-
1
-
-
33745478681
-
Modularizing gene regulation
-
Vilar, J. M. G. (2006) Modularizing gene regulation Mol. Syst. Biol. 2, 2006.0016
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 20060016
-
-
Vilar, J.M.G.1
-
2
-
-
32844455250
-
A bottom-up approach to gene regulation
-
Guido, N. J., Wang, X., Adalsteinsson, D., McMillen, D., Hasty, J., Cantor, C. R., Elston, T. C., and Collins, J. J. (2006) A bottom-up approach to gene regulation Nature 439, 856-860
-
(2006)
Nature
, vol.439
, pp. 856-860
-
-
Guido, N.J.1
Wang, X.2
Adalsteinsson, D.3
McMillen, D.4
Hasty, J.5
Cantor, C.R.6
Elston, T.C.7
Collins, J.J.8
-
3
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz, M. B. and Leibler, S. (2000) A synthetic oscillatory network of transcriptional regulators Nature 403, 335-338
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
4
-
-
0037165942
-
Combinatorial synthesis of genetic networks
-
Guet, C. C., Elowitz, M. B., Hsing, W., and Leibler, S. (2002) Combinatorial synthesis of genetic networks Science 296, 1466-1470
-
(2002)
Science
, vol.296
, pp. 1466-1470
-
-
Guet, C.C.1
Elowitz, M.B.2
Hsing, W.3
Leibler, S.4
-
5
-
-
44349147786
-
Uncovering cis regulatory codes using synthetic promoter shuffling
-
Kinkhabwala, A. and Guet, C. C. (2008) Uncovering cis regulatory codes using synthetic promoter shuffling PLoS One 3, e2030
-
(2008)
PLoS One
, vol.3
, pp. 2030
-
-
Kinkhabwala, A.1
Guet, C.C.2
-
6
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner, T. S., Cantor, C. R., and Collins, J. J. (2000) Construction of a genetic toggle switch in Escherichia coli Nature 403, 339-342
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
7
-
-
84868619337
-
Genetic programs constructed from layered logic gates in single cells
-
Moon, T. S., Lou, C., Tamsir, A., Stanton, B. C., and Voigt, C. A. (2012) Genetic programs constructed from layered logic gates in single cells Nature 491, 249-253
-
(2012)
Nature
, vol.491
, pp. 249-253
-
-
Moon, T.S.1
Lou, C.2
Tamsir, A.3
Stanton, B.C.4
Voigt, C.A.5
-
8
-
-
57049159362
-
A fast, robust and tunable synthetic gene oscillator
-
Stricker, J., Cookson, S., Bennett, M. R., Mather, W. H., Tsimring, L. S., and Hasty, J. (2008) A fast, robust and tunable synthetic gene oscillator Nature 456, 516-519
-
(2008)
Nature
, vol.456
, pp. 516-519
-
-
Stricker, J.1
Cookson, S.2
Bennett, M.R.3
Mather, W.H.4
Tsimring, L.S.5
Hasty, J.6
-
9
-
-
33846936445
-
Synthetic cooperation in engineered yeast populations
-
Shou, W., Ram, S., and Vilar, J. M. G. (2007) Synthetic cooperation in engineered yeast populations Proc. Natl. Acad. Sci. U.S.A. 104, 1877-1882
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 1877-1882
-
-
Shou, W.1
Ram, S.2
Vilar, J.M.G.3
-
10
-
-
58149392486
-
Simpson's paradox in a synthetic microbial system
-
Chuang, J. S., Rivoire, O., and Leibler, S. (2009) Simpson's paradox in a synthetic microbial system Science 323, 272-275
-
(2009)
Science
, vol.323
, pp. 272-275
-
-
Chuang, J.S.1
Rivoire, O.2
Leibler, S.3
-
11
-
-
77955629989
-
Cooperation and Hamilton's rule in a simple synthetic microbial system
-
Chuang, J. S., Rivoire, O., and Leibler, S. (2010) Cooperation and Hamilton's rule in a simple synthetic microbial system Mol. Syst. Biol. 6, 398
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 398
-
-
Chuang, J.S.1
Rivoire, O.2
Leibler, S.3
-
12
-
-
66149108283
-
Snowdrift game dynamics and facultative cheating in yeast
-
Gore, J., Youk, H., and van Oudenaarden, A. (2009) Snowdrift game dynamics and facultative cheating in yeast Nature 459, 253-256
-
(2009)
Nature
, vol.459
, pp. 253-256
-
-
Gore, J.1
Youk, H.2
Van Oudenaarden, A.3
-
13
-
-
78651406505
-
Distributed biological computation with multicellular engineered networks
-
Regot, S., Macia, J., Conde, N., Furukawa, K., Kjellen, J., Peeters, T., Hohmann, S., de Nadal, E., Posas, F., and Sole, R. (2011) Distributed biological computation with multicellular engineered networks Nature 469, 207-211
-
(2011)
Nature
, vol.469
, pp. 207-211
-
-
Regot, S.1
Macia, J.2
Conde, N.3
Furukawa, K.4
Kjellen, J.5
Peeters, T.6
Hohmann, S.7
De Nadal, E.8
Posas, F.9
Sole, R.10
-
14
-
-
84862081641
-
Foundations for the design and implementation of synthetic genetic circuits
-
Slusarczyk, A. L., Lin, A., and Weiss, R. (2012) Foundations for the design and implementation of synthetic genetic circuits Nat. Rev. Genet. 13, 406-420
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 406-420
-
-
Slusarczyk, A.L.1
Lin, A.2
Weiss, R.3
-
16
-
-
54249116230
-
Genetic regulatory mechanisms in the synthesis of proteins
-
Jacob, F. and Monod, J. (1961) Genetic regulatory mechanisms in the synthesis of proteins J. Mol. Biol. 3, 318-356
-
(1961)
J. Mol. Biol.
, vol.3
, pp. 318-356
-
-
Jacob, F.1
Monod, J.2
-
17
-
-
0029938053
-
Crystal structure of the lactose operon repressor and its complexes with DNA and inducer
-
Lewis, M., Chang, G., Horton, N. C., Kercher, M. A., Pace, H. C., Schumacher, M. A., Brennan, R. G., and Lu, P. (1996) Crystal structure of the lactose operon repressor and its complexes with DNA and inducer Science 271, 1247-1254
-
(1996)
Science
, vol.271
, pp. 1247-1254
-
-
Lewis, M.1
Chang, G.2
Horton, N.C.3
Kercher, M.A.4
Pace, H.C.5
Schumacher, M.A.6
Brennan, R.G.7
Lu, P.8
-
18
-
-
0025343547
-
The three operators of the lac operon cooperate in repression
-
Oehler, S., Eismann, E. R., Kramer, H., and Muller-Hill, B. (1990) The three operators of the lac operon cooperate in repression EMBO J. 9, 973-979
-
(1990)
EMBO J.
, vol.9
, pp. 973-979
-
-
Oehler, S.1
Eismann, E.R.2
Kramer, H.3
Muller-Hill, B.4
-
19
-
-
0022529619
-
Upstream operators enhance repression of the lac promoter
-
Mossing, M. C. and Record, M. T., Jr. (1986) Upstream operators enhance repression of the lac promoter Science 233, 889-892
-
(1986)
Science
, vol.233
, pp. 889-892
-
-
Mossing, M.C.1
Record, Jr.M.T.2
-
20
-
-
0028365289
-
Quality and position of the three lac operators of E coli define efficiency of repression
-
Oehler, S., Amouyal, M., Kolkhof, P., von Wilcken-Bergmann, B., and Muller-Hill, B. (1994) Quality and position of the three lac operators of E. coli define efficiency of repression EMBO J. 13, 3348-3355
-
(1994)
EMBO J.
, vol.13
, pp. 3348-3355
-
-
Oehler, S.1
Amouyal, M.2
Kolkhof, P.3
Von Wilcken-Bergmann, B.4
Muller-Hill, B.5
-
21
-
-
0032479079
-
Going the distance: A current view of enhancer action
-
Blackwood, E. M. and Kadonaga, J. T. (1998) Going the distance: a current view of enhancer action Science 281, 60-63
-
(1998)
Science
, vol.281
, pp. 60-63
-
-
Blackwood, E.M.1
Kadonaga, J.T.2
-
22
-
-
0003880161
-
-
5 th ed. Garland Science, New York
-
Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K., and Walter, P. (2008) Molecular Biology of the Cell, 5 th ed., Garland Science, New York.
-
(2008)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
23
-
-
80052446671
-
Control of gene expression by modulated self-assembly
-
Vilar, J. M. G. and Saiz, L. (2011) Control of gene expression by modulated self-assembly Nucleic Acids Res. 39, 6854-6863
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 6854-6863
-
-
Vilar, J.M.G.1
Saiz, L.2
-
24
-
-
84860207044
-
The physics of protein-DNA interaction networks in the control of gene expression
-
Saiz, L. (2012) The physics of protein-DNA interaction networks in the control of gene expression J. Phys.: Condens. Matter 24, 193102
-
(2012)
J. Phys.: Condens. Matter
, vol.24
, pp. 193102
-
-
Saiz, L.1
-
27
-
-
84874702922
-
DNA looping in prokaryotes: Experimental and theoretical approaches
-
Cournac, A. and Plumbridge, J. (2013) DNA looping in prokaryotes: experimental and theoretical approaches J. Bacteriol. 195, 1109-1119
-
(2013)
J. Bacteriol.
, vol.195
, pp. 1109-1119
-
-
Cournac, A.1
Plumbridge, J.2
-
28
-
-
0033545416
-
Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances
-
Revet, B., von Wilcken-Bergmann, B., Bessert, H., Barker, A., and Muller-Hill, B. (1999) Four dimers of lambda repressor bound to two suitably spaced pairs of lambda operators form octamers and DNA loops over large distances Curr. Biol. 9, 151-154
-
(1999)
Curr. Biol.
, vol.9
, pp. 151-154
-
-
Revet, B.1
Von Wilcken-Bergmann, B.2
Bessert, H.3
Barker, A.4
Muller-Hill, B.5
-
29
-
-
1042278041
-
Cooperativity in long-range gene regulation by the lambda CI repressor
-
Dodd, I. B., Shearwin, K. E., Perkins, A. J., Burr, T., Hochschild, A., and Egan, J. B. (2004) Cooperativity in long-range gene regulation by the lambda CI repressor Genes Dev. 18, 344-354
-
(2004)
Genes Dev.
, vol.18
, pp. 344-354
-
-
Dodd, I.B.1
Shearwin, K.E.2
Perkins, A.J.3
Burr, T.4
Hochschild, A.5
Egan, J.B.6
-
30
-
-
33744807717
-
DNA looping: The consequences and its control
-
Saiz, L. and Vilar, J. M. G. (2006) DNA looping: the consequences and its control Curr. Opin. Struct. Biol. 16, 344-350
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 344-350
-
-
Saiz, L.1
Vilar, J.M.G.2
-
31
-
-
33750352462
-
Transcriptional regulatory elements in the human genome
-
Maston, G. A., Evans, S. K., and Green, M. R. (2006) Transcriptional regulatory elements in the human genome Annu. Rev. Genomics Hum. Genet. 7, 29-59
-
(2006)
Annu. Rev. Genomics Hum. Genet.
, vol.7
, pp. 29-59
-
-
Maston, G.A.1
Evans, S.K.2
Green, M.R.3
-
32
-
-
24044540381
-
Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking
-
Wang, Q., Carroll, J. S., and Brown, M. (2005) Spatial and temporal recruitment of androgen receptor and its coactivators involves chromosomal looping and polymerase tracking Mol. Cell 19, 631-642
-
(2005)
Mol. Cell
, vol.19
, pp. 631-642
-
-
Wang, Q.1
Carroll, J.S.2
Brown, M.3
-
33
-
-
41649111599
-
Progesterone-dependent deoxyribonucleic acid looping between RUSH/SMARCA3 and Egr-1 mediates repression by c-Rel
-
Hewetson, A. and Chilton, B. S. (2008) Progesterone-dependent deoxyribonucleic acid looping between RUSH/SMARCA3 and Egr-1 mediates repression by c-Rel Mol. Endocrinol. 22, 813-822
-
(2008)
Mol. Endocrinol.
, vol.22
, pp. 813-822
-
-
Hewetson, A.1
Chilton, B.S.2
-
34
-
-
0028606859
-
P53 oligomerization and DNA looping are linked with transcriptional activation
-
Stenger, J. E., Tegtmeyer, P., Mayr, G. A., Reed, M., Wang, Y., Wang, P., Hough, P. V., and Mastrangelo, I. A. (1994) p53 oligomerization and DNA looping are linked with transcriptional activation EMBO J. 13, 6011-6020
-
(1994)
EMBO J.
, vol.13
, pp. 6011-6020
-
-
Stenger, J.E.1
Tegtmeyer, P.2
Mayr, G.A.3
Reed, M.4
Wang, Y.5
Wang, P.6
Hough, P.V.7
Mastrangelo, I.A.8
-
35
-
-
0034637546
-
Mechanism of kappa B DNA binding by Rel/NF-kappa B dimers
-
Phelps, C. B., Sengchanthalangsy, L. L., Malek, S., and Ghosh, G. (2000) Mechanism of kappa B DNA binding by Rel/NF-kappa B dimers J. Biol. Chem. 275, 24392-24399
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 24392-24399
-
-
Phelps, C.B.1
Sengchanthalangsy, L.L.2
Malek, S.3
Ghosh, G.4
-
36
-
-
0035823547
-
Functional importance of Stat3 tetramerization in activation of the alpha 2-macroglobulin gene
-
Zhang, X. and Darnell, J. E., Jr. (2001) Functional importance of Stat3 tetramerization in activation of the alpha 2-macroglobulin gene J. Biol. Chem. 276, 33576-33581
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 33576-33581
-
-
Zhang, X.1
Darnell, Jr.J.E.2
-
37
-
-
0033639075
-
Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration
-
Tomilin, A., Remenyi, A., Lins, K., Bak, H., Leidel, S., Vriend, G., Wilmanns, M., and Scholer, H. R. (2000) Synergism with the coactivator OBF-1 (OCA-B, BOB-1) is mediated by a specific POU dimer configuration Cell 103, 853-864
-
(2000)
Cell
, vol.103
, pp. 853-864
-
-
Tomilin, A.1
Remenyi, A.2
Lins, K.3
Bak, H.4
Leidel, S.5
Vriend, G.6
Wilmanns, M.7
Scholer, H.R.8
-
38
-
-
58849156573
-
A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress
-
Kang, J., Gemberling, M., Nakamura, M., Whitby, F. G., Handa, H., Fairbrother, W. G., and Tantin, D. (2009) A general mechanism for transcription regulation by Oct1 and Oct4 in response to genotoxic and oxidative stress Genes Dev. 23, 208-222
-
(2009)
Genes Dev.
, vol.23
, pp. 208-222
-
-
Kang, J.1
Gemberling, M.2
Nakamura, M.3
Whitby, F.G.4
Handa, H.5
Fairbrother, W.G.6
Tantin, D.7
-
39
-
-
4644349809
-
DNA-looping by RXR tetramers permits transcriptional regulation at a distance
-
Yasmin, R., Yeung, K. T., Chung, R. H., Gaczynska, M. E., Osmulski, P. A., and Noy, N. (2004) DNA-looping by RXR tetramers permits transcriptional regulation at a distance″ J. Mol. Biol. 343, 327-338
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 327-338
-
-
Yasmin, R.1
Yeung, K.T.2
Chung, R.H.3
Gaczynska, M.E.4
Osmulski, P.A.5
Noy, N.6
-
40
-
-
0042622638
-
DNA looping and physical constraints on transcription regulation
-
Vilar, J. M. G. and Leibler, S. (2003) DNA looping and physical constraints on transcription regulation J. Mol. Biol. 331, 981-989
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 981-989
-
-
Vilar, J.M.G.1
Leibler, S.2
-
41
-
-
34547852967
-
Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping
-
Zhang, Y., McEwen, A. E., Crothers, D. M., and Levene, S. D. (2006) Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping PloS One 1, e136
-
(2006)
PloS One
, vol.1
, pp. 136
-
-
Zhang, Y.1
McEwen, A.E.2
Crothers, D.M.3
Levene, S.D.4
-
42
-
-
39449115716
-
Ab initio thermodynamic modeling of distal multisite transcription regulation
-
Saiz, L. and Vilar, J. M. G. (2008) Ab initio thermodynamic modeling of distal multisite transcription regulation Nucleic Acids Res. 36, 726-731
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 726-731
-
-
Saiz, L.1
Vilar, J.M.G.2
-
43
-
-
15744393452
-
DNA looping in gene regulation: From the assembly of macromolecular complexes to the control of transcriptional noise
-
Vilar, J. M. G. and Saiz, L. (2005) DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise Curr. Opin. Genet. Dev. 15, 136-144
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 136-144
-
-
Vilar, J.M.G.1
Saiz, L.2
-
44
-
-
33745595880
-
Modeling the Lac repressor-operator assembly: The influence of DNA looping on Lac repressor conformation
-
Swigon, D., Coleman, B. D., and Olson, W. K. (2006) Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation Proc. Natl. Acad. Sci. U.S.A. 103, 9879-9884
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 9879-9884
-
-
Swigon, D.1
Coleman, B.D.2
Olson, W.K.3
-
45
-
-
18744391399
-
Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation
-
Villa, E., Balaeff, A., and Schulten, K. (2005) Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation Proc. Natl. Acad. Sci. U.S.A. 102, 6783-6788
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 6783-6788
-
-
Villa, E.1
Balaeff, A.2
Schulten, K.3
-
46
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
Elf, J., Li, G. W., and Xie, X. S. (2007) Probing transcription factor dynamics at the single-molecule level in a living cell Science 316, 1191-1194
-
(2007)
Science
, vol.316
, pp. 1191-1194
-
-
Elf, J.1
Li, G.W.2
Xie, X.S.3
-
47
-
-
84862624197
-
The lac repressor displays facilitated diffusion in living cells
-
Hammar, P., Leroy, P., Mahmutovic, A., Marklund, E. G., Berg, O. G., and Elf, J. (2012) The lac repressor displays facilitated diffusion in living cells Science 336, 1595-1598
-
(2012)
Science
, vol.336
, pp. 1595-1598
-
-
Hammar, P.1
Leroy, P.2
Mahmutovic, A.3
Marklund, E.G.4
Berg, O.G.5
Elf, J.6
-
48
-
-
84868289569
-
Gene location and DNA density determine transcription factor distributions in Escherichia coli
-
Kuhlman, T. E. and Cox, E. C. (2012) Gene location and DNA density determine transcription factor distributions in Escherichia coli Mol. Syst. Biol. 8, 610
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 610
-
-
Kuhlman, T.E.1
Cox, E.C.2
-
49
-
-
34347232364
-
Combinatorial transcriptional control of the lactose operon of Escherichia coli
-
Kuhlman, T., Zhang, Z., Saier, M. H., Jr., and Hwa, T. (2007) Combinatorial transcriptional control of the lactose operon of Escherichia coli Proc. Natl. Acad. Sci. U.S.A. 104, 6043-6048
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 6043-6048
-
-
Kuhlman, T.1
Zhang, Z.2
Saier, Jr.M.H.3
Hwa, T.4
-
50
-
-
34447527220
-
Effect of DNA looping on the induction kinetics of the lac operon
-
Narang, A. (2007) Effect of DNA looping on the induction kinetics of the lac operon J. Theor. Biol. 247, 695-712
-
(2007)
J. Theor. Biol.
, vol.247
, pp. 695-712
-
-
Narang, A.1
-
51
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak, E. M., Thattai, M., Lim, H. N., Shraiman, B. I., and Van Oudenaarden, A. (2004) Multistability in the lactose utilization network of Escherichia coli Nature 427, 737-740
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
Van Oudenaarden, A.5
-
53
-
-
73149092964
-
High local concentration: A fundamental strategy of life
-
Oehler, S. and Muller-Hill, B. (2010) High local concentration: a fundamental strategy of life J. Mol. Biol. 395, 242-253
-
(2010)
J. Mol. Biol.
, vol.395
, pp. 242-253
-
-
Oehler, S.1
Muller-Hill, B.2
-
54
-
-
3843114319
-
Intramolecular reaction in polycondensations. I. the theory of linear systems
-
Jacobson, H. and Stockmayer, W. H. (1950) Intramolecular reaction in polycondensations. I. The theory of linear systems J. Chem. Phys. 18, 1600-1606
-
(1950)
J. Chem. Phys.
, vol.18
, pp. 1600-1606
-
-
Jacobson, H.1
Stockmayer, W.H.2
-
55
-
-
33744821974
-
Stochastic dynamics of macromolecular-assembly networks
-
Saiz, L. and Vilar, J. M. G. (2006) Stochastic dynamics of macromolecular-assembly networks Mol. Syst. Biol. 2, 2006.0024
-
(2006)
Mol. Syst. Biol.
, vol.2
, pp. 20060024
-
-
Saiz, L.1
Vilar, J.M.G.2
-
56
-
-
77955443147
-
CplexA: A Mathematica package to study macromolecular-assembly control of gene expression
-
Vilar, J. M. G. and Saiz, L. (2010) CplexA: a Mathematica package to study macromolecular-assembly control of gene expression Bioinformatics 26, 2060-2061
-
(2010)
Bioinformatics
, vol.26
, pp. 2060-2061
-
-
Vilar, J.M.G.1
Saiz, L.2
-
58
-
-
0022429106
-
The or control system of bacteriophage lambda. A physical-chemical model for gene regulation
-
Shea, M. A. and Ackers, G. K. (1985) The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation J. Mol. Biol. 181, 211-230
-
(1985)
J. Mol. Biol.
, vol.181
, pp. 211-230
-
-
Shea, M.A.1
Ackers, G.K.2
-
59
-
-
15744387380
-
Transcriptional regulation by the numbers: Applications
-
Bintu, L., Buchler, N. E., Garcia, H. G., Gerland, U., Hwa, T., Kondev, J., Kuhlman, T., and Phillips, R. (2005) Transcriptional regulation by the numbers: applications Curr. Opin. Genet. Dev. 15, 125-135
-
(2005)
Curr. Opin. Genet. Dev.
, vol.15
, pp. 125-135
-
-
Bintu, L.1
Buchler, N.E.2
Garcia, H.G.3
Gerland, U.4
Hwa, T.5
Kondev, J.6
Kuhlman, T.7
Phillips, R.8
-
60
-
-
58149354385
-
Analysis of combinatorial cis-regulation in synthetic and genomic promoters
-
Gertz, J., Siggia, E. D., and Cohen, B. A. (2009) Analysis of combinatorial cis-regulation in synthetic and genomic promoters Nature 457, 215-218
-
(2009)
Nature
, vol.457
, pp. 215-218
-
-
Gertz, J.1
Siggia, E.D.2
Cohen, B.A.3
-
61
-
-
78049281957
-
Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation
-
Vilar, J. M. G. (2010) Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation Biophys. J. 99, 2408-2413
-
(2010)
Biophys. J.
, vol.99
, pp. 2408-2413
-
-
Vilar, J.M.G.1
-
62
-
-
0025025888
-
Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter
-
Hudson, J. M. and Fried, M. G. (1990) Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter J. Mol. Biol. 214, 381-396
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 381-396
-
-
Hudson, J.M.1
Fried, M.G.2
-
63
-
-
55849089592
-
Multilevel deconstruction of the in vivo behavior of looped DNA-protein complexes
-
Saiz, L. and Vilar, J. M. G. (2007) Multilevel deconstruction of the in vivo behavior of looped DNA-protein complexes PLoS One 2, e355
-
(2007)
PLoS One
, vol.2
, pp. 355
-
-
Saiz, L.1
Vilar, J.M.G.2
-
64
-
-
0029975889
-
Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
-
Muller, J., Oehler, S., and Muller-Hill, B. (1996) Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator J. Mol. Biol. 257, 21-29
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 21-29
-
-
Muller, J.1
Oehler, S.2
Muller-Hill, B.3
-
65
-
-
29144433945
-
Inferring the in vivo looping properties of DNA
-
Saiz, L., Rubi, J. M., and Vilar, J. M. G. (2005) Inferring the in vivo looping properties of DNA Proc. Natl. Acad. Sci. U.S.A. 102, 17642-17645
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 17642-17645
-
-
Saiz, L.1
Rubi, J.M.2
Vilar, J.M.G.3
-
66
-
-
84871793646
-
Theoretical and experimental dissection of DNA loop-mediated repression
-
Boedicker, J. Q., Garcia, H. G., and Phillips, R. (2013) Theoretical and experimental dissection of DNA loop-mediated repression Phys. Rev. Lett. 110, 018101
-
(2013)
Phys. Rev. Lett.
, vol.110
, pp. 018101
-
-
Boedicker, J.Q.1
Garcia, H.G.2
Phillips, R.3
-
67
-
-
84871743935
-
Mechanism of promoter repression by Lac repressor-DNA loops
-
Becker, N. A., Peters, J. P., and Maher, L. J., 3rd. (2013) Mechanism of promoter repression by Lac repressor-DNA loops Nucleic Acids Res. 41, 156-166
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 156-166
-
-
Becker, N.A.1
Peters, J.P.2
Maher III, L.J.3
-
68
-
-
0025874018
-
Stability of a Lac repressor mediated ″looped complex
-
Brenowitz, M., Pickar, A., and Jamison, E. (1991) Stability of a Lac repressor mediated ″looped complex″ Biochemistry 30, 5986-5998
-
(1991)
Biochemistry
, vol.30
, pp. 5986-5998
-
-
Brenowitz, M.1
Pickar, A.2
Jamison, E.3
-
69
-
-
0025321080
-
Macromolecular binding equilibria in the lac repressor system: Studies using high-pressure fluorescence spectroscopy
-
Royer, C. A., Chakerian, A. E., and Matthews, K. S. (1990) Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy Biochemistry 29, 4959-4966
-
(1990)
Biochemistry
, vol.29
, pp. 4959-4966
-
-
Royer, C.A.1
Chakerian, A.E.2
Matthews, K.S.3
-
70
-
-
79959994529
-
Quantitative dissection of the simple repression input-output function
-
Garcia, H. G. and Phillips, R. (2011) Quantitative dissection of the simple repression input-output function Proc. Natl. Acad. Sci. U.S.A. 108, 12173-12178
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 12173-12178
-
-
Garcia, H.G.1
Phillips, R.2
-
71
-
-
32644439362
-
Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction
-
Oehler, S., Alberti, S., and Muller-Hill, B. (2006) Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction Nucleic Acids Res. 34, 606-612
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 606-612
-
-
Oehler, S.1
Alberti, S.2
Muller-Hill, B.3
-
72
-
-
29144492140
-
Bistability and hysteresis in epigenetic regulation of the lactose operon. since Delbruck, a long series of ignored models
-
Laurent, M., Charvin, G., and Guespin-Michel, J. (2005) Bistability and hysteresis in epigenetic regulation of the lactose operon. Since Delbruck, a long series of ignored models Cell. Mol. Biol. (Noisy-le-grand) 51, 583-594
-
(2005)
Cell. Mol. Biol. (Noisy-le-grand)
, vol.51
, pp. 583-594
-
-
Laurent, M.1
Charvin, G.2
Guespin-Michel, J.3
-
73
-
-
84855231912
-
Lac operon induction in Escherichia coli: Systematic comparison of IPTG and TMG induction and influence of the transacetylase LacA
-
Marbach, A. and Bettenbrock, K. (2012) lac operon induction in Escherichia coli: Systematic comparison of IPTG and TMG induction and influence of the transacetylase LacA J. Biotechnol. 157, 82-88
-
(2012)
J. Biotechnol.
, vol.157
, pp. 82-88
-
-
Marbach, A.1
Bettenbrock, K.2
|