-
1
-
-
34347262391
-
Bilayer thickness and membrane protein function: An energetic perspective
-
Andersen, O. S., and R. E. Koeppe, II. 2007. Bilayer thickness and membrane protein function: an energetic perspective. Annu. Rev. Biophys. Biomol. Struct. 36:107-130.
-
(2007)
Annu. Rev. Biophys. Biomol. Struct.
, vol.36
, pp. 107-130
-
-
Andersen, O.S.1
Koeppe II, R.E.2
-
2
-
-
66249083118
-
Emerging roles for lipids in shaping membrane-protein function
-
Phillips, R., T. Ursell, P. Wiggins, and P. Sens. 2009. Emerging roles for lipids in shaping membrane-protein function. Nature. 459:379-385.
-
(2009)
Nature
, vol.459
, pp. 379-385
-
-
Phillips, R.1
Ursell, T.2
Wiggins, P.3
Sens, P.4
-
3
-
-
33244458728
-
Gating prokaryotic mechanosensitive channels
-
Perozo, E. 2006. Gating prokaryotic mechanosensitive channels. Nat. Rev. Mol. Cell Biol. 7:109-119.
-
(2006)
Nat. Rev. Mol. Cell Biol.
, vol.7
, pp. 109-119
-
-
Perozo, E.1
-
4
-
-
23644451510
-
A possible unifying principle for mechanosensation
-
Kung, C. 2005. A possible unifying principle for mechanosensation. Nature. 436:647-654.
-
(2005)
Nature
, vol.436
, pp. 647-654
-
-
Kung, C.1
-
5
-
-
67749114701
-
State-stabilizing interactions in the bacterial mechanosensitive channel gating and adaptation
-
In press
-
Anishkin, A., and S. Sukharev. 2009. State-stabilizing interactions in the bacterial mechanosensitive channel gating and adaptation. J. Biol. Chem. In press.
-
(2009)
J. Biol. Chem.
-
-
Anishkin, A.1
Sukharev, S.2
-
6
-
-
58049194119
-
+ channel gating and voltage sensor toxin sensitivity depend on the mechanical state of the lipid membrane
-
+ channel gating and voltage sensor toxin sensitivity depend on the mechanical state of the lipid membrane. Proc. Natl. Acad. Sci. USA. 105:19276-19281.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 19276-19281
-
-
Schmidt, D.1
MacKinnon, R.2
-
7
-
-
33745634914
-
Regulation of membrane protein function by lipid bilayer elasticity-a single molecule technology to measure the bilayer properties experienced by an embedded protein
-
Lundbaek, J. A. 2006. Regulation of membrane protein function by lipid bilayer elasticity-a single molecule technology to measure the bilayer properties experienced by an embedded protein. J. Phys. Condens. Matter. 18:S1305-S1344.
-
(2006)
J. Phys. Condens. Matter.
, vol.18
-
-
Lundbaek, J.A.1
-
8
-
-
0025150146
-
Elastic deformation and failure of lipid bilayer membranes containing cholesterol
-
Needham, D., and R. S. Nunn. 1990. Elastic deformation and failure of lipid bilayer membranes containing cholesterol. Biophys. J. 58:997-1009. (Pubitemid 20307868)
-
(1990)
Biophysical Journal
, vol.58
, Issue.4
, pp. 997-1009
-
-
Needham, D.1
Nunn, R.S.2
-
9
-
-
2342469391
-
Regulation of sodium channel function by bilayer elasticity: The importance of hydrophobic coupling. Effects of micelle-forming amphiphiles and cholesterol
-
Lundbaek, J. A., P. Bim, A. J. Hansen, R. Sogaard, C. Nielsen, et al. 2004. Regulation of sodium channel function by bilayer elasticity: the importance of hydrophobic coupling. effects of micelle-forming amphiphiles and cholesterol. J. Gen. Physiol. 123:599-621.
-
(2004)
J. Gen. Physiol.
, vol.123
, pp. 599-621
-
-
Lundbaek, J.A.1
Bim, P.2
Hansen, A.J.3
Sogaard, R.4
Nielsen, C.5
-
10
-
-
23944464223
-
Capsaicin regulates voltage-dependent sodium channels by altering lipid bilayer elasticity
-
Lundbaek, J. A., P. Birn, S. E. Tape, G. E. S. Toombes, R. Sogaard, et al. 2005. Capsaicin regulates voltage-dependent sodium channels by altering lipid bilayer elasticity. Mol. Pharm. 68:680-689.
-
(2005)
Mol. Pharm.
, vol.68
, pp. 680-689
-
-
Lundbaek, J.A.1
Birn, P.2
Tape, S.E.3
Toombes, G.E.S.4
Sogaard, R.5
-
11
-
-
0041929590
-
Structure and mechanism in prokaryotic mechanosensitive channels
-
Perozo, E., and D. C. Rees. 2003. Structure and mechanism in prokaryotic mechanosensitive channels. Curr. Opin. Struct. Biol. 13:432-442.
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 432-442
-
-
Perozo, E.1
Rees, D.C.2
-
12
-
-
0037194760
-
Open channel structure of MscL and the gating mechanism of mechanosensitive channels
-
DOI 10.1038/nature00992
-
Perozo, E., D. M. Cortes, P. Sompornpisut, A. Kloda, and B. Martinac. 2002a. Open channel structure of MscL and the gating mechanism of mechanosensitive channels. Nature. 418:942-948. (Pubitemid 34976024)
-
(2002)
Nature
, vol.418
, Issue.6901
, pp. 942-948
-
-
Perozo, E.1
Cortes, D.M.2
Sompornpisut, P.3
Kloda, A.4
Martinac, B.5
-
13
-
-
0036725152
-
Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating
-
Perozo, E., A. Kloda, D. M. Cortes, and B. Martinac. 2002. Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating. Nat. Struct. Biol. 9:696-703.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 696-703
-
-
Perozo, E.1
Kloda, A.2
Cortes, D.M.3
Martinac, B.4
-
14
-
-
50649109171
-
A structural mechanism for MscS gating in lipid bilayers
-
Vásquez, V., M. Sotomayor, J. Cordero Morales, K. Schulten, and E. Perozo. 2008. A structural mechanism for MscS gating in lipid bilayers. Science. 321:1210-1214.
-
(2008)
Science
, vol.321
, pp. 1210-1214
-
-
Vásquez, V.1
Sotomayor, M.2
Cordero Morales, J.3
Schulten, K.4
Perozo, E.5
-
15
-
-
0001098317
-
Lateral pressures in cell membranes: A mechanism for modulation of protein function
-
Cantor, R. S. 1997. Lateral pressures in cell membranes: a mechanism for modulation of protein function. J. Phys. Chem. B. 101:1723-1725.
-
(1997)
J. Phys. Chem. B.
, vol.101
, pp. 1723-1725
-
-
Cantor, R.S.1
-
16
-
-
2942675244
-
Lipid Bilayer pressure profiles and mechanosensitive channel gating
-
DOI 10.1529/biophysj.103.034322
-
Gullingsrud, J., and K. Schulten. 2004. Lipid bilayer pressure profiles and mechanosensitive channel gating. Biophys. J. 86:3496-3509. (Pubitemid 38780232)
-
(2004)
Biophysical Journal
, vol.86
, Issue.6
, pp. 3496-3509
-
-
Gullingsrud, J.1
Schulten, K.2
-
17
-
-
61349109472
-
3D pressure field in lipid membranes and membraneprotein complexes
-
Ollila, O. H. S., H. J. Risselada, M. Louhivuori, E. Lindahl, I. Vattulainen, et al. 2009. 3D pressure field in lipid membranes and membraneprotein complexes. Phys. Rev. Lett. 102:078101.
-
(2009)
Phys. Rev. Lett.
, vol.102
, pp. 078101
-
-
Ollila, O.H.S.1
Risselada, H.J.2
Louhivuori, M.3
Lindahl, E.4
Vattulainen, I.5
-
18
-
-
34547474332
-
The MARTINI force field: Coarse grained model for biomolecular simulations
-
Marrink, S. J., H. J. Risselada, S. Yefimov, D. P. Tieleman, and A. H. de Vries. 2007. The MARTINI force field: coarse grained model for biomolecular simulations. J. Phys. Chem. B. 111:7812-7824.
-
(2007)
J. Phys. Chem. B.
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
De Vries, A.H.5
-
19
-
-
33748451900
-
Molecular dynamics study of MscL interactions with a curved lipid bilayer
-
DOI 10.1529/biophysj.106.080721
-
Meyer, G. R., J. Gullingsrud, K. Schulten, and B. Martinac. 2006. Molecular dynamics study of MscL interactions with a curved lipid bilayer. Biophys. J. 91:1630-1637. (Pubitemid 44352429)
-
(2006)
Biophysical Journal
, vol.91
, Issue.5
, pp. 1630-1637
-
-
Meyer, G.R.1
Gullingsrud, J.2
Schulten, K.3
Martinac, B.4
-
20
-
-
0032545321
-
Structure of the MscL homolog from Mycobacterium tuberculosis: A gated mechanosensitive ion channel
-
DOI 10.1126/science.282.5397.2220
-
Chang, G., R. H. Spencer, A. T. Lee, M. T. Barclay, and D. C. Rees. 1998. Structure of the MscL homolog from Mycobacterium tuberculosis: a gated mechanosensitive ion channel. Science. 282:2220-2226. (Pubitemid 29004063)
-
(1998)
Science
, vol.282
, Issue.5397
, pp. 2220-2226
-
-
Chang, G.1
Spencer, R.H.2
Lee, A.T.3
Barclay, M.T.4
Rees, D.C.5
-
21
-
-
21244464270
-
Membrane-protein interactions in mechanosensitive channels
-
Wiggins, P., and R. Phillips. 2005. Membrane-protein interactions in mechanosensitive channels. Biophys. J. 88:880-902.
-
(2005)
Biophys. J.
, vol.88
, pp. 880-902
-
-
Wiggins, P.1
Phillips, R.2
-
22
-
-
33746828240
-
A finite element framework for studying the mechanical response of macromolecules: Application to the gating of the mechanosensitive channel MscL
-
DOI 10.1529/biophysj.106.085985
-
Tang, Y., G. Cao, X. Chen, J. Yoo, A. Yethiraj, et al. 2006. A finite element framework for studying the mechanical response of macromolecules: application to the gating of the mechanosensitive channel MscL. Biophys. J. 91:1248-1263. (Pubitemid 44177370)
-
(2006)
Biophysical Journal
, vol.91
, Issue.4
, pp. 1248-1263
-
-
Tang, Y.1
Cao, G.2
Chen, X.3
Yoo, J.4
Yethiraj, A.5
Cui, Q.6
-
23
-
-
47749128439
-
Gating mechanisms of mechanosensitive channels of large conductance. II. Systematic study of conformational transitions
-
Tang, Y., J. Yoo, A. Yethiraj, Q. Cui, and X. Chen. 2008. Gating mechanisms of mechanosensitive channels of large conductance. II. Systematic study of conformational transitions. Biophys. J. 95:581-596.
-
(2008)
Biophys. J.
, vol.95
, pp. 581-596
-
-
Tang, Y.1
Yoo, J.2
Yethiraj, A.3
Cui, Q.4
Chen, X.5
-
24
-
-
47749143970
-
Gating mechanisms of mechanosensitive channels of large conductance. I. A continuum mechanics-based hierarchical framework
-
Chen, X., Q. Cui, Y. Y. Tang, J. Yoo, and A. Yethiraj. 2008. Gating mechanisms of mechanosensitive channels of large conductance. I. A continuum mechanics-based hierarchical framework. Biophys. J. 95:563-580.
-
(2008)
Biophys. J.
, vol.95
, pp. 563-580
-
-
Chen, X.1
Cui, Q.2
Tang, Y.Y.3
Yoo, J.4
Yethiraj, A.5
-
25
-
-
49449113010
-
The MARTINI coarse-grained force field: Extension to proteins
-
Monticelli, L., S. Kandasamy, X. Periole, R. Larson, D. P. Tieleman, et al. 2008. The MARTINI coarse-grained force field: extension to proteins. J. Chem. Theory Comput. 4:819-834.
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.2
Periole, X.3
Larson, R.4
Tieleman, D.P.5
-
26
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., J. P. M. Postma, W. F. Van Gunsteren, A. Dinola, and J. R. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
27
-
-
27344454932
-
GROMACS: Fast, flexible, and free
-
Van Der Spoel, D., E. Lindahl, B. Hess, G. Groenhof, A. E. Mark, et al. 2005. GROMACS: fast, flexible, and free. J. Comput. Chem. 26:1701-1718.
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701-1718
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
-
28
-
-
0003879578
-
-
Addison-Wesley, New York
-
Safran, S. A. 1994. Statistical Thermodynamics of Surfaces, Interfaces, and Membranes, Vol.60. Addison-Wesley, New York.
-
(1994)
Statistical Thermodynamics of Surfaces, Interfaces, and Membranes
, vol.60
-
-
Safran, S.A.1
-
29
-
-
23244440564
-
-
American Mathematical Society, Providence, RI
-
Kühnel, W. 2006. Differential Geometry: Curves, Surfaces, Manifolds. American Mathematical Society, Providence, RI.
-
(2006)
Differential Geometry: Curves, Surfaces, Manifolds
-
-
Kühnel, W.1
-
30
-
-
0004150063
-
-
Cambridge University Press, Cambridge, UK
-
Boal, D. 2002. Mechanics of the Cell. Cambridge University Press, Cambridge, UK.
-
(2002)
Mechanics of the Cell
-
-
Boal, D.1
-
31
-
-
0003474751
-
-
3rd Ed. Cambridge University Press, Cambridge, UK
-
Press, W. H., S. A. Teukolsky, W. T. Vetterling, and B. F. Flannery. 2007. Numerical Recipes: The Art of Scientific Computing, 3rd Ed. Cambridge University Press, Cambridge, UK.
-
(2007)
Numerical Recipes: The Art of Scientific Computing
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.F.4
-
32
-
-
36749107929
-
Formulas for determining local properties in molecular-dynamics simulations: Shock waves
-
Hardy, R. J. 1982. Formulas for determining local properties in molecular-dynamics simulations: shock waves. J. Chem. Phys. 76:622-628.
-
(1982)
J. Chem. Phys.
, vol.76
, pp. 622-628
-
-
Hardy, R.J.1
-
33
-
-
33646967528
-
The statistical mechanical theory of transport processes. IV. The equations of hydrodynamics
-
Irving, J. H., and J. G. Kirkwood. 1950. The statistical mechanical theory of transport processes. IV. The equations of hydrodynamics. J. Chem. Phys. 18:817-829.
-
(1950)
J. Chem. Phys.
, vol.18
, pp. 817-829
-
-
Irving, J.H.1
Kirkwood, J.G.2
-
34
-
-
3142605093
-
Calculation of stress in atomistic simulation
-
Zimmerman, J. A., E. B. Webb, J. J. Hoyt, R. E. Jones, P. A. Klein, et al. 2004. Calculation of stress in atomistic simulation. Model. Simul. Mater. Sci. Eng. 12:S319-S332.
-
(2004)
Model. Simul. Mater. Sci. Eng.
, vol.12
-
-
Zimmerman, J.A.1
Webb, E.B.2
Hoyt, J.J.3
Jones, R.E.4
Klein, P.A.5
-
35
-
-
0034271962
-
Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations
-
Lindahl, E., and O. Edholm. 2000. Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations. J. Chem. Phys. 113:3882-3893.
-
(2000)
J. Chem. Phys.
, vol.113
, pp. 3882-3893
-
-
Lindahl, E.1
Edholm, O.2
-
37
-
-
45849126131
-
Considerations for lipid force field development
-
Klauda, J. B., R. M. Venable, A. D. MacKerell, and R. W. Pastor. 2008. Considerations for lipid force field development. Curr. Topics Membr. 60:1-48.
-
(2008)
Curr. Topics Membr.
, vol.60
, pp. 1-48
-
-
Klauda, J.B.1
Venable, R.M.2
MacKerell, A.D.3
Pastor, R.W.4
-
38
-
-
0001166110
-
Size-dependent response of liposomes to phospholipid transmembrane redistribution: From shape change to induced tension
-
Farge, E., and P. F. Devaux. 1993. Size-dependent response of liposomes to phospholipid transmembrane redistribution: from shape change to induced tension. J. Phys. Chem. 97:2958-2961.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 2958-2961
-
-
Farge, E.1
Devaux, P.F.2
-
39
-
-
0036708455
-
Asymmetrical membranes and surface tension
-
Traïkia, M., D. E. Warschawski, O. Lambert, J.-L. L. Rigaud, and P. F. Devaux. 2002. Asymmetrical membranes and surface tension. Biophys. J. 83:1443-1454.
-
(2002)
Biophys. J.
, vol.83
, pp. 1443-1454
-
-
Traïkia, M.1
Warschawski, D.E.2
Lambert, O.3
Rigaud, J.-L.L.4
Devaux, P.F.5
-
40
-
-
31544483303
-
Cholesterol hydroxyl group is found to reside in the center of a polyunsaturated lipid membrane
-
Harroun, T. A., J. Katsaras, and S. R. Wassall. 2006. Cholesterol hydroxyl group is found to reside in the center of a polyunsaturated lipid membrane. Biochemistry. 45:1227-1233.
-
(2006)
Biochemistry
, vol.45
, pp. 1227-1233
-
-
Harroun, T.A.1
Katsaras, J.2
Wassall, S.R.3
-
41
-
-
38349032639
-
Cholesterol shows preference for the interior of polyunsaturated lipid membranes
-
Marrink, S. J., A. H. de Vries, T. A. Harroun, J. Katsaras, and S. R. Wassall. 2008. Cholesterol shows preference for the interior of polyunsaturated lipid membranes. J. Am. Chem. Soc. 130:10-11.
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 10-11
-
-
Marrink, S.J.1
De Vries, A.H.2
Harroun, T.A.3
Katsaras, J.4
Wassall, S.R.5
|