-
3
-
-
77649139375
-
Membrane curvature in synaptic vesicle fusion and beyond
-
H.T. McMahon, M.M. Kozlov, and S. Martens Membrane curvature in synaptic vesicle fusion and beyond Cell 140 2010 601 605
-
(2010)
Cell
, vol.140
, pp. 601-605
-
-
McMahon, H.T.1
Kozlov, M.M.2
Martens, S.3
-
5
-
-
84943997802
-
Elastic properties of lipid bilayers: Theory and possible experiments
-
W. Helfrich Elastic properties of lipid bilayers: theory and possible experiments Z. Naturforsch. C 28 1973 693 703
-
(1973)
Z. Naturforsch. C
, vol.28
, pp. 693-703
-
-
Helfrich, W.1
-
6
-
-
0024395893
-
Stalk mechanism of vesicle fusion. Intermixing of aqueous contents
-
M.M. Kozlov, and S.L. Leikin Y.A. Chizmadzhev Stalk mechanism of vesicle fusion. Intermixing of aqueous contents Eur. Biophys. J. 17 1989 121 129
-
(1989)
Eur. Biophys. J.
, vol.17
, pp. 121-129
-
-
Kozlov, M.M.1
Leikin, S.L.2
Chizmadzhev, Y.A.3
-
7
-
-
0036154247
-
Stalk model of membrane fusion: Solution of energy crisis
-
Y. Kozlovsky, and M.M. Kozlov Stalk model of membrane fusion: solution of energy crisis Biophys. J. 82 2002 882 895
-
(2002)
Biophys. J.
, vol.82
, pp. 882-895
-
-
Kozlovsky, Y.1
Kozlov, M.M.2
-
8
-
-
0036158070
-
Membrane fusion: Stalk model revisited
-
V.S. Markin, and J.P. Albanesi Membrane fusion: stalk model revisited Biophys. J. 82 2002 693 712
-
(2002)
Biophys. J.
, vol.82
, pp. 693-712
-
-
Markin, V.S.1
Albanesi, J.P.2
-
9
-
-
0032926928
-
The modified stalk mechanism of lamellar/inverted phase transitions and its implications for membrane fusion
-
D.P. Siegel The modified stalk mechanism of lamellar/inverted phase transitions and its implications for membrane fusion Biophys. J. 76 1999 291 313
-
(1999)
Biophys. J.
, vol.76
, pp. 291-313
-
-
Siegel, D.P.1
-
10
-
-
71449089900
-
Minimum membrane bending energies of fusion pores
-
M.B. Jackson Minimum membrane bending energies of fusion pores J. Membr. Biol. 231 2009 101 115
-
(2009)
J. Membr. Biol.
, vol.231
, pp. 101-115
-
-
Jackson, M.B.1
-
12
-
-
84861779104
-
How SNARE molecules mediate membrane fusion: Recent insights from molecular simulations
-
H.J. Risselada, and H. Grubmüller How SNARE molecules mediate membrane fusion: recent insights from molecular simulations Curr. Opin. Struct. Biol. 22 2012 187 196
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 187-196
-
-
Risselada, H.J.1
Grubmüller, H.2
-
13
-
-
77955486396
-
Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails
-
P.M. Kasson, E. Lindahl, and V.S. Pande Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails PLOS Comput. Biol. 6 2010 e1000829
-
(2010)
PLOS Comput. Biol.
, vol.6
, pp. 1000829
-
-
Kasson, P.M.1
Lindahl, E.2
Pande, V.S.3
-
14
-
-
79952740863
-
Water ordering at membrane interfaces controls fusion dynamics
-
P.M. Kasson, E. Lindahl, and V.S. Pande Water ordering at membrane interfaces controls fusion dynamics J. Am. Chem. Soc. 133 2011 3812 3815
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 3812-3815
-
-
Kasson, P.M.1
Lindahl, E.2
Pande, V.S.3
-
15
-
-
33747064957
-
Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion
-
P.M. Kasson, and N.W. Kelley V.S. Pande Ensemble molecular dynamics yields submillisecond kinetics and intermediates of membrane fusion Proc. Natl. Acad. Sci. USA 103 2006 11916 11921
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 11916-11921
-
-
Kasson, P.M.1
Kelley, N.W.2
Pande, V.S.3
-
16
-
-
79960419904
-
Lipid acrobatics in the membrane fusion arena
-
A.J. Markvoort, and S.J. Marrink Lipid acrobatics in the membrane fusion arena Curr. Top. Membr 68 2011 259 294
-
(2011)
Curr. Top. Membr
, vol.68
, pp. 259-294
-
-
Markvoort, A.J.1
Marrink, S.J.2
-
17
-
-
79960182810
-
Development of the CHARMM force field for lipids
-
R.W. Pastor, and A.D. MacKerell Jr. Development of the CHARMM force field for lipids J. Phys. Chem. Lett 2 2011 1526 1532
-
(2011)
J. Phys. Chem. Lett
, vol.2
, pp. 1526-1532
-
-
Pastor, R.W.1
MacKerell Jr., A.D.2
-
18
-
-
0036036436
-
Quasicontinuum representations of atomic-scale mechanics: From proteins to dislocations
-
R. Phillips, M. Dittrich, and K. Schulten Quasicontinuum representations of atomic-scale mechanics: from proteins to dislocations Annu. Rev. Mater. Res. 32 2002 219 233
-
(2002)
Annu. Rev. Mater. Res.
, vol.32
, pp. 219-233
-
-
Phillips, R.1
Dittrich, M.2
Schulten, K.3
-
19
-
-
18744391399
-
Structural dynamics of the Lac repressor-DNA complex revealed by a multiscale simulation
-
E. Villa, A. Balaeff, and K. Schulten Structural dynamics of the Lac repressor-DNA complex revealed by a multiscale simulation Proc. Natl. Acad. Sci. USA 102 2005 6783 6788
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 6783-6788
-
-
Villa, E.1
Balaeff, A.2
Schulten, K.3
-
20
-
-
34247098754
-
Multiscale modeling of biomolecular systems: In serial and in parallel
-
G.S. Ayton, W.G. Noid, and G.A. Voth Multiscale modeling of biomolecular systems: in serial and in parallel Curr. Opin. Struct. Biol. 17 2007 192 198
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 192-198
-
-
Ayton, G.S.1
Noid, W.G.2
Voth, G.A.3
-
21
-
-
77950595062
-
Multiscale simulation of protein mediated membrane remodeling
-
G.S. Ayton, and G.A. Voth Multiscale simulation of protein mediated membrane remodeling Semin. Cell Dev. Biol. 21 2010 357 362
-
(2010)
Semin. Cell Dev. Biol.
, vol.21
, pp. 357-362
-
-
Ayton, G.S.1
Voth, G.A.2
-
22
-
-
79959747191
-
Reconstructing protein remodeled membranes in molecular detail from mesoscopic models
-
E. Lyman, H.S. Cui, and G.A. Voth Reconstructing protein remodeled membranes in molecular detail from mesoscopic models Phys. Chem. Chem. Phys. 13 2011 10430 10436
-
(2011)
Phys. Chem. Chem. Phys.
, vol.13
, pp. 10430-10436
-
-
Lyman, E.1
Cui, H.S.2
Voth, G.A.3
-
25
-
-
0031445916
-
Flickering fusion pores comparable with initial exocytotic pores occur in protein-free phospholipid bilayers
-
A. Chanturiya, L.V. Chernomordik, and J. Zimmerberg Flickering fusion pores comparable with initial exocytotic pores occur in protein-free phospholipid bilayers Proc. Natl. Acad. Sci. USA 94 1997 14423 14428
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14423-14428
-
-
Chanturiya, A.1
Chernomordik, L.V.2
Zimmerberg, J.3
-
26
-
-
0031697748
-
Effects of spontaneous bilayer curvature on influenza virus-mediated fusion pores
-
V.I. Razinkov, and G.B. Melikyan F.S. Cohen Effects of spontaneous bilayer curvature on influenza virus-mediated fusion pores J. Gen. Physiol. 112 1998 409 422
-
(1998)
J. Gen. Physiol.
, vol.112
, pp. 409-422
-
-
Razinkov, V.I.1
Melikyan, G.B.2
Cohen, F.S.3
-
27
-
-
16344374383
-
Field theoretic study of bilayer membrane fusion. I. Hemifusion mechanism
-
K. Katsov, M. Müller, and M. Schick Field theoretic study of bilayer membrane fusion. I. Hemifusion mechanism Biophys. J. 87 2004 3277 3290
-
(2004)
Biophys. J.
, vol.87
, pp. 3277-3290
-
-
Katsov, K.1
Müller, M.2
Schick, M.3
-
28
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
S.J. Marrink, and H.J. Risselada A.H. de Vries The MARTINI force field: coarse grained model for biomolecular simulations J. Phys. Chem. B 111 2007 7812 7824
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
De Vries, A.H.3
-
29
-
-
0037072603
-
Observation of a membrane fusion intermediate structure
-
L. Yang, and H.W. Huang Observation of a membrane fusion intermediate structure Science 297 2002 1877 1879
-
(2002)
Science
, vol.297
, pp. 1877-1879
-
-
Yang, L.1
Huang, H.W.2
-
30
-
-
36549103866
-
Molecular theory of curvature elasticity in surfactant films
-
I. Szleifer, and D. Kramer S.A. Safran Molecular theory of curvature elasticity in surfactant films J. Chem. Phys. 92 1990 6800 6817
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 6800-6817
-
-
Szleifer, I.1
Kramer, D.2
Safran, S.A.3
-
31
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
D. van der Spoel, and E. Lindahl H.J. Berendsen GROMACS: fast, flexible, and free J. Comput. Chem. 26 2005 1701 1718
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Berendsen, H.J.3
-
32
-
-
79960726143
-
A new coarse-grained force field for membrane-peptide simulations
-
Z. Wu, Q. Cui, and A. Yethiraj A new coarse-grained force field for membrane-peptide simulations J. Chem. Theory Comput. 11 2011 3793 3802
-
(2011)
J. Chem. Theory Comput.
, vol.11
, pp. 3793-3802
-
-
Wu, Z.1
Cui, Q.2
Yethiraj, A.3
-
33
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
H.J.C. Berendsen, and J.P.M. Postma J.R. Haak Molecular dynamics with coupling to an external bath J. Chem. Phys. 81 1984 3684 3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Haak, J.R.3
-
34
-
-
0004150063
-
-
Cambridge University Press Cambridge, UK
-
D. Boal Mechanics of the Cell 2002 Cambridge University Press Cambridge, UK
-
(2002)
Mechanics of the Cell
-
-
Boal, D.1
-
35
-
-
33750931433
-
Elastic curvature constants of lipid monolayers and bilayers
-
D. Marsh Elastic curvature constants of lipid monolayers and bilayers Chem. Phys. Lipids 144 2006 146 159
-
(2006)
Chem. Phys. Lipids
, vol.144
, pp. 146-159
-
-
Marsh, D.1
-
36
-
-
70449096451
-
Curvature generation and pressure profile modulation in membrane by lysolipids: Insights from coarse-grained simulations
-
J. Yoo, and Q. Cui Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations Biophys. J. 97 2009 2267 2276
-
(2009)
Biophys. J.
, vol.97
, pp. 2267-2276
-
-
Yoo, J.1
Cui, Q.2
-
37
-
-
84872138492
-
Three-dimensional stress field around a membrane protein: Atomistic and coarse-grained simulation analysis of gramicidin A
-
J. Yoo, and Q. Cui Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A Biophys. J. 104 2012 117 127
-
(2012)
Biophys. J.
, vol.104
, pp. 117-127
-
-
Yoo, J.1
Cui, Q.2
-
39
-
-
3042812311
-
Molecular dynamics simulations of the lipid bilayer edge
-
F.Y. Jiang, Y. Bouret, and J.T. Kindt Molecular dynamics simulations of the lipid bilayer edge Biophys. J. 87 2004 182 192
-
(2004)
Biophys. J.
, vol.87
, pp. 182-192
-
-
Jiang, F.Y.1
Bouret, Y.2
Kindt, J.T.3
-
40
-
-
55549092456
-
Bilayer edge and curvature effects on partitioning of lipids by tail length: Atomistic simulations
-
H. Wang, and J. de Joannis J.T. Kindt Bilayer edge and curvature effects on partitioning of lipids by tail length: atomistic simulations Biophys. J. 95 2008 2647 2657
-
(2008)
Biophys. J.
, vol.95
, pp. 2647-2657
-
-
Wang, H.1
De Joannis, J.2
Kindt, J.T.3
-
41
-
-
3042776328
-
The Gaussian curvature elastic modulus of n-monomethylated dioleoylphosphatidylethanolamine: Relevance to membrane fusion and lipid phase behavior
-
D.P. Siegel, and M.M. Kozlov The Gaussian curvature elastic modulus of n-monomethylated dioleoylphosphatidylethanolamine: relevance to membrane fusion and lipid phase behavior Biophys. J. 87 2004 366 374
-
(2004)
Biophys. J.
, vol.87
, pp. 366-374
-
-
Siegel, D.P.1
Kozlov, M.M.2
-
42
-
-
0038290760
-
Protein-lipid interplay in fusion and fission of biological membranes
-
L.V. Chernomordik, and M.M. Kozlov Protein-lipid interplay in fusion and fission of biological membranes Annu. Rev. Biochem. 72 2003 175 207
-
(2003)
Annu. Rev. Biochem.
, vol.72
, pp. 175-207
-
-
Chernomordik, L.V.1
Kozlov, M.M.2
-
43
-
-
0028845658
-
Membrane mechanics can account for fusion pore dilation in stages
-
Y.A. Chizmadzhev, and F.S. Cohen J. Zimmerberg Membrane mechanics can account for fusion pore dilation in stages Biophys. J. 69 1995 2489 2500
-
(1995)
Biophys. J.
, vol.69
, pp. 2489-2500
-
-
Chizmadzhev, Y.A.1
Cohen, F.S.2
Zimmerberg, J.3
-
45
-
-
0030783371
-
The mechanism of lamellar-to-inverted hexagonal phase transitions in phosphatidylethanolamine: Implications for membrane fusion mechanisms
-
D.P. Siegel, and R.M. Epand The mechanism of lamellar-to-inverted hexagonal phase transitions in phosphatidylethanolamine: implications for membrane fusion mechanisms Biophys. J. 73 1997 3089 3111
-
(1997)
Biophys. J.
, vol.73
, pp. 3089-3111
-
-
Siegel, D.P.1
Epand, R.M.2
-
46
-
-
41649099937
-
Protein diffusion on charged membranes: A dynamic mean-field model describes time evolution and lipid reorganization
-
G. Khelashvili, H. Weinstein, and D. Harries Protein diffusion on charged membranes: a dynamic mean-field model describes time evolution and lipid reorganization Biophys. J. 94 2008 2580 2597
-
(2008)
Biophys. J.
, vol.94
, pp. 2580-2597
-
-
Khelashvili, G.1
Weinstein, H.2
Harries, D.3
-
48
-
-
80455164853
-
Quantitative modeling of membrane deformations by multihelical membrane proteins: Application to G-protein coupled receptors
-
S. Mondal, and G. Khelashvili H. Weinstein Quantitative modeling of membrane deformations by multihelical membrane proteins: application to G-protein coupled receptors Biophys. J. 101 2011 2092 2101
-
(2011)
Biophys. J.
, vol.101
, pp. 2092-2101
-
-
Mondal, S.1
Khelashvili, G.2
Weinstein, H.3
-
49
-
-
84872134392
-
Membrane-mediated protein-protein interactions and connection to elastic models: A coarse-grained simulation analysis of gramicidin A association
-
J. Yoo, and Q. Cui Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association Biophys. J. 104 2012 128 138
-
(2012)
Biophys. J.
, vol.104
, pp. 128-138
-
-
Yoo, J.1
Cui, Q.2
-
50
-
-
43949090857
-
Elastic modeling of biomembranes and lipid bilayers
-
F.L. Brown Elastic modeling of biomembranes and lipid bilayers Annu. Rev. Phys. Chem. 59 2008 685 712
-
(2008)
Annu. Rev. Phys. Chem.
, vol.59
, pp. 685-712
-
-
Brown, F.L.1
-
51
-
-
80052871176
-
Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects
-
F.L.H. Brown Continuum simulations of biomembrane dynamics and the importance of hydrodynamic effects Q. Rev. Biophys. 44 2011 391 432
-
(2011)
Q. Rev. Biophys.
, vol.44
, pp. 391-432
-
-
Brown, F.L.H.1
|