Combinatorial transcriptional control of the lactose operon of Escherichia coli

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 14, 2007, Pages 6043-6048

  Kuhlman, Thomas ^a   Zhang, Zhongge ^b   Saier Jr , Milton H ^b   Hwa, Terence ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

DNA looping; Gene regulation; lac promoter; Systems biology

Indexed keywords

CYCLIC AMP BINDING PROTEIN; BACTERIAL DNA; REPRESSOR PROTEIN;

ARTICLE; COMBINATORIAL LIBRARY; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; LACTOSE OPERON; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; QUANTITATIVE ANALYSIS; REPRESSOR GENE; SYSTEMS BIOLOGY; THERMODYNAMICS; TRANSCRIPTION REGULATION; BACTERIAL GENE; CHEMISTRY; CONFORMATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM;

ESCHERICHIA COLI;

CYCLIC AMP RECEPTOR PROTEIN; DNA, BACTERIAL; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; LAC OPERON; NUCLEIC ACID CONFORMATION; PROMOTER REGIONS (GENETICS); REPRESSOR PROTEINS; SYSTEMS BIOLOGY; TRANSCRIPTION, GENETIC;

EID: 34347232364     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0606717104     Document Type: Article

References (74)

1. Monod J (1947) Growth 11:223-289.
2. Beckwith J (1987) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, eds Neihardt JL, Ingraham KB, Low B, Magasanik B, Umbarger HE (Am Soc Microbiol, Washington, DC), Vol 2, pp 1439-1443.
3. Beckwith J, Grodzicker T, Arditti R (1972) J Mol Biol 69:155-160.
4. Gilbert W, Muller-Hill B (1970) in The Lactose Operon, eds Beckwith J, Zipser D (Cold Spring Harbor Lab Press, Plainview, NY), pp 93-109.
5. Muller-Hill B (1996) The lac Operon (de Gruyter, Berlin).
6. Oehler S, Amouyal M, Kokhof P, von Wilcken Bergmann B, Muller-Hill B (1994) EMBO J 13:3348-3355.
7. Davidson EH, Rast JP, Oliveri P, Ransick A, Calestani C, Yuh CH, Minokawa T, Amore G, Hinman V, Arenas-Mena C (2002) Science 295:1669-1678.
8. Buchler NE, Gerland U, Hwa T (2003) Proc Natl Acad Sci USA 100:5136-5141.
9. Epstein W, Rothman-Denes LB, Hesse J (1975) Proc Natl Acad Sci USA 72:2300-2304.
10. Saier MH, Jr (1989) Microbiol Rev 53:109-120.
11. Saier MH, Jr, Feucht BU, McCaman MT (1975) J Biol Chem 250:7593-7601.
12. Aboud M, Burger M (1970) Biochem Biophys Res Commun 38:1023-1032.
13. Contesse M, Crepin M, Gros F, Ullmann A, Monod J (1970) in The Lactose Operon, eds Beckwith JR, Zipser D (Cold Spring Harbor Lab Press, Plainview, NY), pp 401-416.
14. Pastan I, Perlman R (1970) Science 169:339-344.
15. Makman RS, Sutherland EW (1965) J Biol Chem 240:1309-1314.
16. Novick A, Weiner M (1957) Proc Natl Acad Sci USA 43:553-566.
17. Ozbudak EM, Thattai M, Lim HN, Shraiman BI, Van Oudenaarden A (2004) Nature 427:737-740.
18. Zubay G, Schwartz D, Beckwith J (1970) Proc Natl Acad Sci USA 66:104-110.
19. Eismann E, von Wilcken-Bergmann B, Muller-Hill B (1987) J Mol Biol 195:949-952.
20. Eismann ER, Muller-Hill B (1990) J Mol Biol 213:763-775.
21. Oehler S, Eismann ER, Kramer H, Muller-Hill B (1990) EMBO J 9:973-979.
22. Muller J, Oehler S, Muller-Hill B (1996) J Mol Biol 257:21-29.
23. Friedman BE, Olson JS, Matthews KS (1977) J Mol Biol 111:27-39.
24. Chen J, Alberti S, Matthews KS (1994) J Biol Chem 269:12482-12487.
25. O'Gorman RB, Rosenberg JM, Kallai OB, Dickerson RE, Itakura K, Riggs AD, Matthews KS (1980) J Biol Chem 255:10107-10114.
26. Daly TJ, Matthews KS (1986) Biochemistry 25:5479-5484.
27. Yagil G, Yagil E (1971) Biophys J 11:11-27.
28. Setty Y, Mayo AE, Surette MG, Alon U (2003) Proc Natl Acad Sci USA 100:7702-7707.
29. Busby S, Ebright RH (1999) J Mol Biol 293:199-213.
30. Lewis M, Chang G, Horton NC, Kercher MA, Pace HC, Schumacher MA, Brennan RG, Lu P (1996) Science 271:1247-1254.
31. Balaeff A, Mahadevan L, Schulten K (2004) Structure (London) 12:123-132.
32. Fried MG, Hudson JM (1996) Science 274:1930-1931, and author reply (1996) 274:1931-1932.
33. Hudson JM, Fried MG (1990) J Mol Biol 214:381-396.
34. Vossen KM, Stickle DF, Fried MG (1996) J Mol Biol 255:44-54.
35. Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Kuhlman T, Phillips R (2005) Curr Opin Genet Dev 15:125-135.
36. Bintu L, Buchler NE, Garcia HG, Gerland U, Hwa T, Kondev J, Phillips R (2005) Curr Opin Genet Dev 15:116-124.
37. Ackers GK, Johnson AD, Shea MA (1982) Proc Natl Acad Sci USA 79:1129-1133.
38. Monod J (1956) in Enzymes: Units of Biological Structure and Function (Academic, New York), pp 7-28.
39. Jensen PR, Westerhoff HV, Michelsen O (1993) Eur J Biochem 211:181-191.
40. Vilar JM, Saiz L (2005) Curr Opin Genet Dev 15:136-144.
41. Ide M (1969) Biochem Biophys Res Commun 36:42-46.
42. Perlman RL, Pastan I (1969) Biochem Biophys Res Commun 37:151-157.
43. Tao M, Lipmann F (1969) Proc Natl Acad Sci USA 63:86-92.
44. Magasanik B (1970) in The Lactose Operon, eds Beckwith J, Zipser D (Cold Spring Harbor Lab Press, Plainview, NY), pp 189-219.
45. Magasanik B, Neidhardt F (1987) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, ed Neidhardt F (Am Soc Microbiol, Washington, DC), Vol. 2, pp 1325-1343.
46. Ullmann A, Danchin A (1983) Adv Cyclic Nucleotide Res 15:1-53.
47. Crasnier-Mednansky M, Park MC, Studley WK, Saier MH, Jr (1997) Microbiology 143:785-792.
48. Krin E, Sismeiro O, Danchin A, Bertin PN (2002) Microbiology 148:1553-1559.
49. Takahashi M, Blazy B, Baudras A, Hillen W (1989) J Mol Biol 207:783-796.
50. Fried MG, Crothers DM (1984) J Mol Biol 172:241-262.
51. Garner MM, Revzin A (1982) Biochemistry 21:6032-6036.
52. Harman JG (2001) Biochim Biophys Acta 1547:1-17.
53. Aboud M, Burger M (1971) Biochem Biophys Res Commun 43:174-182.
54. Brana H, Chytil F (1965) Folia Microbiol 11:43-46.
55. Monard D, Janecek J, Rickenberg HV (1969) Biochem Biophys Res Commun 35:584-591.
56. Nielsen LD, Monard D, Rickenberg HV (1973) J Bacteriol 116:857-866.
57. Nielsen LD, Rickenberg HV (1974) Methods Enzymol 38:249-256.
58. Imamura R, Yamanaka K, Ogura T, Hiraga S, Fujita N, Ishihama A, Niki H (1996) J Biol Chem 271:25423-25429.
59. Gerland U, Moroz JD, Hwa T (2002) Proc Natl Acad Sci USA 99:12015-12020.
60. Straney DC, Straney SB, Crothers DM (1989) J Mol Biol 206:41-57.
61. Malan TP, Kolb A, Buc H, McClure WR (1984) J Mol Biol 180:881-909.
62. Oehler S, Alberti S, Muller-Hill B (2006) Nucleic Acids Res 34:606-612.
63. Nichols JC, Matthews KS (1997) J Biol Chem 272:18550-18557.
64. Jobe A, Bourgeois S (1972) J Mol Biol 69:397-408.
65. Fried MG, Daugherty MA (2001) J Biol Chem 276:11226-11229.
66. Perros M, Steitz TA (1996) Science 274:1929-1930, and author reply (1996) 274:1931-1932.
67. Borowiec JA, Zhang L, Sasse-Dwight S, Gralla JD (1987) J Mol Biol 196:101-111.
68. de Crombrugghe B, Busby S, Buc H (1984) Science 224:831-838.
69. Becker NA, Kahn JD, Maher LJ, III (2005) J Mol Biol 349:716-730.
70. Monod J (1950) Ann Inst Pasteur 79:390.
71. Datsenko KA, Wanner BL (2000) Proc Natl Acad Sci USA 97:6640-6645.
72. Lutz R, Bujard H (1997) Nucleic Acids Res 25:1203-1210.
73. Miller JH (1972) Experiments in Molecular Genetics (Cold Spring Harbor Lab Press, Plainview, NY).
74. Griffith KL, Wolf RE, Jr (2002) Biochem Biophys Res Commun 290:397-402.