlin, S.1
Murray, D.2
-
18
-
-
58349120603
-
Molecular mechanisms of membrane deformation by I-BAR domain proteins
-
J. Saarikangas, H.X. Zhao, A. Pykalainen, P. Laurinmaki, P.K. Mattila, and P.K.J. Kinnunen Molecular mechanisms of membrane deformation by I-BAR domain proteins Curr Biol 19 2009 95 107
-
(2009)
Curr Biol
, vol.19
, pp. 95-107
-
-
Saarikangas, J.1
Zhao, H.X.2
Pykalainen, A.3
Laurinmaki, P.4
Mattila, P.K.5
Kinnunen, P.K.J.6
-
19
-
-
77950596030
-
A unifying mechanism accounts for sensing of membrane curvature by BAR domains, amphipathic helices and membrane-anchored proteins
-
V.K. Bhatia, N.S. Hatzakis, and D. Stamou A unifying mechanism accounts for sensing of membrane curvature by BAR domains, amphipathic helices and membrane-anchored proteins Semin Cell Dev Biol 21 2010 381 390
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 381-390
-
-
Bhatia, V.K.1
Hatzakis, N.S.2
Stamou, D.3
-
20
-
-
70350011898
-
Modeling membrane deformations and lipid demixing upon protein-membrane interaction: The BAR dimer adsorption
-
G. Khelashvili, D. Harries, and H. Weinstein Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption Biophys J 97 2009 1626 1635
-
(2009)
Biophys J
, vol.97
, pp. 1626-1635
-
-
Khelashvili, G.1
Harries, D.2
Weinstein, H.3
-
21
-
-
79960149724
-
Synaptotagmin 1 modulates lipid acyl chain order in lipid bilayers by demixing phosphosphatidylserine
-
A.L. Lai, L.K. Tamm, J.F. Ellena, and D.S. Cafiso Synaptotagmin 1 modulates lipid acyl chain order in lipid bilayers by demixing phosphosphatidylserine J Biol Chem 286 2011 25291 25300
-
(2011)
J Biol Chem
, vol.286
, pp. 25291-25300
-
-
Lai, A.L.1
Tamm, L.K.2
Ellena, J.F.3
Cafiso, D.S.4
-
22
-
-
1842483252
-
Membrane curvature: How bar domains bend bilayers
-
J. Zimmerberg, and S. McLaughlin Membrane curvature: how bar domains bend bilayers Curr Biol 14 2004 R250 R252
-
(2004)
Curr Biol
, vol.14
-
-
Zimmerberg, J.1
McLaughlin, S.2
-
23
-
-
33745559393
-
Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms
-
M. Masuda, S. Takeda, M. Sone, T. Ohki, H. Mori, and Y. Kamioka Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms EMBO J 25 2006 2889 2897
-
(2006)
EMBO J
, vol.25
, pp. 2889-2897
-
-
Masuda, M.1
Takeda, S.2
Sone, M.3
Ohki, T.4
Mori, H.5
Kamioka, Y.6
-
24
-
-
79953862815
-
Mechanism of membrane curvature sensing by amphipathic helix containing proteins
-
H.S. Cui, E. Lyman, and G.A. Voth Mechanism of membrane curvature sensing by amphipathic helix containing proteins Biophys J 100 2011 1271 1279
-
(2011)
Biophys J
, vol.100
, pp. 1271-1279
-
-
Cui, H.S.1
Lyman, E.2
Voth, G.A.3
-
25
-
-
77951896130
-
Amphipathic helices and membrane curvature
-
G. Drin, and B. Antonny Amphipathic helices and membrane curvature FEBS Lett 584 2010 1840 1847
-
(2010)
FEBS Lett
, vol.584
, pp. 1840-1847
-
-
Drin, G.1
Antonny, B.2
-
26
-
-
84865748441
-
Membrane bending by protein-protein crowding
-
J.C. Stachowiak, E.M. Schmid, C.J. Ryan, H.S. Ann, D.Y. Sasaki, and M.B. Sherman Membrane bending by protein-protein crowding Nat Cell Biol 14 2012 944
-
(2012)
Nat Cell Biol
, vol.14
, pp. 944
-
-
Stachowiak, J.C.1
Schmid, E.M.2
Ryan, C.J.3
Ann, H.S.4
Sasaki, D.Y.5
Sherman, M.B.6
-
27
-
-
79953740665
-
Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids
-
T. Baumgart, B.R. Capraro, C. Zhu, and S.L. Das Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids Annu Rev Phys Chem 62 2011 483 506
-
(2011)
Annu Rev Phys Chem
, vol.62
, pp. 483-506
-
-
Baumgart, T.1
Capraro, B.R.2
Zhu, C.3
Das, S.L.4
-
28
-
-
77952216490
-
Macromolecules that prefer their membrane curvy
-
K.C. Huang, and K.S. Ramanurthi Macromolecules that prefer their membrane curvy Mol Microbiol 76 2010 822 832
-
(2010)
Mol Microbiol
, vol.76
, pp. 822-832
-
-
Huang, K.C.1
Ramanurthi, K.S.2
-
29
-
-
77953293697
-
Molecular mechanisms in signal transduction at the membrane
-
J.T. Groves, and J. Kuriyan Molecular mechanisms in signal transduction at the membrane Nat Struct Mol Biol 17 2010 659 665
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 659-665
-
-
Groves, J.T.1
Kuriyan, J.2
-
30
-
-
79959397904
-
Mechanisms of membrane curvature sensing
-
B. Antonny Mechanisms of membrane curvature sensing Annu Rev Biochem 80 2011 101 123
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 101-123
-
-
Antonny, B.1
-
31
-
-
84862106953
-
The three cornerstones of chemical biology: Innovative probes, new discoveries, and enabling tools
-
A.D. Thompson, L.N. Makley, K. McMenimen, and J.E. Gestwicki The three cornerstones of chemical biology: Innovative probes, new discoveries, and enabling tools ACS Chem Biol 7 2012 791 796
-
(2012)
ACS Chem Biol
, vol.7
, pp. 791-796
-
-
Thompson, A.D.1
Makley, L.N.2
McMenimen, K.3
Gestwicki, J.E.4
-
32
-
-
80052177663
-
Macromolecular organization of ATP synthase and complex i in whole mitochondria
-
K.M. Davies, M. Strauss, B. Daum, J.H. Kief, H.D. Osiewacz, and A. Rycovska Macromolecular organization of ATP synthase and complex I in whole mitochondria Proc Natl Acad Sci USA 108 2011 14121 14126
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 14121-14126
-
-
Davies, K.M.1
Strauss, M.2
Daum, B.3
Kief, J.H.4
Osiewacz, H.D.5
Rycovska, A.6
-
33
-
-
79955025448
-
Cardiolipin microdomains localize to negatively curved regions of Escherichia coli membranes
-
L.D. Renner, and D.B. Weibel Cardiolipin microdomains localize to negatively curved regions of Escherichia coli membranes Proc Natl Acad Sci USA 108 2011 6264 6269
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 6264-6269
-
-
Renner, L.D.1
Weibel, D.B.2
-
34
-
-
84869055020
-
MinD and MinE interact with anionic phospholipids and regulate division plane formation in Escherichia coli
-
L.D. Renner, and D.B. Weibel MinD and MinE interact with anionic phospholipids and regulate division plane formation in Escherichia coli J Biol Chem 287 2012 38835 38844
-
(2012)
J Biol Chem
, vol.287
, pp. 38835-38844
-
-
Renner, L.D.1
Weibel, D.B.2
-
35
-
-
84874599376
-
Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc(1)
-
C. Arnarez, J.P. Mazat, J. Elezgaray, S.J. Marrink, and X. Periole Evidence for cardiolipin binding sites on the membrane-exposed surface of the cytochrome bc(1) J Am Chem Soc 135 2013 3112 3120
-
(2013)
J Am Chem Soc
, vol.135
, pp. 3112-3120
-
-
Arnarez, C.1
Mazat, J.P.2
Elezgaray, J.3
Marrink, S.J.4
Periole, X.5
-
36
-
-
84861367246
-
Biomolecular simulation: A computational microscope for molecular biology
-
R.O. Dror, R.M. Dirks, J.P. Grossman, H.F. Xu, and D.E. Shaw Biomolecular simulation: a computational microscope for molecular biology Annu Rev Biophys 41 2012 429 452
-
(2012)
Annu Rev Biophys
, vol.41
, pp. 429-452
-
-
Dror, R.O.1
Dirks, R.M.2
Grossman, J.P.3
Xu, H.F.4
Shaw, D.E.5
-
37
-
-
64649084606
-
Molecular dynamics simulations of membrane channels and transporters
-
F. Khalili-Araghi, J. Gumbart, P.C. Wen, M. Sotomayor, E. Tajkhorshid, and K. Schulten Molecular dynamics simulations of membrane channels and transporters Curr Opin Struct Biol 19 2009 128 137
-
(2009)
Curr Opin Struct Biol
, vol.19
, pp. 128-137
-
-
Khalili-Araghi, F.1
Gumbart, J.2
Wen, P.C.3
Sotomayor, M.4
Tajkhorshid, E.5
Schulten, K.6
-
38
-
-
84861779104
-
How snare molecules mediate membrane fusion: Recent insights from molecular simulations
-
H.J. Risselada, and H. Grubmüller How snare molecules mediate membrane fusion: recent insights from molecular simulations Curr Opin Struct Biol 22 2012 187 196
-
(2012)
Curr Opin Struct Biol
, vol.22
, pp. 187-196
-
-
Risselada, H.J.1
Grubmüller, H.2
-
39
-
-
77953377650
-
Update of the charmm all-atom additive force field for lipids: Validation on six lipid types
-
J.B. Klauda, R.M. Venable, J.A. Freites, J.W. O'Connor, D.J. Tobias, and C. Mondragon-Ramirez Update of the charmm all-atom additive force field for lipids: validation on six lipid types J Phys Chem B 114 2010 7830 7843
-
(2010)
J Phys Chem B
, vol.114
, pp. 7830-7843
-
-
Klauda, J.B.1
Venable, R.M.2
Freites, J.A.3
O'Connor, J.W.4
Tobias, D.J.5
Mondragon-Ramirez, C.6
-
40
-
-
84878152855
-
Bending free energy from simulation: Correspondence of planar and inverse hexagonal lipid phases
-
A.J. Sodt, and R.W. Pastor Bending free energy from simulation: correspondence of planar and inverse hexagonal lipid phases Biophys J 104 2013 2202 2211
-
(2013)
Biophys J
, vol.104
, pp. 2202-2211
-
-
Sodt, A.J.1
Pastor, R.W.2
-
41
-
-
77149136136
-
Simulation of osmotic pressure in concentrated aqueous salt solutions
-
Y. Luo, and B. Roux Simulation of osmotic pressure in concentrated aqueous salt solutions J Phys Chem Lett 1 2010 183 189
-
(2010)
J Phys Chem Lett
, vol.1
, pp. 183-189
-
-
Luo, Y.1
Roux, B.2
-
42
-
-
83455177932
-
Statistical convergence of equilibrium properties in simulations of molecular solutes embedded in lipid bilayers
-
C. Neale, W.F.D. Bennett, D.P. Tieleman, and R. Pomes Statistical convergence of equilibrium properties in simulations of molecular solutes embedded in lipid bilayers J Chem Theory Comput 7 2011 4175 4188
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 4175-4188
-
-
Neale, C.1
Bennett, W.F.D.2
Tieleman, D.P.3
Pomes, R.4
-
43
-
-
79958806229
-
Atomistic simulation of mixed-lipid bilayers: Mixed methods for mixed membranes
-
J.T. Kindt Atomistic simulation of mixed-lipid bilayers: mixed methods for mixed membranes Mol Simulat 37 2011 516 524
-
(2011)
Mol Simulat
, vol.37
, pp. 516-524
-
-
Kindt, J.T.1
-
44
-
-
34247098754
-
Multiscale modeling of biomolecular systems: In serial and in parallel
-
G.S. Ayton, W.G. Noid, and G.A. Voth Multiscale modeling of biomolecular systems: in serial and in parallel Curr Opin Struct Biol 17 2007 192 198
-
(2007)
Curr Opin Struct Biol
, vol.17
, pp. 192-198
-
-
Ayton, G.S.1
Noid, W.G.2
Voth, G.A.3
-
45
-
-
66249104660
-
Mesoscopic membrane physics: Concepts, simulations, and selected applications
-
M. Deserno Mesoscopic membrane physics: concepts, simulations, and selected applications Macromol Rapid Commun 30 2009 752 771
-
(2009)
Macromol Rapid Commun
, vol.30
, pp. 752-771
-
-
Deserno, M.1
-
46
-
-
84861770615
-
Coarse-graining of multiprotein assemblies
-
M.G. Saunders, and G.A. Voth Coarse-graining of multiprotein assemblies Curr Opin Struct Biol 22 2012 144 150
-
(2012)
Curr Opin Struct Biol
, vol.22
, pp. 144-150
-
-
Saunders, M.G.1
Voth, G.A.2
-
47
-
-
84861773417
-
Coarse-grained molecular simulations of large biomolecules
-
S. Takada Coarse-grained molecular simulations of large biomolecules Curr Opin Struct Biol 22 2012 130 137
-
(2012)
Curr Opin Struct Biol
, vol.22
, pp. 130-137
-
-
Takada, S.1
-
48
-
-
84861784814
-
Computer simulation studies of self-assembling macromolecules
-
W. Shinoda, R. DeVane, and M.L. Klein Computer simulation studies of self-assembling macromolecules Curr Opin Struct Biol 22 2012 175 186
-
(2012)
Curr Opin Struct Biol
, vol.22
, pp. 175-186
-
-
Shinoda, W.1
Devane, R.2
Klein, M.L.3
-
49
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
S.J. Marrink, H.J. Risselada, S. Yefimov, D.P. Tieleman, and A.H. de Vries The MARTINI force field: coarse grained model for biomolecular simulations J Phys Chem B 111 2007 7812 7824
-
(2007)
J Phys Chem B
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
De Vries, A.H.5
-
50
-
-
49449113010
-
The MARTINI coarse-grained force field: Extension to proteins
-
L. Monticelli, S.K. Kandasamy, X. Periole, R.G. Larson, D.P. Tieleman, and S.J. Marrink The MARTINI coarse-grained force field: Extension to proteins J Chem Theory Comput 4 2008 819 834
-
(2008)
J Chem Theory Comput
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
51
-
-
84872142909
-
Improved parameters for the MARTINI coarse-grained protein force field
-
D.H. de Jong, G. Singh, W.F.D. Bennett, C. Arnarez, T.A. Wassenaar, and L.V. Schafer Improved parameters for the MARTINI coarse-grained protein force field J Chem Theory Comput 9 2013 687 697
-
(2013)
J Chem Theory Comput
, vol.9
, pp. 687-697
-
-
De Jong, D.H.1
Singh, G.2
Bennett, W.F.D.3
Arnarez, C.4
Wassenaar, T.A.5
Schafer, L.V.6
-
52
-
-
77955561671
-
A new coarse-grained model for water: The importance of electrostatic interactions
-
Z. Wu, Q. Cui, and A. Yethiraj A new coarse-grained model for water: the importance of electrostatic interactions J Phys Chem B 114 2010 10524 10529
-
(2010)
J Phys Chem B
, vol.114
, pp. 10524-10529
-
-
Wu, Z.1
Cui, Q.2
Yethiraj, A.3
-
53
-
-
79960726143
-
A new coarse-grained force field for membrane-peptide simulations
-
Z. Wu, Q. Cui, and A. Yethiraj A new coarse-grained force field for membrane-peptide simulations J Chem Theory Comput 7 2011 3793 3802
-
(2011)
J Chem Theory Comput
, vol.7
, pp. 3793-3802
-
-
Wu, Z.1
Cui, Q.2
Yethiraj, A.3
-
54
-
-
84876274935
-
Cytochrome c causes pore formation in cardiolipin-containing membranes
-
C.L. Bergstrom, P.A. Baeles, Y. Lv, T.K. Vanderlick, and J.T. Groves Cytochrome c causes pore formation in cardiolipin-containing membranes Proc Natl Acad Sci USA 110 2013 6269 6274
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, pp. 6269-6274
-
-
Bergstrom, C.L.1
Baeles, P.A.2
Lv, Y.3
Vanderlick, T.K.4
Groves, J.T.5
-
55
-
-
79955709659
-
Dual-resolution molecular dynamics simulation of antimicrobials in biomembranes
-
M. Orsi, M.G. Noro, and J.W. Essex Dual-resolution molecular dynamics simulation of antimicrobials in biomembranes J Roy Soc Interface 8 2011 826 841
-
(2011)
J Roy Soc Interface
, vol.8
, pp. 826-841
-
-
Orsi, M.1
Noro, M.G.2
Essex, J.W.3
-
56
-
-
79959749835
-
Hybrid simulations: Combining atomistic and coarse-grained force fields using virtual sites
-
A.J. Rzepiela, M. Louhivuori, C. Peter, and S.J. Marrink Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites Phys Chem Chem Phys 13 2011 10437 10448
-
(2011)
Phys Chem Chem Phys
, vol.13
, pp. 10437-10448
-
-
Rzepiela, A.J.1
Louhivuori, M.2
Peter, C.3
Marrink, S.J.4
-
57
-
-
84865383775
-
On developing coarse-grained models for biomolecular simulation: A review
-
S. Riniker, J.R. Allison, and W.F. van Gunsteren On developing coarse-grained models for biomolecular simulation: a review Phys Chem Chem Phys 14 2012 12423 12430
-
(2012)
Phys Chem Chem Phys
, vol.14
, pp. 12423-12430
-
-
Riniker, S.1
Allison, J.R.2
Van Gunsteren, W.F.3
-
58
-
-
84875777145
-
Mixing MARTINI: Electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations
-
T.A. Wassenaar, H.I. Ingolfsson, M. Priebeta, S.J. Marrink, and L.V. Schäfer Mixing MARTINI: electrostatic coupling in hybrid atomistic-coarse-grained biomolecular simulations J Phys Chem B 117 2013 3516 3530
-
(2013)
J Phys Chem B
, vol.117
, pp. 3516-3530
-
-
Wassenaar, T.A.1
Ingolfsson, H.I.2
Priebeta, M.3
Marrink, S.J.4
Schäfer, L.V.5
-
59
-
-
77957897253
-
Recent progress in adaptive multiscale molecular dynamics simulations of soft matter
-
S.O. Nielsen, R.E. Bulo, P.B. Moore, and B. Ensing Recent progress in adaptive multiscale molecular dynamics simulations of soft matter Phys Chem Chem Phys 12 2010 12401 12414
-
(2010)
Phys Chem Chem Phys
, vol.12
, pp. 12401-12414
-
-
Nielsen, S.O.1
Bulo, R.E.2
Moore, P.B.3
Ensing, B.4
-
61
-
-
77950584902
-
Software news and update reconstruction of atomistic details from coarse-grained structures
-
A.J. Rzepiela, L.V. Schäfer, N. Goga, H.J. Risselada, A.H. de Vries, and S.J. Marrink Software news and update reconstruction of atomistic details from coarse-grained structures J Comput Chem 31 2010 1333 1343
-
(2010)
J Comput Chem
, vol.31
, pp. 1333-1343
-
-
Rzepiela, A.J.1
Schäfer, L.V.2
Goga, N.3
Risselada, H.J.4
De Vries, A.H.5
Marrink, S.J.6
-
62
-
-
84874167209
-
A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores
-
J. Yoo, M.B. Jackson, and Q. Cui A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores Biophys J 104 2013 841 852
-
(2013)
Biophys J
, vol.104
, pp. 841-852
-
-
Yoo, J.1
Jackson, M.B.2
Cui, Q.3
-
63
-
-
80455164853
-
Quantitative modeling of membrane deformations by multihelical membrane proteins: Application to G-protein coupled receptors
-
Mondal S, Khelashvili G, Shan J, Andersen OS, Weinstein H. Quantitative modeling of membrane deformations by multihelical membrane proteins: application to G-protein coupled receptors. Biophys J 2011;101:2902-101.
-
(2011)
Biophys J
, vol.101
, pp. 2902-3101
-
-
Mondal, S.1
Khelashvili, G.2
Shan, J.3
Andersen, O.S.4
Weinstein, H.5
-
64
-
-
84872134392
-
Membrane-mediated protein-protein interactions and connection to elastic models: A coarse-grained simulation analysis of gramicidin A association
-
J. Yoo, and Q. Cui Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association Biophys J 104 2013 128 138
-
(2013)
Biophys J
, vol.104
, pp. 128-138
-
-
Yoo, J.1
Cui, Q.2
-
65
-
-
80052871176
-
Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects
-
F.L.H. Brown Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects Q Rev Biophys 44 2011 391 432
-
(2011)
Q Rev Biophys
, vol.44
, pp. 391-432
-
-
Brown, F.L.H.1
-
66
-
-
77950595062
-
Multiscale simulation of protein mediated membrane remodeling
-
G.S. Ayton, and G.A. Voth Multiscale simulation of protein mediated membrane remodeling Semin Cell Dev Biol 21 2010 357 362
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 357-362
-
-
Ayton, G.S.1
Voth, G.A.2
-
67
-
-
0242322528
-
An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins
-
W. Im, M. Feig, and C.L. Brooks An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins Biophys J 85 2003 2900 2918
-
(2003)
Biophys J
, vol.85
, pp. 2900-2918
-
-
Im, W.1
Feig, M.2
Brooks, C.L.3
-
68
-
-
0038675609
-
Effective energy function for proteins in lipid membranes
-
T. Lazaridis Effective energy function for proteins in lipid membranes Proteins: Struct Funct Gene 52 2003 176 192
-
(2003)
Proteins: Struct Funct Gene
, vol.52
, pp. 176-192
-
-
Lazaridis, T.1
-
69
-
-
77953705223
-
Antimicrobial peptides bind more strongly to membrane pores
-
M. Mihajlovic, and T. Lazaridis Antimicrobial peptides bind more strongly to membrane pores Biochim Biophys Acta - Biomem 1798 2010 1494 1502
-
(2010)
Biochim Biophys Acta - Biomem
, vol.1798
, pp. 1494-1502
-
-
Mihajlovic, M.1
Lazaridis, T.2
-
70
-
-
84873383442
-
Inclusion of lateral pressure/curvature stress effects in implicit membrane models
-
H. Zhan, and T. Lazaridis Inclusion of lateral pressure/curvature stress effects in implicit membrane models Biophys J 104 2013 643 654
-
(2013)
Biophys J
, vol.104
, pp. 643-654
-
-
Zhan, H.1
Lazaridis, T.2
-
71
-
-
44349099863
-
A continuum method for determining membrane protein insertion energies and the problem of charged residues
-
S. Choe, K.A. Hecht, and M. Grabe A continuum method for determining membrane protein insertion energies and the problem of charged residues J Gen Physiol 131 2008 563 573
-
(2008)
J Gen Physiol
, vol.131
, pp. 563-573
-
-
Choe, S.1
Hecht, K.A.2
Grabe, M.3
-
72
-
-
84874927085
-
Dynamic heterogeneous dielectric generalized born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness
-
A. Panahi, and M. Feig Dynamic heterogeneous dielectric generalized born (DHDGB): an implicit membrane model with a dynamically varying bilayer thickness J Chem Theory Comput 9 2013 1709 1719
-
(2013)
J Chem Theory Comput
, vol.9
, pp. 1709-1719
-
-
Panahi, A.1
Feig, M.2
-
73
-
-
33750037303
-
Direct observation of Bin/Amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations
-
P.D. Blood, and G.A. Voth Direct observation of Bin/Amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations Proc Natl Acad Sci USA 103 2006 15068 15072
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 15068-15072
-
-
Blood, P.D.1
Voth, G.A.2
-
74
-
-
44949104715
-
HIV TAT forms pores in membrans by inducing saddle-splay curvature: Potential role of bidentate hydrogen bonding
-
A. Mishra, V.D. Gordon, L. Yang, R. Coridan, and G.C.L. Wong HIV TAT forms pores in membrans by inducing saddle-splay curvature: potential role of bidentate hydrogen bonding Angew Chem Int Ed Engl 47 2008 2986 2989
-
(2008)
Angew Chem Int Ed Engl
, vol.47
, pp. 2986-2989
-
-
Mishra, A.1
Gordon, V.D.2
Yang, L.3
Coridan, R.4
Wong, G.C.L.5
-
76
-
-
84856278457
-
Molecular view of the role of fusion peptides in promoting positive membrane curvature
-
M. Fuhrmans, and S.J. Marrink Molecular view of the role of fusion peptides in promoting positive membrane curvature J Am Chem Soc 134 2012 1543 1552
-
(2012)
J Am Chem Soc
, vol.134
, pp. 1543-1552
-
-
Fuhrmans, M.1
Marrink, S.J.2
-
78
-
-
84876741297
-
Self-assembly of gemini surfactants: A computer simulation study
-
J. Mondal, M.K. Mahanthappa, and A. Yethiraj Self-assembly of gemini surfactants: a computer simulation study J Phys Chem B 117 2013 4254 4262
-
(2013)
J Phys Chem B
, vol.117
, pp. 4254-4262
-
-
Mondal, J.1
Mahanthappa, M.K.2
Yethiraj, A.3
-
79
-
-
0033794501
-
Polyargnine enters cells more efficiently than other polycationic homopolymers
-
D.J. Mitchell, L. Steinman, D.T. Kim, C.G. Fathman, and J.B. Rothbard Polyargnine enters cells more efficiently than other polycationic homopolymers J Pept Res 56 2000 318 325
-
(2000)
J Pept Res
, vol.56
, pp. 318-325
-
-
Mitchell, D.J.1
Steinman, L.2
Kim, D.T.3
Fathman, C.G.4
Rothbard, J.B.5
-
80
-
-
84885585787
-
Why do Poly-Arg and Poly-Lys organize lipids differently? Insights from coarse-grained and atomistic simulations
-
submitted for publication
-
Wu Z, Cui Q, Yethiraj A. Why do Poly-Arg and Poly-Lys organize lipids differently? Insights from coarse-grained and atomistic simulations. J Phys Chem B; 2013, submitted for publication.
-
(2013)
J Phys Chem B
-
-
Wu, Z.1
Cui, Q.2
Yethiraj, A.3
-
81
-
-
80054764378
-
Translocation of HIV TAT peptide and analogues induced by multiplexed membrane and cytoskeletal interactions
-
A. Mishra, G.H. Lai, N.W. Schmidt, V.Z. Sun, A.R. Rodriguez, and R. Tong Translocation of HIV TAT peptide and analogues induced by multiplexed membrane and cytoskeletal interactions Proc Natl Acad Sci USA 108 2011 16883 16888
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 16883-16888
-
-
Mishra, A.1
Lai, G.H.2
Schmidt, N.W.3
Sun, V.Z.4
Rodriguez, A.R.5
Tong, R.6
-
82
-
-
84869386745
-
Molecular basis for nanoscopic membrane curvature generation from quantum mechanical models and synthetic transporter sequences
-
N.W. Schmidt, M. Lis, K. Zhao, G.H. Lai, A.N. Alexandrova, and G.N. Tew Molecular basis for nanoscopic membrane curvature generation from quantum mechanical models and synthetic transporter sequences J Am Chem Soc 134 2012 19207 19216
-
(2012)
J Am Chem Soc
, vol.134
, pp. 19207-19216
-
-
Schmidt, N.W.1
Lis, M.2
Zhao, K.3
Lai, G.H.4
Alexandrova, A.N.5
Tew, G.N.6
-
83
-
-
27644470173
-
Dendrimetic molecular transporters: Synthesis and evaluation of tunable polyguanidino dendrimers that facilitate cellular uptake
-
P.A. Wender, E. Kreider, E.T. Pelkey, J. Rothbard, and C.L. VanDeusen Dendrimetic molecular transporters: synthesis and evaluation of tunable polyguanidino dendrimers that facilitate cellular uptake Org Lett 7 2005 452 472
-
(2005)
Org Lett
, vol.7
, pp. 452-472
-
-
Wender, P.A.1
Kreider, E.2
Pelkey, E.T.3
Rothbard, J.4
Vandeusen, C.L.5
-
84
-
-
33748451900
-
Molecular dynamics study of MscL interactions with a curved lipid bilayer
-
G.R. Meyer, J. Gullingsrud, K. Schulten, and B. Martinac Molecular dynamics study of MscL interactions with a curved lipid bilayer Biophys J 91 2006 1630 1637
-
(2006)
Biophys J
, vol.91
, pp. 1630-1637
-
-
Meyer, G.R.1
Gullingsrud, J.2
Schulten, K.3
Martinac, B.4
-
85
-
-
61349109472
-
3D pressure field in lipid membranes and membrane-protein complexes
-
O.H.S. Ollila, H.J. Risselada, M. Louhivuori, E. Lindahl, I. Vattulainen, and S.J. Marrink 3D pressure field in lipid membranes and membrane-protein complexes Phys Rev Lett 102 2009 078101
-
(2009)
Phys Rev Lett
, vol.102
, pp. 078101
-
-
Ollila, O.H.S.1
Risselada, H.J.2
Louhivuori, M.3
Lindahl, E.4
Vattulainen, I.5
Marrink, S.J.6
-
86
-
-
33751577958
-
A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers
-
V.A. Harmandaris, and M. Deserno A novel method for measuring the bending rigidity of model lipid membranes by simulating tethers J Chem Phys 125 2006 204905
-
(2006)
J Chem Phys
, vol.125
, pp. 204905
-
-
Harmandaris, V.A.1
Deserno, M.2
-
87
-
-
55549092456
-
Bilayer edge and curvature effects on partitioning of lipids by tail length: Atomistic simulations
-
H. Wang, J. de Joannis, Y. Jiang, J.C. Gaulding, B. Albrecht, and F. Yin Bilayer edge and curvature effects on partitioning of lipids by tail length: atomistic simulations Biophys J 95 2008 2647 2657
-
(2008)
Biophys J
, vol.95
, pp. 2647-2657
-
-
Wang, H.1
De Joannis, J.2
Jiang, Y.3
Gaulding, J.C.4
Albrecht, B.5
Yin, F.6
-
88
-
-
84872575353
-
MARCKS-ED peptide as a curvature and lipid sensor
-
L.A. Morton, H. Yang, J.P. Saludes, Z. Fiorini, L. Beninson, and E.R. Chapman MARCKS-ED peptide as a curvature and lipid sensor ACS Chem Biol 8 2013 218 225
-
(2013)
ACS Chem Biol
, vol.8
, pp. 218-225
-
-
Morton, L.A.1
Yang, H.2
Saludes, J.P.3
Fiorini, Z.4
Beninson, L.5
Chapman, E.R.6
-
89
-
-
84860451216
-
Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model
-
Y.Z. Ohkubo, T.V. Pogorelov, M.J. Arcario, G.A. Christensen, and E. Tajkhorshid Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model Biophys J 102 2012 2130 2139
-
(2012)
Biophys J
, vol.102
, pp. 2130-2139
-
-
Ohkubo, Y.Z.1
Pogorelov, T.V.2
Arcario, M.J.3
Christensen, G.A.4
Tajkhorshid, E.5
-
90
-
-
53249125167
-
Four-scale description of membrane sculpting by BAR domains
-
A. Arkhipov, Y. Yin, and K. Schulten Four-scale description of membrane sculpting by BAR domains Biophys J 95 2008 2806 2821
-
(2008)
Biophys J
, vol.95
, pp. 2806-2821
-
-
Arkhipov, A.1
Yin, Y.2
Schulten, K.3
-
91
-
-
58149181485
-
Lipids on the move: Simulations of membrane pores, domains, stalks and curves
-
S.J. Marrink, A.H. de Vries, and D.P. Tieleman Lipids on the move: simulations of membrane pores, domains, stalks and curves Biochim Biophys Acta - Biomem 1788 2009 149 168
-
(2009)
Biochim Biophys Acta - Biomem
, vol.1788
, pp. 149-168
-
-
Marrink, S.J.1
De Vries, A.H.2
Tieleman, D.P.3
-
92
-
-
0035471135
-
β-peptides: From structure to function
-
R.P. Cheng, S.H. Gellman, and W.F. Degrado β-peptides: from structure to function Chem Rev 101 2001 3219 3232
-
(2001)
Chem Rev
, vol.101
, pp. 3219-3232
-
-
Cheng, R.P.1
Gellman, S.H.2
Degrado, W.F.3
-
93
-
-
0542421525
-
Foldamers: A manifesto
-
S.H. Gellman Foldamers: a manifesto Acc Chem Res 31 1998 173 180
-
(1998)
Acc Chem Res
, vol.31
, pp. 173-180
-
-
Gellman, S.H.1
-
94
-
-
0037202210
-
Structure-activity studies of 14-helical antimicrobial β-peptides: Probing the relationship between conformational stability and antimicrobial potency
-
T.L. Raguse, E.A. Porter, and S.H. Gellman Structure-activity studies of 14-helical antimicrobial β-peptides: probing the relationship between conformational stability and antimicrobial potency J Am Chem Soc 124 2002 12774 12785
-
(2002)
J Am Chem Soc
, vol.124
, pp. 12774-12785
-
-
Raguse, T.L.1
Porter, E.A.2
Gellman, S.H.3
-
95
-
-
0037178109
-
Mimicry of host-defense peptides by unnatural oligomers: Antimicrobial β-peptides
-
E.A. Porter, B. Weisblum, and S.H. Gellman Mimicry of host-defense peptides by unnatural oligomers: antimicrobial β-peptides J Am Chem Soc 124 2002 7324 7330
-
(2002)
J Am Chem Soc
, vol.124
, pp. 7324-7330
-
-
Porter, E.A.1
Weisblum, B.2
Gellman, S.H.3
-
96
-
-
33846251959
-
Interplay among folding, sequence, and lipophilicity in the antibacterial and hemolytic activities of α/β-peptides
-
M.A. Schmitt, B. Weisblum, and S.H. Gellman Interplay among folding, sequence, and lipophilicity in the antibacterial and hemolytic activities of α/β-peptides J Am Chem Soc 129 2007 417 428
-
(2007)
J Am Chem Soc
, vol.129
, pp. 417-428
-
-
Schmitt, M.A.1
Weisblum, B.2
Gellman, S.H.3
-
98
-
-
67650806449
-
Effect of sequence and structural properties on 14-helical β-peptide activity against candida albicans planktonic cells and biofilms
-
A.J. Karlsson, W.L. Pomerantz, K.J. Neilsen, S.H. Gellman, and S.P. Palecek Effect of sequence and structural properties on 14-helical β-peptide activity against candida albicans planktonic cells and biofilms ACS Chem Biol 4 2009 567 579
-
(2009)
ACS Chem Biol
, vol.4
, pp. 567-579
-
-
Karlsson, A.J.1
Pomerantz, W.L.2
Neilsen, K.J.3
Gellman, S.H.4
Palecek, S.P.5
-
99
-
-
37849015194
-
Mimicry of antimicrobial host-defense peptides by random copolymers
-
B.P. Mowery, S.E. Lee, D.A. Kissounko, R.F. Epand, B. Weisblum, and S.S. Stahl Mimicry of antimicrobial host-defense peptides by random copolymers J Am Chem Soc 129 2007 15474 15475
-
(2007)
J Am Chem Soc
, vol.129
, pp. 15474-15475
-
-
Mowery, B.P.1
Lee, S.E.2
Kissounko, D.A.3
Epand, R.F.4
Weisblum, B.5
Stahl, S.S.6
-
100
-
-
67650504185
-
Structure-activity relationships among random nylon-3 copolymers that mimic antibacterial host-defense peptides
-
B.P. Mowery, A.H. Lindner, B. Weisblum, S.S. Stahl, and S.H. Gellman Structure-activity relationships among random nylon-3 copolymers that mimic antibacterial host-defense peptides J Am Chem Soc 131 2009 9735 9745
-
(2009)
J Am Chem Soc
, vol.131
, pp. 9735-9745
-
-
Mowery, B.P.1
Lindner, A.H.2
Weisblum, B.3
Stahl, S.S.4
Gellman, S.H.5
-
101
-
-
42749091734
-
Dual mechanism of bacterial lethality for a cationic sequence-random copolymer that mimics host-defense antimicrobial peptides
-
R.F. Epand, B.P. Mowery, S.E. Lee, S.S. Stahl, R.I. Lehrer, and S.H. Gellman Dual mechanism of bacterial lethality for a cationic sequence-random copolymer that mimics host-defense antimicrobial peptides J Mol Biol 379 2008 38 50
-
(2008)
J Mol Biol
, vol.379
, pp. 38-50
-
-
Epand, R.F.1
Mowery, B.P.2
Lee, S.E.3
Stahl, S.S.4
Lehrer, R.I.5
Gellman, S.H.6
-
102
-
-
77958460527
-
Sequence-dependent interaction of β-peptides with membranes
-
J. Mondal, X. Zhu, Q. Cui, and A. Yethiraj Sequence-dependent interaction of β-peptides with membranes J Phys Chem B 114 2010 13585 13592
-
(2010)
J Phys Chem B
, vol.114
, pp. 13585-13592
-
-
Mondal, J.1
Zhu, X.2
Cui, Q.3
Yethiraj, A.4
-
103
-
-
36048981812
-
Establishing effective simulation protocols for β and mixed α/β peptides, I. QM and QM/MM models
-
X. Zhu, A. Yethiraj, and Q. Cui Establishing effective simulation protocols for β and mixed α/β peptides, I. QM and QM/MM models J Chem Theory Comput 3 2007 1538 1549
-
(2007)
J Chem Theory Comput
, vol.3
, pp. 1538-1549
-
-
Zhu, X.1
Yethiraj, A.2
Cui, Q.3
-
104
-
-
47149101260
-
Establishing effective simulation protocols for β- And α/β-peptides. II. Molecular Mechanical (MM) model for a cyclic β-residue
-
X. Zhu, P. König, S. Gellman, A. Yethiraj, and Q. Cui Establishing effective simulation protocols for β- and α/β-peptides. II. Molecular Mechanical (MM) model for a cyclic β-residue J Phys Chem B 112 2008 5439 5448
-
(2008)
J Phys Chem B
, vol.112
, pp. 5439-5448
-
-
Zhu, X.1
König, P.2
Gellman, S.3
Yethiraj, A.4
Cui, Q.5
-
105
-
-
77953440782
-
Establishing effective simulation protocols for β- And α/β-peptides. III. Molecular Mechanical (MM) model for a non-cyclic β-residue
-
X. Zhu, P. König, M. Hoffman, A. Yethiraj, and Q. Cui Establishing effective simulation protocols for β- and α/β-peptides. III. Molecular Mechanical (MM) model for a non-cyclic β-residue J Comput Chem 31 2010 2063 2077
-
(2010)
J Comput Chem
, vol.31
, pp. 2063-2077
-
-
Zhu, X.1
König, P.2
Hoffman, M.3
Yethiraj, A.4
Cui, Q.5
-
106
-
-
0023018907
-
Deformation free-energy of bilayer-membrane and its effect on gramicidin channel lifetime
-
H.W. Huang Deformation free-energy of bilayer-membrane and its effect on gramicidin channel lifetime Biophys J 50 1986 1061 1070
-
(1986)
Biophys J
, vol.50
, pp. 1061-1070
-
-
Huang, H.W.1
-
107
-
-
0031754539
-
Curvature-mediated interactions between membrane proteins
-
K.S. Kim, J. Neu, and G. Oster Curvature-mediated interactions between membrane proteins Biophys J 75 1998 2274 2291
-
(1998)
Biophys J
, vol.75
, pp. 2274-2291
-
-
Kim, K.S.1
Neu, J.2
Oster, G.3
-
108
-
-
0034172777
-
Effect of protein shape on multibody interactions between membrane inclusions
-
K.S. Kim, J. Neu, and G. Oster Effect of protein shape on multibody interactions between membrane inclusions Phys Rev E 61 2000 4281 4285
-
(2000)
Phys Rev e
, vol.61
, pp. 4281-4285
-
-
Kim, K.S.1
Neu, J.2
Oster, G.3
-
109
-
-
0035115108
-
Statistical thermodynamics of membrane bending-mediated protein-protein attractions
-
T. Chou, K.S. Kim, and G. Oster Statistical thermodynamics of membrane bending-mediated protein-protein attractions Biophys J 80 2001 1075 1087
-
(2001)
Biophys J
, vol.80
, pp. 1075-1087
-
-
Chou, T.1
Kim, K.S.2
Oster, G.3
-
110
-
-
70449096451
-
Curvature generation and pressure profile modulation in membrane by lysolipids: Insights from coarse-grained simulations
-
J. Yoo, and Q. Cui Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations Biophys J 97 2009 2267 2276
-
(2009)
Biophys J
, vol.97
, pp. 2267-2276
-
-
Yoo, J.1
Cui, Q.2
-
111
-
-
33244458728
-
Gating prokaryotic mechanosensitive channels
-
E. Perozo Gating prokaryotic mechanosensitive channels Nat Rev Mol Cell Biol 7 2006 109 119
-
(2006)
Nat Rev Mol Cell Biol
, vol.7
, pp. 109-119
-
-
Perozo, E.1
-
112
-
-
23644451510
-
A possible unifying principle for mechanosensation
-
C. Kung A possible unifying principle for mechanosensation Nature 436 2005 647 654
-
(2005)
Nature
, vol.436
, pp. 647-654
-
-
Kung, C.1
-
113
-
-
58049194119
-
+ channel gating and voltage sensor toxin sensitivity depend on the mechanical state of the lipid membrane
-
+ channel gating and voltage sensor toxin sensitivity depend on the mechanical state of the lipid membrane Proc Natl Acad Sci USA 105 2008 19276 19281
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 19276-19281
-
-
Schmidt, D.1
Mackinnon, R.2
-
114
-
-
34347262391
-
Bilayer thickness and membrane protein function: An energetic perspective
-
O.S. Andersen, and R.E. Koeppe Bilayer thickness and membrane protein function: an energetic perspective Annu Rev Biophys Biomol Struct 36 2007 107 130
-
(2007)
Annu Rev Biophys Biomol Struct
, vol.36
, pp. 107-130
-
-
Andersen, O.S.1
Koeppe, R.E.2
-
115
-
-
66249083118
-
Emerging roles for lipids in shaping membrane-protein function
-
R. Phillips, T. Ursell, P. Wiggins, and P. Sens Emerging roles for lipids in shaping membrane-protein function Nature 459 2009 379 385
-
(2009)
Nature
, vol.459
, pp. 379-385
-
-
Phillips, R.1
Ursell, T.2
Wiggins, P.3
Sens, P.4
-
117
-
-
34249325178
-
Aggregation and vesiculation of membrane proteins by curvature-mediated interactions
-
B.J. Reynwar, G. Illya, V.A. Harmandaris, M.M. Muller, K. Kremer, and M. Deserno Aggregation and vesiculation of membrane proteins by curvature-mediated interactions Nature 447 2007 461 464
-
(2007)
Nature
, vol.447
, pp. 461-464
-
-
Reynwar, B.J.1
Illya, G.2
Harmandaris, V.A.3
Muller, M.M.4
Kremer, K.5
Deserno, M.6
-
118
-
-
76049124690
-
Lipid bilayer regulation of membrane protein function: Gramicidin channels as molecular force probes
-
J.A. Lundbæk, S.A. Collingwood, H.I. Ingólfsson, R. Kapoor, and O.S. Andersen Lipid bilayer regulation of membrane protein function: gramicidin channels as molecular force probes J R Soc Interface 7 2010 373 395
-
(2010)
J R Soc Interface
, vol.7
, pp. 373-395
-
-
Lundbæk, J.A.1
Collingwood, S.A.2
Ingólfsson, H.I.3
Kapoor, R.4
Andersen, O.S.5
-
119
-
-
0038370007
-
Hydrophobic coupling of lipid bilayer energetics to channel function
-
R.L. Goforth, A.K. Chi, D.V. Greathouse, L.L. Providence, R.E. Koeppe, and O.S. Andersen Hydrophobic coupling of lipid bilayer energetics to channel function J Gen Physiol 121 2003 477 493
-
(2003)
J Gen Physiol
, vol.121
, pp. 477-493
-
-
Goforth, R.L.1
Chi, A.K.2
Greathouse, D.V.3
Providence, L.L.4
Koeppe, R.E.5
Andersen, O.S.6
-
120
-
-
84872138492
-
Three-dimensional stress field around a membrane protein: Atomistic and coarse-grained simulation analysis of gramicidin A
-
J. Yoo, and Q. Cui Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A Biophys J 104 2013 117 127
-
(2013)
Biophys J
, vol.104
, pp. 117-127
-
-
Yoo, J.1
Cui, Q.2
-
121
-
-
84859408685
-
Influence of hydrophobic mismatch on structures and dynamics of gramicidin A and lipid bilayers
-
T. Kim, K. Lee, P. Morris, R.W. Pastor, O.S. Andersen, and W. Im Influence of hydrophobic mismatch on structures and dynamics of gramicidin A and lipid bilayers Biophys J 102 2012 1551 1560
-
(2012)
Biophys J
, vol.102
, pp. 1551-1560
-
-
Kim, T.1
Lee, K.2
Morris, P.3
Pastor, R.W.4
Andersen, O.S.5
Im, W.6
-
122
-
-
70350223829
-
Towards an understanding of membrane-mediated protein-protein interactions
-
discussion 445-81
-
M. Yiannourakou, L. Marsella, F. de Meyer, and B. Smit Towards an understanding of membrane-mediated protein-protein interactions Faraday Discuss 144 2010 359 367 discussion 445-81
-
(2010)
Faraday Discuss
, vol.144
, pp. 359-367
-
-
Yiannourakou, M.1
Marsella, L.2
De Meyer, F.3
Smit, B.4
-
123
-
-
80052494607
-
Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class
-
D.L. Parton, J.W. Klingelhoefer, and M.S.P. Sansom Aggregation of model membrane proteins, modulated by hydrophobic mismatch, membrane curvature, and protein class Biophys J 101 2011 691 699
-
(2011)
Biophys J
, vol.101
, pp. 691-699
-
-
Parton, D.L.1
Klingelhoefer, J.W.2
Sansom, M.S.P.3
-
124
-
-
80053632190
-
Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching
-
H.-J.J. Kaiser, A. Orlowski, T. Róg, T.K.M. Nyholm, W. Chai, and T. Feizi Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching Proc Natl Acad Sci USA 108 2011 16628 16633
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 16628-16633
-
-
Kaiser, H.-J.J.1
Orlowski, A.2
Róg, T.3
Nyholm, T.K.M.4
Chai, W.5
Feizi, T.6
-
125
-
-
33645028968
-
Striated domains: Self-organizing ordered assemblies of transmembrane alpha-helical peptides and lipids in bilayers
-
B. de Kruijff, J.A. Killian, D.N. Ganchev, H.A. Rinia, and E. Sparr Striated domains: self-organizing ordered assemblies of transmembrane alpha-helical peptides and lipids in bilayers Biol Chem 387 2006 235 241
-
(2006)
Biol Chem
, vol.387
, pp. 235-241
-
-
De Kruijff, B.1
Killian, J.A.2
Ganchev, D.N.3
Rinia, H.A.4
Sparr, E.5
-
126
-
-
0030012156
-
Gramicidin A aggregation in supported gel state phosphatidylcholine bilayers
-
J. Mou, D.M. Czajkowsky, and Z. Shao Gramicidin A aggregation in supported gel state phosphatidylcholine bilayers Biochemistry 35 1996 3222 3226
-
(1996)
Biochemistry
, vol.35
, pp. 3222-3226
-
-
Mou, J.1
Czajkowsky, D.M.2
Shao, Z.3
-
127
-
-
79953857432
-
Bilayer-mediated clustering and functional interaction of MscL channels
-
S.L. Grage, A.M. Keleshian, T. Turdzeladze, A.R. Battle, W.C. Tay, and R.P. May Bilayer-mediated clustering and functional interaction of MscL channels Biophys J 100 2011 1252 1260
-
(2011)
Biophys J
, vol.100
, pp. 1252-1260
-
-
Grage, S.L.1
Keleshian, A.M.2
Turdzeladze, T.3
Battle, A.R.4
Tay, W.C.5
May, R.P.6
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