메뉴 건너뛰기




Volumn 110, Issue 1, 2013, Pages

Theoretical and experimental dissection of DNA loop-mediated repression

Author keywords

[No Author keywords available]

Indexed keywords

COPY NUMBER; DNA BINDING; DNA LOOPING; GENETIC CIRCUITS; KEY PARAMETERS; THEORETICAL MODELS; THERMODYNAMIC MODEL; TRANSCRIPTIONAL NETWORKS; TUNABLE PARAMETER; TUNING NETWORKS;

EID: 84871793646     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.110.018101     Document Type: Article
Times cited : (22)

References (35)
  • 2
    • 67650601963 scopus 로고    scopus 로고
    • CELLB5 0092-8674 10.1016/j.cell.2009.07.002
    • J. C. Perez and E. A. Groisman, Cell 138, 233 (2009). CELLB5 0092-8674 10.1016/j.cell.2009.07.002
    • (2009) Cell , vol.138 , pp. 233
    • Perez, J.C.1    Groisman, E.A.2
  • 3
    • 28544451327 scopus 로고    scopus 로고
    • Foundations for engineering biology
    • DOI 10.1038/nature04342, PII N04342
    • D. Endy, Nature (London) 438, 449 (2005). NATUAS 0028-0836 10.1038/nature04342 (Pubitemid 41742010)
    • (2005) Nature , vol.438 , Issue.7067 , pp. 449-453
    • Endy, D.1
  • 4
    • 33748953866 scopus 로고    scopus 로고
    • Genetic parts to program bacteria
    • DOI 10.1016/j.copbio.2006.09.001, PII S0958166906001273, Systems Biology / Tissue and Cell Engineering
    • C. A. Voigt, Curr. Opin. Biotechnol. 17, 548 (2006). CUOBE3 0958-1669 10.1016/j.copbio.2006.09.001 (Pubitemid 44442933)
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.5 , pp. 548-557
    • Voigt, C.A.1
  • 11
    • 0027510369 scopus 로고
    • In vivo thermodynamic analysis of repression with and without looping in lac constructs. Estimates of free and local lac repressor concentrations and of physical properties of a region of supercoiled plasmid DNA in vivo
    • DOI 10.1006/jmbi.1993.1133
    • S. M. Law, G. R. Bellomy, P. J. Schlax, and M. T. J. Record, J. Mol. Biol. 230, 161 (1993). JMOBAK 0022-2836 10.1006/jmbi.1993.1133 (Pubitemid 23093555)
    • (1993) Journal of Molecular Biology , vol.230 , Issue.1 , pp. 161-173
    • Law, S.M.1    Bellomy, G.R.2    Schlax, P.J.3    Record Jr., M.T.4
  • 12
    • 0042622638 scopus 로고    scopus 로고
    • DNA looping and physical constraints on transcription regulation
    • DOI 10.1016/S0022-2836(03)00764-2
    • J. M. Vilar and S. Leibler, J. Mol. Biol. 331, 981 (2003). JMOBAK 0022-2836 10.1016/S0022-2836(03)00764-2 (Pubitemid 36969959)
    • (2003) Journal of Molecular Biology , vol.331 , Issue.5 , pp. 981-989
    • Vilar, J.M.G.1    Leibler, S.2
  • 15
    • 34547642985 scopus 로고    scopus 로고
    • Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli
    • DOI 10.1093/nar/gkm419
    • N. A. Becker, J. D. Kahn, and L. J. Maher, III, Nucleic Acids Res. 35, 3988 (2007). NARHAD 0305-1048 10.1093/nar/gkm419 (Pubitemid 47244620)
    • (2007) Nucleic Acids Research , vol.35 , Issue.12 , pp. 3988-4000
    • Becker, N.A.1    Kahn, J.D.2    Maher III, L.J.3
  • 16
    • 84871779747 scopus 로고    scopus 로고
    • See Supplemental Material at http://link.aps.org/supplemental/10.1103/ PhysRevLett.110.018101 for detailed calculations, additional theoretical considerations and experimental controls.
  • 20
    • 0032580207 scopus 로고    scopus 로고
    • Allosteric effects of DNA on transcriptional regulators
    • DOI 10.1038/31860
    • J. A. Lefstin and K. R. Yamamoto, Nature (London) 392, 885 (1998). NATUAS 0028-0836 10.1038/31860 (Pubitemid 28232051)
    • (1998) Nature , vol.392 , Issue.6679 , pp. 885-888
    • Lefstin, J.A.1    Yamamoto, K.R.2
  • 21
    • 34547604468 scopus 로고    scopus 로고
    • Noise in gene expression determines cell fate in Bacillus subtilis
    • DOI 10.1126/science.1140818
    • H. Maamar, A. Raj, and D. Dubnau, Science 317, 526 (2007). SCIEAS 0036-8075 10.1126/science.1140818 (Pubitemid 47196119)
    • (2007) Science , vol.317 , Issue.5837 , pp. 526-529
    • Maamar, H.1    Raj, A.2    Dubnau, D.3
  • 24
    • 39449115716 scopus 로고    scopus 로고
    • Ab initio thermodynamic modeling of distal multisite transcription regulation
    • DOI 10.1093/nar/gkm1034
    • L. Saiz and J. M. Vilar, Nucleic Acids Res. 36, 726 (2008). NARHAD 0305-1048 10.1093/nar/gkm1034 (Pubitemid 351267230)
    • (2008) Nucleic Acids Research , vol.36 , Issue.3 , pp. 726-731
    • Saiz, L.1    Vilar, J.M.G.2
  • 33
    • 0032569960 scopus 로고    scopus 로고
    • GalR-mediated repression and activation of hybrid lacUV5 promoter: Differential contacts with RNA polymerase
    • DOI 10.1016/S0378-1119(98)00237-6, PII S0378111998002376
    • S. Ryu, N. Fujita, A. Ishihama, and S. Adhya, Gene 223, 235 (1998). GENED6 0378-1119 10.1016/S0378-1119(98)00237-6 (Pubitemid 29015932)
    • (1998) Gene , vol.223 , Issue.1-2 , pp. 235-245
    • Ryu, S.1    Fujita, N.2    Ishihama, A.3    Adhya, S.4
  • 34
    • 7944220766 scopus 로고    scopus 로고
    • GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: A GalR negative control mutant
    • DOI 10.1016/j.jmb.2004.09.070, PII S0022283604012276
    • S. Roy, S. Semsey, M. Liu, G. N. Gussin, and S. Adhya, J. Mol. Biol. 344, 609 (2004). JMOBAK 0022-2836 10.1016/j.jmb.2004.09.070 (Pubitemid 39469207)
    • (2004) Journal of Molecular Biology , vol.344 , Issue.3 , pp. 609-618
    • Roy, S.1    Semsey, S.2    Liu, M.3    Gussin, G.N.4    Adhya, S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.